Wall clock time and date at job start Mon Mar 30 2020 03:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47737 * 2 1 4 4 N 1.46895 * 109.47347 * 239.99654 * 2 1 3 5 5 C 1.53005 * 109.47380 * 120.00008 * 2 1 3 6 6 H 1.09000 * 110.76481 * 58.73348 * 5 2 1 7 7 C 1.55133 * 110.70877 * 181.93693 * 5 2 1 8 8 C 1.54912 * 101.65385 * 154.03181 * 7 5 2 9 9 N 1.47838 * 104.79635 * 322.93104 * 8 7 5 10 10 C 1.46898 * 111.00263 * 146.36295 * 9 8 7 11 11 H 1.09006 * 109.46813 * 296.70723 * 10 9 8 12 12 C 1.52999 * 109.47164 * 56.70499 * 10 9 8 13 13 C 1.50701 * 109.47633 * 176.70888 * 10 9 8 14 14 H 1.08008 * 119.99582 * 359.97438 * 13 10 9 15 15 C 1.37870 * 120.00372 * 180.02562 * 13 10 9 16 16 N 1.31522 * 119.99857 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 119.99983 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47536 * 59.99857 * 17 15 13 19 19 H 1.48513 * 109.46979 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47057 * 299.99273 * 17 15 13 21 21 C 1.47442 * 108.56967 * 24.09370 * 9 8 7 22 22 H 1.08998 * 109.46604 * 300.00328 * 1 2 3 23 23 H 1.08999 * 109.46736 * 59.99979 * 1 2 3 24 24 H 1.08996 * 109.47064 * 180.02562 * 1 2 3 25 25 H 1.00903 * 111.00561 * 303.99179 * 4 2 1 26 26 H 1.00902 * 111.00089 * 67.94592 * 4 2 1 27 27 H 1.09003 * 110.99180 * 35.94451 * 7 5 2 28 28 H 1.08997 * 110.99290 * 272.12538 * 7 5 2 29 29 H 1.08999 * 110.37263 * 204.09989 * 8 7 5 30 30 H 1.09003 * 110.46566 * 81.80760 * 8 7 5 31 31 H 1.08999 * 109.47000 * 185.31071 * 12 10 9 32 32 H 1.08998 * 109.47195 * 305.30967 * 12 10 9 33 33 H 1.09006 * 109.47116 * 65.31177 * 12 10 9 34 34 H 0.97000 * 119.99643 * 180.02562 * 16 15 13 35 35 H 1.08997 * 109.89275 * 118.41886 * 21 9 8 36 36 H 1.09007 * 109.88939 * 239.60470 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0401 -0.7213 1.2493 6 1 1.6702 -1.7461 1.2819 7 6 3.5903 -0.6956 1.3030 8 6 3.8527 -0.8151 2.8250 9 7 2.7762 -0.0231 3.4571 10 6 2.3729 -0.6127 4.7407 11 1 1.9556 -1.6051 4.5695 12 6 3.5933 -0.7237 5.6567 13 6 1.3340 0.2636 5.3918 14 1 1.0064 1.1683 4.9013 15 6 0.8026 -0.0891 6.6141 16 7 1.2019 -1.1906 7.2116 17 14 -0.4846 0.9975 7.4215 18 1 -1.6694 1.1053 6.5328 19 1 -0.8923 0.4013 8.7191 20 1 0.0843 2.3493 7.6543 21 6 1.6353 0.0459 2.5257 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.6438 -1.6272 -1.2561 26 1 1.8068 -0.1659 -2.0333 27 1 3.9790 0.2449 0.9125 28 1 4.0137 -1.5444 0.7660 29 1 4.8280 -0.3981 3.0758 30 1 3.7933 -1.8566 3.1414 31 1 3.3144 -1.2463 6.5717 32 1 4.3810 -1.2785 5.1470 33 1 3.9539 0.2748 5.9041 34 1 0.8277 -1.4389 8.0714 35 1 0.7595 -0.4207 2.9767 36 1 1.4190 1.0858 2.2805 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227210903.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:37 Heat of formation + Delta-G solvation = -29.072760 kcal Electronic energy + Delta-G solvation = -14879.750062 eV Core-core repulsion = 12590.176447 eV Total energy + Delta-G solvation = -2289.573615 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.26445 -37.18068 -35.13710 -32.64583 -30.53963 -29.43830 -28.42711 -26.99458 -23.64637 -22.76979 -21.17391 -20.76648 -18.24538 -17.29497 -16.74765 -16.61713 -15.85081 -15.07148 -14.78821 -14.56244 -14.16222 -13.82468 -13.70754 -13.53898 -13.39261 -12.91232 -12.70880 -12.54992 -12.31198 -12.13374 -12.06680 -11.71930 -11.58741 -11.49006 -11.33337 -10.95657 -10.54280 -9.54144 -8.89482 -8.12470 -6.24242 1.40206 1.42553 1.50240 2.41244 3.15238 3.46630 3.54435 3.77103 3.96402 4.18670 4.37361 4.43492 4.46345 4.55943 4.77045 4.80074 4.91476 4.92003 5.00007 5.05207 5.08486 5.16405 5.21359 5.24644 5.27331 5.46931 5.53365 5.72037 5.77543 6.24720 6.30731 6.43269 6.69346 6.73195 6.90617 7.45057 8.93811 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036201 B = 0.008700 C = 0.007356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.274713 B = 3217.548465 C = 3805.473502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.109 3.891 3 H 0.079 0.921 4 N -0.842 5.842 5 C -0.094 4.094 6 H 0.059 0.941 7 C -0.091 4.091 8 C 0.036 3.964 9 N -0.538 5.538 10 C 0.214 3.786 11 H -0.040 1.040 12 C -0.119 4.119 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.010 3.990 16 N -0.922 5.922 17 Si 0.960 3.040 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.271 1.271 21 C 0.065 3.935 22 H 0.050 0.950 23 H 0.070 0.930 24 H 0.053 0.947 25 H 0.343 0.657 26 H 0.350 0.650 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.023 0.977 31 H 0.056 0.944 32 H 0.030 0.970 33 H 0.029 0.971 34 H 0.262 0.738 35 H 0.029 0.971 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.341 0.991 -14.091 14.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.003 4.003 3 H 0.097 0.903 4 N -0.372 5.372 5 C -0.114 4.114 6 H 0.078 0.922 7 C -0.129 4.129 8 C -0.092 4.092 9 N -0.263 5.263 10 C 0.107 3.893 11 H -0.022 1.022 12 C -0.177 4.177 13 C -0.557 4.557 14 H 0.072 0.928 15 C -0.188 4.188 16 N -0.562 5.562 17 Si 0.785 3.215 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.197 1.197 21 C -0.063 4.063 22 H 0.069 0.931 23 H 0.089 0.911 24 H 0.072 0.928 25 H 0.156 0.844 26 H 0.164 0.836 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.223 1.480 -13.489 13.625 hybrid contribution -2.046 -0.589 0.614 2.216 sum -0.823 0.891 -12.875 12.932 Atomic orbital electron populations 1.22603 0.97289 1.02020 1.02403 1.21201 0.92192 0.97572 0.89377 0.90297 1.58795 1.66944 1.06992 1.04436 1.22340 0.96565 0.98491 0.94002 0.92217 1.22464 0.94497 1.02660 0.93247 1.23093 0.96064 0.95023 0.95039 1.63603 1.08503 1.50423 1.03731 1.19202 0.92914 0.90941 0.86272 1.02230 1.21635 0.96344 0.99101 1.00648 1.21356 1.21817 1.08227 1.04350 0.92773 1.25736 0.98911 0.96554 0.97632 1.70031 1.44364 1.24968 1.16831 0.85581 0.79277 0.79009 0.77594 1.19634 1.20759 1.19654 1.22580 0.93010 0.99443 0.91309 0.93131 0.91112 0.92791 0.84423 0.83616 0.90615 0.89975 0.90966 0.95838 0.92476 0.95065 0.95221 0.92904 0.95270 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.09 9.28 71.98 0.67 -3.42 16 2 C 0.11 2.57 2.75 44.92 0.12 2.70 16 3 H 0.08 1.94 8.10 -2.39 -0.02 1.92 16 4 N -0.84 -15.89 8.93 -168.68 -1.51 -17.40 16 5 C -0.09 -2.89 2.68 -9.61 -0.03 -2.91 16 6 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 7 C -0.09 -2.73 6.24 31.98 0.20 -2.53 16 8 C 0.04 1.34 5.28 86.78 0.46 1.80 16 9 N -0.54 -24.27 5.02 -864.73 -4.34 -28.61 16 10 C 0.21 11.45 1.61 44.17 0.07 11.52 16 11 H -0.04 -2.37 8.14 -2.38 -0.02 -2.39 16 12 C -0.12 -6.14 8.83 71.98 0.64 -5.50 16 13 C -0.52 -29.71 7.79 25.60 0.20 -29.52 16 14 H 0.05 3.09 7.53 -2.91 -0.02 3.07 16 15 C 0.01 0.57 5.30 84.65 0.45 1.02 16 16 N -0.92 -54.54 11.38 21.45 0.24 -54.29 16 17 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 21 C 0.07 2.60 4.82 86.65 0.42 3.02 16 22 H 0.05 1.31 7.36 -2.39 -0.02 1.29 16 23 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.34 5.93 8.98 -89.69 -0.81 5.12 16 26 H 0.35 5.12 9.08 -89.69 -0.81 4.31 16 27 H 0.08 2.19 8.05 -2.39 -0.02 2.17 16 28 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.07 2.60 8.11 -2.39 -0.02 2.59 16 30 H 0.02 0.93 7.50 -2.39 -0.02 0.91 16 31 H 0.06 3.20 6.23 -2.39 -0.01 3.18 16 32 H 0.03 1.41 6.70 -2.39 -0.02 1.39 16 33 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.26 14.70 8.31 -92.71 -0.77 13.92 16 35 H 0.03 1.32 7.15 -2.39 -0.02 1.30 16 36 H 0.06 2.45 7.70 -2.38 -0.02 2.43 16 Total: -1.00 -62.49 280.40 -0.95 -63.44 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -0.57 Total: 14.01 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 3.20 Total: -23.82 kcal Atomic # 7 Polarization: -94.69 SS G_CDS: -5.60 Total: -100.30 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -62.49 -0.95 -63.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227210903.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.367 kcal (2) G-P(sol) polarization free energy of solvation -62.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds