Wall clock time and date at job start Mon Mar 30 2020 02:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.50620 * 2 1 4 4 C 1.53038 * 109.50331 * 239.87718 * 2 1 3 5 5 N 1.46830 * 109.51757 * 299.23944 * 4 2 1 6 6 C 1.46901 * 110.98168 * 174.15669 * 5 4 2 7 7 C 1.46847 * 111.21086 * 298.25173 * 5 4 2 8 8 C 1.53044 * 109.51335 * 61.74856 * 7 5 4 9 9 C 1.53117 * 109.27792 * 300.82256 * 8 7 5 10 10 H 1.09004 * 109.52347 * 297.75632 * 9 8 7 11 11 N 1.46896 * 109.52240 * 177.62400 * 9 8 7 12 12 C 1.46903 * 111.00120 * 85.00178 * 11 9 8 13 13 C 1.50696 * 109.47470 * 180.02562 * 12 11 9 14 14 H 1.08004 * 119.99773 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00156 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00324 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99946 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47296 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46874 * 120.00073 * 17 15 13 20 20 H 1.48500 * 109.47341 * 239.99745 * 17 15 13 21 21 H 1.09002 * 109.47352 * 299.92730 * 1 2 3 22 22 H 1.09001 * 109.46576 * 59.92351 * 1 2 3 23 23 H 1.08996 * 109.47348 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46433 * 59.25895 * 4 2 1 25 25 H 1.09004 * 109.46006 * 179.22600 * 4 2 1 26 26 H 1.09001 * 109.46924 * 180.26109 * 6 5 4 27 27 H 1.09000 * 109.46915 * 300.26098 * 6 5 4 28 28 H 1.08999 * 109.47074 * 60.26281 * 6 5 4 29 29 H 1.09002 * 109.46448 * 301.73578 * 7 5 4 30 30 H 1.08994 * 109.45958 * 181.75943 * 7 5 4 31 31 H 1.09001 * 109.49858 * 60.76701 * 8 7 5 32 32 H 1.09000 * 109.49965 * 180.88251 * 8 7 5 33 33 H 1.00897 * 111.00279 * 208.95669 * 11 9 8 34 34 H 1.09007 * 109.46972 * 300.00111 * 12 11 9 35 35 H 1.09001 * 109.47001 * 59.99417 * 12 11 9 36 36 H 0.96993 * 120.00456 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0409 -0.7240 -1.2478 5 7 1.5675 -2.1138 -1.2369 6 6 1.9223 -2.8001 -2.4863 7 6 2.0845 -2.8421 -0.0712 8 6 1.5748 -2.1813 1.2117 9 6 2.0411 -0.7234 1.2491 10 1 3.1304 -0.6898 1.2693 11 7 1.5073 -0.0679 2.4505 12 6 2.3749 -0.3087 3.6112 13 6 1.7962 0.3768 4.8219 14 1 0.8755 0.9353 4.7377 15 6 2.4418 0.2912 6.0371 16 7 3.5626 -0.3892 6.1398 17 14 1.7247 1.1416 7.5377 18 1 0.4669 1.8349 7.1600 19 1 1.4367 0.1323 8.5882 20 1 2.7000 2.1332 8.0581 21 1 -0.3634 0.5127 0.8906 22 1 -0.3632 0.5150 -0.8893 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6670 -0.2198 -2.1388 25 1 3.1309 -0.7116 -1.2540 26 1 1.5559 -3.8262 -2.4538 27 1 1.4682 -2.2786 -3.3289 28 1 3.0060 -2.8048 -2.6032 29 1 3.1742 -2.8198 -0.0830 30 1 1.7420 -3.8762 -0.1080 31 1 0.4855 -2.2157 1.2306 32 1 1.9713 -2.7126 2.0769 33 1 1.3769 0.9205 2.2954 34 1 2.4421 -1.3805 3.7984 35 1 3.3700 0.0879 3.4095 36 1 4.0170 -0.4492 6.9946 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229603476.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:26 Heat of formation + Delta-G solvation = -27.563229 kcal Electronic energy + Delta-G solvation = -14704.658985 eV Core-core repulsion = 12415.150828 eV Total energy + Delta-G solvation = -2289.508157 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.53500 -37.00674 -34.98649 -33.30226 -32.10196 -28.72421 -27.79707 -26.22301 -24.33445 -23.31029 -22.55615 -19.68554 -18.51802 -16.99202 -16.74025 -16.30733 -15.80127 -15.70781 -15.57336 -14.69367 -14.25597 -14.09339 -13.72556 -13.61628 -13.18416 -13.02624 -12.73915 -12.65629 -12.40358 -12.26215 -12.16230 -12.03274 -11.78359 -11.44063 -11.12495 -11.00398 -10.67030 -9.24279 -9.09875 -8.23328 -6.34699 1.40554 1.41536 1.55700 2.39691 3.01439 3.10009 3.50433 3.78130 3.89655 4.18106 4.24564 4.32776 4.48579 4.56608 4.62812 4.70145 4.74624 4.82677 4.93132 4.96656 5.05269 5.05536 5.11332 5.21560 5.29828 5.33734 5.42920 5.62196 5.70892 6.03468 6.11563 6.19188 6.47599 6.74266 6.90435 7.36759 8.88751 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.061047 B = 0.006418 C = 0.006089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.552309 B = 4361.532381 C = 4597.379941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.086 4.086 3 H 0.071 0.929 4 C 0.067 3.933 5 N -0.545 5.545 6 C 0.026 3.974 7 C 0.065 3.935 8 C -0.099 4.099 9 C 0.088 3.912 10 H 0.006 0.994 11 N -0.676 5.676 12 C 0.212 3.788 13 C -0.533 4.533 14 H 0.065 0.935 15 C 0.000 4.000 16 N -0.937 5.937 17 Si 0.975 3.025 18 H -0.261 1.261 19 H -0.278 1.278 20 H -0.277 1.277 21 H 0.044 0.956 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.096 0.904 25 H 0.025 0.975 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.333 0.667 34 H -0.002 1.002 35 H -0.047 1.047 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.793 -1.904 -15.807 16.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.105 4.105 3 H 0.090 0.910 4 C -0.061 4.061 5 N -0.270 5.270 6 C -0.122 4.122 7 C -0.064 4.064 8 C -0.137 4.137 9 C -0.022 4.022 10 H 0.024 0.976 11 N -0.307 5.307 12 C 0.084 3.916 13 C -0.572 4.572 14 H 0.083 0.917 15 C -0.198 4.198 16 N -0.577 5.577 17 Si 0.799 3.201 18 H -0.185 1.185 19 H -0.204 1.204 20 H -0.203 1.203 21 H 0.063 0.937 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.115 0.885 25 H 0.043 0.957 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.151 0.849 34 H 0.016 0.984 35 H -0.029 1.029 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.600 -2.467 -15.505 16.360 hybrid contribution 1.912 0.727 0.929 2.247 sum -2.688 -1.740 -14.576 14.924 Atomic orbital electron populations 1.21539 0.93135 1.02263 1.00797 1.21322 0.98218 0.98155 0.92776 0.91023 1.22084 0.96696 0.89077 0.98269 1.61915 1.59952 1.02269 1.02859 1.22415 0.98686 0.99938 0.91175 1.22024 0.96413 0.98130 0.89820 1.21507 1.01850 0.94405 0.95984 1.21595 0.94547 0.95607 0.90488 0.97596 1.60599 1.50262 1.16510 1.03304 1.19203 0.88897 0.94835 0.88697 1.21588 1.08902 1.32283 0.94379 0.91662 1.25983 0.95171 0.96137 1.02525 1.70105 1.18439 1.42803 1.26351 0.85251 0.78595 0.78120 0.78115 1.18538 1.20384 1.20277 0.93658 0.91963 0.92244 0.88538 0.95714 0.90554 0.89997 0.95807 0.95899 0.89341 0.90742 0.94258 0.84906 0.98368 1.02925 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.30 8.56 71.98 0.62 -2.69 16 2 C -0.09 -2.47 2.61 -10.74 -0.03 -2.50 16 3 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 4 C 0.07 1.62 4.90 86.33 0.42 2.04 16 5 N -0.55 -13.16 4.19 -922.62 -3.87 -17.02 16 6 C 0.03 0.46 9.59 127.69 1.22 1.68 16 7 C 0.06 1.78 5.47 86.33 0.47 2.25 16 8 C -0.10 -3.46 5.23 30.65 0.16 -3.30 16 9 C 0.09 3.28 2.25 45.00 0.10 3.38 16 10 H 0.01 0.25 7.80 -2.38 -0.02 0.23 16 11 N -0.68 -30.13 5.54 -495.15 -2.74 -32.87 16 12 C 0.21 11.77 5.24 85.56 0.45 12.22 16 13 C -0.53 -31.19 9.32 25.60 0.24 -30.95 16 14 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 15 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 16 N -0.94 -57.86 13.29 21.45 0.28 -57.58 16 17 Si 0.98 45.02 29.54 68.60 2.03 47.05 16 18 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 H 0.04 1.38 7.35 -2.39 -0.02 1.36 16 22 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.06 1.73 6.01 -2.39 -0.01 1.72 16 24 H 0.10 1.89 8.12 -2.39 -0.02 1.87 16 25 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 27 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 28 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 2.14 8.09 -2.39 -0.02 2.12 16 31 H 0.07 2.64 6.58 -2.39 -0.02 2.62 16 32 H 0.04 1.56 7.52 -2.39 -0.02 1.54 16 33 H 0.33 14.13 8.09 -89.70 -0.73 13.40 16 34 H 0.00 -0.11 7.49 -2.38 -0.02 -0.13 16 35 H -0.05 -2.83 8.06 -2.39 -0.02 -2.85 16 36 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -64.83 280.68 0.12 -64.71 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.31 Total: 13.13 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 4.12 Total: -17.41 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -6.33 Total: -107.47 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -64.83 0.12 -64.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229603476.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.145 kcal (2) G-P(sol) polarization free energy of solvation -64.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds