Wall clock time and date at job start Mon Mar 30 2020 03:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99684 * 2 1 4 4 C 1.53004 * 109.47082 * 168.86373 * 3 2 1 5 5 H 1.08999 * 110.36933 * 295.62071 * 4 3 2 6 6 C 1.54377 * 110.41199 * 173.27086 * 4 3 2 7 7 C 1.54262 * 105.05764 * 217.37210 * 6 4 3 8 8 C 1.54375 * 105.06539 * 359.97438 * 7 6 4 9 9 N 1.48561 * 110.40889 * 57.97097 * 4 3 2 10 10 C 1.46898 * 110.99895 * 277.81677 * 9 4 3 11 11 H 1.08999 * 109.47308 * 56.14907 * 10 9 4 12 12 C 1.53007 * 109.47078 * 176.14657 * 10 9 4 13 13 C 1.50693 * 109.47477 * 296.14679 * 10 9 4 14 14 H 1.08004 * 120.00095 * 359.97438 * 13 10 9 15 15 C 1.37878 * 120.00171 * 180.02562 * 13 10 9 16 16 N 1.31518 * 119.99765 * 180.02562 * 15 13 10 17 17 Si 1.86791 * 120.00136 * 359.97438 * 15 13 10 18 18 H 1.48502 * 109.47341 * 90.00071 * 17 15 13 19 19 H 1.48496 * 109.47375 * 210.00198 * 17 15 13 20 20 H 1.48508 * 109.47197 * 330.00193 * 17 15 13 21 21 H 1.09003 * 109.47235 * 59.99523 * 1 2 3 22 22 H 1.09002 * 109.47340 * 299.99579 * 1 2 3 23 23 H 1.08998 * 109.47157 * 180.02562 * 1 2 3 24 24 H 1.00898 * 111.00496 * 236.04922 * 2 1 3 25 25 H 1.08999 * 109.47481 * 288.86721 * 3 2 1 26 26 H 1.09003 * 109.47114 * 48.86657 * 3 2 1 27 27 H 1.09006 * 110.32113 * 336.26053 * 6 4 3 28 28 H 1.08999 * 110.32824 * 98.37138 * 6 4 3 29 29 H 1.09004 * 110.32165 * 118.89663 * 7 6 4 30 30 H 1.09001 * 110.31853 * 240.99678 * 7 6 4 31 31 H 1.08996 * 110.41309 * 142.63181 * 8 7 6 32 32 H 1.09005 * 110.40774 * 265.08117 * 8 7 6 33 33 H 1.09000 * 109.47037 * 175.71868 * 12 10 9 34 34 H 1.09004 * 109.46912 * 295.71520 * 12 10 9 35 35 H 1.08996 * 109.46699 * 55.71472 * 12 10 9 36 36 H 0.97001 * 119.99737 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4995 1.3405 0.2786 5 1 3.6920 0.9558 1.2802 6 6 4.1061 2.7510 0.1178 7 6 5.4907 2.5212 -0.5223 8 6 5.6045 0.9912 -0.6938 9 7 4.1976 0.5118 -0.7377 10 6 4.1146 -0.9155 -0.4004 11 1 3.0688 -1.2034 -0.2932 12 6 4.7592 -1.7415 -1.5155 13 6 4.8405 -1.1685 0.8958 14 1 5.3164 -0.3508 1.4167 15 6 4.8981 -2.4440 1.4161 16 7 5.5312 -2.6646 2.5476 17 14 4.0758 -3.8584 0.5149 18 1 5.0414 -4.4694 -0.4335 19 1 3.6327 -4.8803 1.4970 20 1 2.8993 -3.3501 -0.2354 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8307 -0.5260 -0.7813 25 1 1.8153 1.8298 -0.9724 26 1 1.4944 1.9529 0.7740 27 1 3.4822 3.3588 -0.5376 28 1 4.2119 3.2308 1.0908 29 1 5.5465 3.0164 -1.4917 30 1 6.2777 2.8892 0.1359 31 1 6.1177 0.7502 -1.6247 32 1 6.1283 0.5515 0.1551 33 1 4.7659 -2.7936 -1.2308 34 1 4.1882 -1.6177 -2.4357 35 1 5.7825 -1.4014 -1.6743 36 1 5.5721 -3.5620 2.9135 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227729055.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:42 Heat of formation + Delta-G solvation = 23.171030 kcal Electronic energy + Delta-G solvation = -15412.445188 eV Core-core repulsion = 13125.137034 eV Total energy + Delta-G solvation = -2287.308154 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.76206 -35.08540 -33.78006 -31.45690 -29.52139 -28.01270 -25.33520 -24.88973 -23.16695 -20.90890 -19.71128 -19.08709 -16.89281 -15.71182 -15.29192 -14.57798 -14.04191 -13.93807 -13.28000 -13.13050 -12.74893 -12.54264 -12.17713 -11.93911 -11.58314 -11.47557 -11.22232 -10.96106 -10.70971 -10.31641 -10.17735 -10.12222 -9.94826 -9.67898 -9.35456 -9.12504 -8.45019 -7.88561 -7.20208 -6.00911 -3.98484 3.32910 3.44065 3.46429 4.47751 4.70214 5.00130 5.31972 5.38874 5.45016 5.59624 5.66142 5.70458 5.92574 5.95384 6.14156 6.16282 6.21337 6.26011 6.40779 6.46366 6.50195 6.60545 6.67146 6.76559 6.96356 6.98221 7.15260 7.33188 7.52505 7.68443 7.88967 8.07635 8.18841 8.55198 9.00111 9.63433 11.12131 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.024515 B = 0.014176 C = 0.010933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.872223 B = 1974.733794 C = 2560.351665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.687 5.687 3 C 0.082 3.918 4 C 0.064 3.936 5 H 0.078 0.922 6 C -0.118 4.118 7 C -0.123 4.123 8 C 0.031 3.969 9 N -0.504 5.504 10 C 0.150 3.850 11 H 0.070 0.930 12 C -0.144 4.144 13 C -0.530 4.530 14 H 0.076 0.924 15 C 0.073 3.927 16 N -0.903 5.903 17 Si 0.892 3.108 18 H -0.284 1.284 19 H -0.301 1.301 20 H -0.264 1.264 21 H 0.012 0.988 22 H 0.058 0.942 23 H 0.061 0.939 24 H 0.353 0.647 25 H 0.025 0.975 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.031 0.969 35 H 0.047 0.953 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.441 7.336 -6.479 11.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.323 5.323 3 C -0.048 4.048 4 C -0.045 4.045 5 H 0.096 0.904 6 C -0.157 4.157 7 C -0.161 4.161 8 C -0.098 4.098 9 N -0.228 5.228 10 C 0.041 3.959 11 H 0.088 0.912 12 C -0.201 4.201 13 C -0.568 4.568 14 H 0.094 0.906 15 C -0.129 4.129 16 N -0.541 5.541 17 Si 0.723 3.277 18 H -0.211 1.211 19 H -0.229 1.229 20 H -0.189 1.189 21 H 0.030 0.970 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.176 0.824 25 H 0.043 0.957 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.601 7.166 -6.220 11.019 hybrid contribution -0.122 -0.807 -0.438 0.926 sum -5.723 6.359 -6.657 10.841 Atomic orbital electron populations 1.22186 0.89491 1.01197 0.99389 1.60740 1.05961 1.14359 1.51196 1.21854 0.94925 0.89382 0.98628 1.22578 0.92380 0.92041 0.97478 0.90416 1.22284 0.96533 0.97000 0.99865 1.22267 0.96611 0.97467 0.99753 1.23069 0.92481 0.92612 1.01587 1.65619 1.09023 1.04854 1.43285 1.20197 0.98290 0.84619 0.92783 0.91240 1.22142 1.00591 0.99164 0.98240 1.21495 1.34364 0.95253 1.05736 0.90582 1.24943 0.94568 0.98770 0.94634 1.69920 1.42956 1.21604 1.19651 0.86793 0.80292 0.82063 0.78531 1.21111 1.22917 1.18930 0.96990 0.92295 0.92040 0.82396 0.95676 0.91951 0.92242 0.92214 0.92409 0.92364 0.91974 0.91110 0.94188 0.95022 0.93342 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.66 60.06 0.64 1.04 16 2 N -0.69 -12.54 5.58 -121.12 -0.68 -13.22 16 3 C 0.08 1.39 5.40 -3.82 -0.02 1.37 16 4 C 0.06 1.23 2.54 -66.07 -0.17 1.06 16 5 H 0.08 1.78 6.54 -51.93 -0.34 1.44 16 6 C -0.12 -1.88 6.55 -25.35 -0.17 -2.05 16 7 C -0.12 -1.97 7.00 -25.35 -0.18 -2.15 16 8 C 0.03 0.60 5.45 -2.11 -0.01 0.59 16 9 N -0.50 -10.28 4.96 -215.50 -1.07 -11.35 16 10 C 0.15 3.46 1.55 -68.86 -0.11 3.36 16 11 H 0.07 1.65 3.48 -51.93 -0.18 1.47 16 12 C -0.14 -3.17 8.79 37.16 0.33 -2.85 16 13 C -0.53 -14.48 7.13 -34.44 -0.25 -14.73 16 14 H 0.08 2.27 5.91 -52.48 -0.31 1.96 16 15 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 16 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 17 Si 0.89 22.33 24.41 -169.99 -4.15 18.18 16 18 H -0.28 -6.96 6.83 56.52 0.39 -6.58 16 19 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 20 H -0.26 -6.30 6.53 56.52 0.37 -5.93 16 21 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 22 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.35 6.73 6.15 -39.29 -0.24 6.49 16 25 H 0.03 0.41 8.05 -51.93 -0.42 -0.01 16 26 H 0.06 0.98 8.04 -51.93 -0.42 0.56 16 27 H 0.06 0.85 7.79 -51.93 -0.40 0.45 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.16 7.65 -51.93 -0.40 0.76 16 32 H 0.07 1.60 5.61 -51.93 -0.29 1.31 16 33 H 0.04 0.92 3.22 -51.93 -0.17 0.76 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 1.04 7.03 -51.93 -0.36 0.68 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 264.63 15.07 3.99 3.99 Total: -1.00 -29.39 264.63 -6.83 -36.22 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.67 Total: 5.44 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -0.03 Total: -12.36 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.97 Total: -51.47 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.15 Total: 18.18 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.39 -6.83 -36.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227729055.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.394 kcal (2) G-P(sol) polarization free energy of solvation -29.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds