Wall clock time and date at job start Mon Mar 30 2020 03:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99684 * 2 1 4 4 C 1.53004 * 109.47082 * 168.86373 * 3 2 1 5 5 H 1.08999 * 110.36933 * 295.62071 * 4 3 2 6 6 C 1.54377 * 110.41199 * 173.27086 * 4 3 2 7 7 C 1.54262 * 105.05764 * 217.37210 * 6 4 3 8 8 C 1.54375 * 105.06539 * 359.97438 * 7 6 4 9 9 N 1.48561 * 110.40889 * 57.97097 * 4 3 2 10 10 C 1.46898 * 110.99895 * 277.81677 * 9 4 3 11 11 H 1.08999 * 109.47308 * 56.14907 * 10 9 4 12 12 C 1.53007 * 109.47078 * 176.14657 * 10 9 4 13 13 C 1.50693 * 109.47477 * 296.14679 * 10 9 4 14 14 H 1.08004 * 120.00095 * 359.97438 * 13 10 9 15 15 C 1.37878 * 120.00171 * 180.02562 * 13 10 9 16 16 N 1.31518 * 119.99765 * 180.02562 * 15 13 10 17 17 Si 1.86791 * 120.00136 * 359.97438 * 15 13 10 18 18 H 1.48502 * 109.47341 * 90.00071 * 17 15 13 19 19 H 1.48496 * 109.47375 * 210.00198 * 17 15 13 20 20 H 1.48508 * 109.47197 * 330.00193 * 17 15 13 21 21 H 1.09003 * 109.47235 * 59.99523 * 1 2 3 22 22 H 1.09002 * 109.47340 * 299.99579 * 1 2 3 23 23 H 1.08998 * 109.47157 * 180.02562 * 1 2 3 24 24 H 1.00898 * 111.00496 * 236.04922 * 2 1 3 25 25 H 1.08999 * 109.47481 * 288.86721 * 3 2 1 26 26 H 1.09003 * 109.47114 * 48.86657 * 3 2 1 27 27 H 1.09006 * 110.32113 * 336.26053 * 6 4 3 28 28 H 1.08999 * 110.32824 * 98.37138 * 6 4 3 29 29 H 1.09004 * 110.32165 * 118.89663 * 7 6 4 30 30 H 1.09001 * 110.31853 * 240.99678 * 7 6 4 31 31 H 1.08996 * 110.41309 * 142.63181 * 8 7 6 32 32 H 1.09005 * 110.40774 * 265.08117 * 8 7 6 33 33 H 1.09000 * 109.47037 * 175.71868 * 12 10 9 34 34 H 1.09004 * 109.46912 * 295.71520 * 12 10 9 35 35 H 1.08996 * 109.46699 * 55.71472 * 12 10 9 36 36 H 0.97001 * 119.99737 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4995 1.3405 0.2786 5 1 3.6920 0.9558 1.2802 6 6 4.1061 2.7510 0.1178 7 6 5.4907 2.5212 -0.5223 8 6 5.6045 0.9912 -0.6938 9 7 4.1976 0.5118 -0.7377 10 6 4.1146 -0.9155 -0.4004 11 1 3.0688 -1.2034 -0.2932 12 6 4.7592 -1.7415 -1.5155 13 6 4.8405 -1.1685 0.8958 14 1 5.3164 -0.3508 1.4167 15 6 4.8981 -2.4440 1.4161 16 7 5.5312 -2.6646 2.5476 17 14 4.0758 -3.8584 0.5149 18 1 5.0414 -4.4694 -0.4335 19 1 3.6327 -4.8803 1.4970 20 1 2.8993 -3.3501 -0.2354 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8307 -0.5260 -0.7813 25 1 1.8153 1.8298 -0.9724 26 1 1.4944 1.9529 0.7740 27 1 3.4822 3.3588 -0.5376 28 1 4.2119 3.2308 1.0908 29 1 5.5465 3.0164 -1.4917 30 1 6.2777 2.8892 0.1359 31 1 6.1177 0.7502 -1.6247 32 1 6.1283 0.5515 0.1551 33 1 4.7659 -2.7936 -1.2308 34 1 4.1882 -1.6177 -2.4357 35 1 5.7825 -1.4014 -1.6743 36 1 5.5721 -3.5620 2.9135 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227729055.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:41 Heat of formation + Delta-G solvation = 0.600294 kcal Electronic energy + Delta-G solvation = -15413.423929 eV Core-core repulsion = 13125.137034 eV Total energy + Delta-G solvation = -2288.286895 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.32465 -36.45039 -35.59303 -33.47601 -30.91159 -29.64059 -27.04865 -26.56604 -24.61692 -22.44632 -21.21900 -20.82898 -18.75246 -17.32019 -17.12265 -16.06313 -15.71709 -15.28402 -14.86774 -14.57856 -14.48445 -14.14620 -14.01648 -13.59742 -13.09767 -12.77999 -12.70305 -12.68278 -12.33023 -11.92016 -11.90592 -11.65832 -11.54376 -11.34198 -11.17963 -10.99132 -10.59135 -9.22930 -8.94737 -8.22712 -6.22600 1.32608 1.39574 1.49457 2.37911 3.13658 3.40987 3.44171 3.99741 4.04130 4.26430 4.44407 4.48068 4.61404 4.67878 4.73013 4.75448 4.83790 4.85323 4.90427 4.94662 5.04711 5.08212 5.17874 5.24545 5.29001 5.40518 5.50524 5.58912 5.69470 6.22524 6.23653 6.41730 6.45615 6.54642 6.83467 7.42503 8.93994 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.024515 B = 0.014176 C = 0.010933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.872223 B = 1974.733794 C = 2560.351665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.716 5.716 3 C 0.088 3.912 4 C 0.060 3.940 5 H 0.027 0.973 6 C -0.112 4.112 7 C -0.116 4.116 8 C 0.027 3.973 9 N -0.494 5.494 10 C 0.152 3.848 11 H 0.073 0.927 12 C -0.142 4.142 13 C -0.516 4.516 14 H 0.035 0.965 15 C 0.010 3.990 16 N -0.955 5.955 17 Si 0.951 3.049 18 H -0.273 1.273 19 H -0.308 1.308 20 H -0.241 1.241 21 H 0.031 0.969 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.346 0.654 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.027 0.973 33 H 0.030 0.970 34 H 0.062 0.938 35 H 0.045 0.955 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.029 8.365 -8.796 14.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.351 5.351 3 C -0.042 4.042 4 C -0.049 4.049 5 H 0.046 0.954 6 C -0.150 4.150 7 C -0.154 4.154 8 C -0.101 4.101 9 N -0.217 5.217 10 C 0.043 3.957 11 H 0.090 0.910 12 C -0.200 4.200 13 C -0.555 4.555 14 H 0.053 0.947 15 C -0.186 4.186 16 N -0.597 5.597 17 Si 0.779 3.221 18 H -0.200 1.200 19 H -0.237 1.237 20 H -0.165 1.165 21 H 0.050 0.950 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.168 0.832 25 H 0.061 0.939 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.204 8.226 -8.558 13.885 hybrid contribution 0.401 -1.025 0.329 1.148 sum -6.803 7.201 -8.228 12.878 Atomic orbital electron populations 1.22219 0.87290 1.01911 1.00599 1.60687 1.08255 1.15018 1.51153 1.21817 0.93099 0.89301 0.99939 1.22621 0.94346 0.93500 0.94472 0.95443 1.22285 0.96493 0.95226 1.01037 1.22251 0.97035 0.94633 1.01437 1.23070 0.91684 0.95219 1.00161 1.65642 1.09502 1.03438 1.43123 1.20119 0.97757 0.86813 0.91004 0.90960 1.22074 1.00876 0.98070 0.98933 1.21789 1.32942 0.93839 1.06971 0.94685 1.25786 0.95621 1.01738 0.95459 1.70080 1.45609 1.22099 1.21892 0.85831 0.80214 0.78600 0.77445 1.19997 1.23676 1.16483 0.95033 0.91664 0.91676 0.83229 0.93870 0.90655 0.89442 0.91496 0.89721 0.91700 0.91028 0.95438 0.95142 0.91917 0.93614 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.66 127.69 1.36 2.13 16 2 N -0.72 -24.74 5.58 -537.13 -3.00 -27.74 16 3 C 0.09 2.79 5.40 86.30 0.47 3.25 16 4 C 0.06 2.24 2.54 45.06 0.11 2.35 16 5 H 0.03 1.30 6.54 -2.39 -0.02 1.28 16 6 C -0.11 -3.29 6.55 31.49 0.21 -3.08 16 7 C -0.12 -3.46 7.00 31.49 0.22 -3.24 16 8 C 0.03 1.04 5.45 86.42 0.47 1.51 16 9 N -0.49 -19.58 4.96 -835.70 -4.15 -23.73 16 10 C 0.15 6.96 1.55 44.17 0.07 7.03 16 11 H 0.07 3.34 3.48 -2.39 -0.01 3.33 16 12 C -0.14 -5.99 8.79 71.98 0.63 -5.36 16 13 C -0.52 -29.14 7.13 25.60 0.18 -28.96 16 14 H 0.04 2.23 5.91 -2.91 -0.02 2.21 16 15 C 0.01 0.61 5.45 84.65 0.46 1.07 16 16 N -0.96 -61.04 13.96 21.45 0.30 -60.74 16 17 Si 0.95 46.19 24.41 68.60 1.67 47.87 16 18 H -0.27 -12.73 6.83 99.48 0.68 -12.05 16 19 H -0.31 -15.22 7.11 99.48 0.71 -14.52 16 20 H -0.24 -10.70 6.53 99.48 0.65 -10.05 16 21 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 22 H 0.06 1.63 8.12 -2.39 -0.02 1.61 16 23 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.35 12.43 6.15 -89.70 -0.55 11.87 16 25 H 0.04 1.23 8.05 -2.39 -0.02 1.21 16 26 H 0.08 2.17 8.04 -2.39 -0.02 2.15 16 27 H 0.09 2.12 7.79 -2.38 -0.02 2.11 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 2.58 7.65 -2.39 -0.02 2.56 16 32 H 0.03 1.30 5.61 -2.38 -0.01 1.28 16 33 H 0.03 1.33 3.22 -2.39 -0.01 1.33 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.04 1.91 7.03 -2.39 -0.02 1.90 16 36 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -65.53 264.63 -0.56 -66.09 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.42 Total: 21.55 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: 4.18 Total: -23.30 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -6.85 Total: -112.21 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.67 Total: 47.87 kcal Total: -65.53 -0.56 -66.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227729055.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.694 kcal (2) G-P(sol) polarization free energy of solvation -65.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds