Wall clock time and date at job start Mon Mar 30 2020 02:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.50620 * 2 1 4 4 C 1.53038 * 109.50331 * 239.87718 * 2 1 3 5 5 N 1.46830 * 109.51757 * 299.23944 * 4 2 1 6 6 C 1.46901 * 110.98168 * 174.15669 * 5 4 2 7 7 C 1.46847 * 111.21086 * 298.25173 * 5 4 2 8 8 C 1.53044 * 109.51335 * 61.74856 * 7 5 4 9 9 C 1.53117 * 109.27792 * 300.82256 * 8 7 5 10 10 H 1.09004 * 109.52347 * 297.75632 * 9 8 7 11 11 N 1.46896 * 109.52240 * 177.62400 * 9 8 7 12 12 C 1.46903 * 111.00120 * 85.00178 * 11 9 8 13 13 C 1.50696 * 109.47470 * 180.02562 * 12 11 9 14 14 H 1.08004 * 119.99773 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00156 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00324 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99946 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47296 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46874 * 120.00073 * 17 15 13 20 20 H 1.48500 * 109.47341 * 239.99745 * 17 15 13 21 21 H 1.09002 * 109.47352 * 299.92730 * 1 2 3 22 22 H 1.09001 * 109.46576 * 59.92351 * 1 2 3 23 23 H 1.08996 * 109.47348 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46433 * 59.25895 * 4 2 1 25 25 H 1.09004 * 109.46006 * 179.22600 * 4 2 1 26 26 H 1.09001 * 109.46924 * 180.26109 * 6 5 4 27 27 H 1.09000 * 109.46915 * 300.26098 * 6 5 4 28 28 H 1.08999 * 109.47074 * 60.26281 * 6 5 4 29 29 H 1.09002 * 109.46448 * 301.73578 * 7 5 4 30 30 H 1.08994 * 109.45958 * 181.75943 * 7 5 4 31 31 H 1.09001 * 109.49858 * 60.76701 * 8 7 5 32 32 H 1.09000 * 109.49965 * 180.88251 * 8 7 5 33 33 H 1.00897 * 111.00279 * 208.95669 * 11 9 8 34 34 H 1.09007 * 109.46972 * 300.00111 * 12 11 9 35 35 H 1.09001 * 109.47001 * 59.99417 * 12 11 9 36 36 H 0.96993 * 120.00456 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0409 -0.7240 -1.2478 5 7 1.5675 -2.1138 -1.2369 6 6 1.9223 -2.8001 -2.4863 7 6 2.0845 -2.8421 -0.0712 8 6 1.5748 -2.1813 1.2117 9 6 2.0411 -0.7234 1.2491 10 1 3.1304 -0.6898 1.2693 11 7 1.5073 -0.0679 2.4505 12 6 2.3749 -0.3087 3.6112 13 6 1.7962 0.3768 4.8219 14 1 0.8755 0.9353 4.7377 15 6 2.4418 0.2912 6.0371 16 7 3.5626 -0.3892 6.1398 17 14 1.7247 1.1416 7.5377 18 1 0.4669 1.8349 7.1600 19 1 1.4367 0.1323 8.5882 20 1 2.7000 2.1332 8.0581 21 1 -0.3634 0.5127 0.8906 22 1 -0.3632 0.5150 -0.8893 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6670 -0.2198 -2.1388 25 1 3.1309 -0.7116 -1.2540 26 1 1.5559 -3.8262 -2.4538 27 1 1.4682 -2.2786 -3.3289 28 1 3.0060 -2.8048 -2.6032 29 1 3.1742 -2.8198 -0.0830 30 1 1.7420 -3.8762 -0.1080 31 1 0.4855 -2.2157 1.2306 32 1 1.9713 -2.7126 2.0769 33 1 1.3769 0.9205 2.2954 34 1 2.4421 -1.3805 3.7984 35 1 3.3700 0.0879 3.4095 36 1 4.0170 -0.4492 6.9946 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229603476.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:26 Heat of formation + Delta-G solvation = -6.817440 kcal Electronic energy + Delta-G solvation = -14703.759380 eV Core-core repulsion = 12415.150828 eV Total energy + Delta-G solvation = -2288.608552 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.27503 -35.47054 -33.09303 -31.72537 -30.65128 -26.95764 -26.60005 -24.80620 -22.66348 -22.03460 -20.90988 -18.30332 -16.48661 -15.69072 -14.98177 -14.78484 -14.64190 -14.29455 -14.00545 -13.21945 -12.70681 -12.64445 -12.32921 -12.10372 -11.86822 -11.38011 -11.25931 -11.12222 -10.96540 -10.85619 -10.66883 -10.42784 -10.05183 -9.93373 -9.58943 -9.08284 -8.45697 -8.20608 -7.22201 -6.00811 -4.02355 3.32514 3.39704 3.45087 4.04483 4.45214 4.97224 5.04362 5.12908 5.28902 5.35264 5.40772 5.45903 5.59898 5.65690 5.79739 5.82474 5.84406 5.98175 6.11108 6.16546 6.28401 6.36792 6.55695 6.59961 6.74741 6.97459 7.18725 7.21586 7.32795 7.46670 7.83346 8.17713 8.46702 8.67425 9.07970 9.62677 11.10441 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.061047 B = 0.006418 C = 0.006089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.552309 B = 4361.532381 C = 4597.379941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.090 4.090 3 H 0.066 0.934 4 C 0.064 3.936 5 N -0.539 5.539 6 C 0.026 3.974 7 C 0.056 3.944 8 C -0.104 4.104 9 C 0.091 3.909 10 H 0.028 0.972 11 N -0.682 5.682 12 C 0.194 3.806 13 C -0.511 4.511 14 H 0.063 0.937 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 H 0.060 0.940 22 H 0.037 0.963 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.028 0.972 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.020 0.980 29 H 0.028 0.972 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.328 0.672 34 H 0.028 0.972 35 H -0.017 1.017 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.684 -2.430 -14.664 15.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.110 4.110 3 H 0.084 0.916 4 C -0.065 4.065 5 N -0.263 5.263 6 C -0.123 4.123 7 C -0.072 4.072 8 C -0.142 4.142 9 C -0.020 4.020 10 H 0.046 0.954 11 N -0.312 5.312 12 C 0.067 3.933 13 C -0.550 4.550 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.212 1.212 21 H 0.079 0.921 22 H 0.056 0.944 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.046 0.954 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.039 0.961 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.145 0.855 34 H 0.046 0.954 35 H 0.001 0.999 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.482 -2.990 -14.329 15.046 hybrid contribution 1.550 0.921 0.626 1.908 sum -1.933 -2.070 -13.704 13.993 Atomic orbital electron populations 1.21625 0.93833 1.02698 1.00398 1.21348 0.97794 0.98055 0.93760 0.91584 1.22093 0.96857 0.88921 0.98597 1.61914 1.59934 1.02224 1.02244 1.22334 0.98257 0.99390 0.92296 1.22153 0.96845 0.97466 0.90720 1.21593 1.02292 0.95261 0.95053 1.21468 0.95753 0.94540 0.90213 0.95441 1.60689 1.51478 1.15911 1.03121 1.19590 0.89620 0.97147 0.86910 1.21246 1.08600 1.31821 0.93322 0.91922 1.24992 0.94950 0.95640 0.99057 1.69974 1.17062 1.41654 1.25212 0.86442 0.79073 0.79231 0.82661 1.19640 1.21024 1.21157 0.92057 0.94414 0.91451 0.91105 0.95365 0.91583 0.91686 0.96096 0.95369 0.91042 0.90388 0.91484 0.85489 0.95436 0.99901 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.56 37.16 0.32 -1.56 16 2 C -0.09 -1.36 2.61 -90.54 -0.24 -1.59 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 4 C 0.06 0.84 4.90 -3.84 -0.02 0.83 16 5 N -0.54 -7.12 4.19 -242.97 -1.02 -8.14 16 6 C 0.03 0.27 9.59 60.07 0.58 0.85 16 7 C 0.06 0.80 5.47 -3.83 -0.02 0.78 16 8 C -0.10 -1.77 5.23 -26.65 -0.14 -1.91 16 9 C 0.09 1.66 2.25 -67.59 -0.15 1.51 16 10 H 0.03 0.55 7.80 -51.93 -0.41 0.14 16 11 N -0.68 -14.74 5.54 -107.86 -0.60 -15.34 16 12 C 0.19 5.16 5.24 -4.98 -0.03 5.13 16 13 C -0.51 -14.66 9.32 -34.44 -0.32 -14.98 16 14 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 15 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 17 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H 0.06 0.97 7.35 -51.93 -0.38 0.59 16 22 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.07 1.04 6.01 -51.93 -0.31 0.73 16 24 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 31 H 0.08 1.37 6.58 -51.93 -0.34 1.03 16 32 H 0.07 1.26 7.52 -51.93 -0.39 0.87 16 33 H 0.33 6.84 8.09 -39.29 -0.32 6.52 16 34 H 0.03 0.79 7.49 -51.92 -0.39 0.40 16 35 H -0.02 -0.48 8.06 -51.93 -0.42 -0.90 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 280.68 15.07 4.23 4.23 Total: -1.00 -29.82 280.68 -8.09 -37.91 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.30 Total: 0.40 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -0.12 Total: -9.47 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.88 Total: -49.96 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.82 -8.09 -37.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229603476.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.095 kcal (2) G-P(sol) polarization free energy of solvation -29.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds