Wall clock time and date at job start Mon Mar 30 2020 02:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47113 * 2 1 4 4 C 1.50700 * 109.47138 * 240.00075 * 2 1 3 5 5 H 1.07995 * 119.99834 * 239.99678 * 4 2 1 6 6 C 1.37874 * 120.00082 * 60.00120 * 4 2 1 7 7 N 1.31513 * 120.00256 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00065 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47034 * 59.99320 * 8 6 4 10 10 H 1.48492 * 109.47189 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46996 * 300.00073 * 8 6 4 12 12 N 1.46892 * 109.47114 * 119.99770 * 2 1 3 13 13 C 1.46903 * 111.00118 * 275.00060 * 12 2 1 14 14 H 1.08996 * 110.62766 * 31.89488 * 13 12 2 15 15 C 1.55147 * 110.70446 * 154.99753 * 13 12 2 16 16 C 1.54908 * 101.65049 * 154.03545 * 15 13 12 17 17 H 1.09005 * 110.37447 * 81.76012 * 16 15 13 18 18 C 1.52993 * 110.37709 * 204.10116 * 16 15 13 19 19 N 1.47845 * 104.79717 * 322.93105 * 16 15 13 20 20 C 1.46904 * 110.99935 * 146.36210 * 19 16 15 21 21 C 1.47439 * 108.56650 * 24.09802 * 19 16 15 22 22 H 1.09005 * 109.47117 * 60.00430 * 1 2 3 23 23 H 1.09000 * 109.47113 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47179 * 300.00356 * 1 2 3 25 25 H 0.96996 * 120.00274 * 180.02562 * 7 6 4 26 26 H 1.00899 * 111.00285 * 151.04898 * 12 2 1 27 27 H 1.08996 * 110.99290 * 272.12974 * 15 13 12 28 28 H 1.09002 * 110.98631 * 35.95218 * 15 13 12 29 29 H 1.09005 * 109.47247 * 59.99625 * 18 16 15 30 30 H 1.08993 * 109.47649 * 180.02562 * 18 16 15 31 31 H 1.09006 * 109.47340 * 300.00454 * 18 16 15 32 32 H 1.09000 * 109.47015 * 299.03030 * 20 19 16 33 33 H 1.08996 * 109.47359 * 59.02980 * 20 19 16 34 34 H 1.09004 * 109.47443 * 179.03468 * 20 19 16 35 35 H 1.09003 * 109.88723 * 239.60536 * 21 19 16 36 36 H 1.08997 * 110.02921 * 118.49255 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.8259 -2.5203 -4.0077 10 1 1.8260 -0.4206 -5.2204 11 1 3.8064 -1.1210 -4.0081 12 7 2.0196 -0.6924 1.1994 13 6 2.0824 0.2227 2.3469 14 1 1.2976 0.9762 2.2805 15 6 1.9778 -0.5624 3.6809 16 6 2.7148 0.3851 4.6601 17 1 2.0465 1.1778 4.9965 18 6 3.2555 -0.4007 5.8563 19 7 3.8290 0.9517 3.8705 20 6 4.1133 2.3342 4.2781 21 6 3.4731 0.8849 2.4413 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7082 1.1608 -3.4844 26 1 2.9173 -1.1204 1.0288 27 1 0.9368 -0.6951 3.9753 28 1 2.4875 -1.5232 3.6095 29 1 3.9527 -1.1618 5.5059 30 1 3.7701 0.2792 6.5351 31 1 2.4282 -0.8796 6.3803 32 1 3.2320 2.9522 4.1061 33 1 4.3707 2.3552 5.3370 34 1 4.9480 2.7210 3.6935 35 1 4.2070 0.2840 1.9041 36 1 3.4352 1.8888 2.0186 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228624326.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:15 Heat of formation + Delta-G solvation = -20.874070 kcal Electronic energy + Delta-G solvation = -14685.967873 eV Core-core repulsion = 12396.749780 eV Total energy + Delta-G solvation = -2289.218093 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.38199 -37.26459 -34.55331 -32.79255 -31.72707 -28.78432 -27.32024 -26.95408 -25.22494 -22.32356 -21.58951 -20.73251 -18.55083 -17.42715 -16.67921 -16.26800 -15.62186 -15.20201 -14.88205 -14.72112 -14.42544 -13.82527 -13.50290 -13.32194 -13.01006 -12.90720 -12.79072 -12.73127 -12.50431 -12.23194 -12.14745 -12.06604 -11.95769 -11.71805 -11.40307 -10.90123 -10.57687 -9.41575 -8.97277 -8.14224 -6.28565 1.42373 1.44295 1.51903 2.41061 2.97004 3.14462 3.49594 3.81851 3.90020 4.09396 4.24676 4.42811 4.48703 4.49355 4.56822 4.76349 4.81080 4.88528 4.95171 4.98537 5.04177 5.07341 5.16035 5.21981 5.23535 5.46296 5.49040 5.67459 5.84097 5.95660 6.15447 6.20292 6.46952 6.75991 6.98777 7.42063 8.91384 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049971 B = 0.006831 C = 0.006679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.191424 B = 4098.089478 C = 4191.408469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.218 3.782 3 H -0.032 1.032 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.963 3.037 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.673 5.673 13 C 0.067 3.933 14 H 0.058 0.942 15 C -0.104 4.104 16 C 0.064 3.936 17 H 0.056 0.944 18 C -0.125 4.125 19 N -0.534 5.534 20 C 0.020 3.980 21 C 0.025 3.975 22 H 0.057 0.943 23 H 0.028 0.972 24 H 0.018 0.982 25 H 0.263 0.737 26 H 0.335 0.665 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.022 0.978 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.962 0.303 13.458 14.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.109 3.891 3 H -0.014 1.014 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.788 3.212 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.304 5.304 13 C -0.045 4.045 14 H 0.076 0.924 15 C -0.142 4.142 16 C -0.044 4.044 17 H 0.075 0.925 18 C -0.182 4.182 19 N -0.259 5.259 20 C -0.128 4.128 21 C -0.105 4.105 22 H 0.075 0.925 23 H 0.047 0.953 24 H 0.037 0.963 25 H 0.072 0.928 26 H 0.153 0.847 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.041 0.959 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.708 -0.109 13.570 14.068 hybrid contribution 0.171 0.997 -1.580 1.876 sum 3.880 0.888 11.989 12.633 Atomic orbital electron populations 1.21560 0.97903 0.98868 0.98849 1.18888 0.92531 0.90740 0.86920 1.01399 1.21565 1.31771 1.12762 0.91629 0.92220 1.25737 0.95124 0.95651 1.02072 1.70015 1.37423 1.24108 1.24251 0.85539 0.78732 0.78678 0.78242 1.19598 1.20919 1.19573 1.60689 1.32317 1.32269 1.05081 1.22801 0.95005 0.93968 0.92688 0.92399 1.22706 1.00716 0.98613 0.92200 1.22694 0.90690 0.96401 0.94591 0.92550 1.21623 1.01245 0.99719 0.95642 1.63540 1.39981 1.20091 1.02299 1.22579 1.00138 0.87774 1.02335 1.23437 0.97066 0.99867 0.90104 0.92451 0.95255 0.96260 0.92824 0.84686 0.90415 0.90535 0.92611 0.92050 0.90941 0.95939 0.89604 0.91494 0.91574 0.94276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.78 9.18 71.98 0.66 -5.12 16 2 C 0.22 11.26 2.47 44.17 0.11 11.37 16 3 H -0.03 -1.80 7.86 -2.39 -0.02 -1.82 16 4 C -0.54 -29.91 8.59 25.60 0.22 -29.69 16 5 H 0.06 3.23 7.62 -2.91 -0.02 3.21 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -53.40 11.32 21.45 0.24 -53.16 16 8 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 N -0.67 -29.02 6.18 -467.29 -2.89 -31.91 16 13 C 0.07 2.45 3.02 46.10 0.14 2.59 16 14 H 0.06 2.29 7.22 -2.39 -0.02 2.27 16 15 C -0.10 -3.03 6.18 31.98 0.20 -2.83 16 16 C 0.06 1.61 3.05 45.38 0.14 1.75 16 17 H 0.06 1.36 7.79 -2.38 -0.02 1.34 16 18 C -0.12 -2.48 9.59 71.98 0.69 -1.79 16 19 N -0.53 -15.07 5.10 -886.66 -4.52 -19.59 16 20 C 0.02 0.47 9.12 127.69 1.16 1.64 16 21 C 0.03 0.86 6.61 86.65 0.57 1.43 16 22 H 0.06 3.19 6.07 -2.38 -0.01 3.18 16 23 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.02 0.87 7.51 -2.39 -0.02 0.85 16 25 H 0.26 14.51 8.31 -92.71 -0.77 13.73 16 26 H 0.33 14.25 7.54 -89.70 -0.68 13.57 16 27 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.08 2.27 8.06 -2.39 -0.02 2.25 16 29 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.02 0.53 8.11 -2.39 -0.02 0.51 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 2.40 7.49 -2.39 -0.02 2.38 16 36 H 0.04 1.40 7.59 -2.39 -0.02 1.38 16 Total: -1.00 -59.36 284.72 -0.44 -59.80 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.35 Total: 18.58 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: 4.34 Total: -19.46 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -7.17 Total: -104.65 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -59.36 -0.44 -59.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228624326.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.928 kcal (2) G-P(sol) polarization free energy of solvation -59.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds