Wall clock time and date at job start Mon Mar 30 2020 02:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.53415 * 2 1 4 4 C 1.53033 * 109.50495 * 120.09864 * 2 1 3 5 5 N 1.46853 * 109.52262 * 179.11959 * 4 2 1 6 6 C 1.46906 * 110.99832 * 174.16246 * 5 4 2 7 7 C 1.46844 * 111.20068 * 298.25891 * 5 4 2 8 8 C 1.53045 * 109.52143 * 61.74346 * 7 5 4 9 9 C 1.53112 * 109.50583 * 239.90619 * 2 1 3 10 10 H 1.09005 * 109.52421 * 302.30856 * 9 2 1 11 11 N 1.46904 * 109.52346 * 62.49297 * 9 2 1 12 12 C 1.46896 * 111.00366 * 204.68411 * 11 9 2 13 13 C 1.50696 * 109.47379 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00208 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00237 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00029 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00355 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47097 * 89.99832 * 17 15 13 19 19 H 1.48500 * 109.47307 * 210.00177 * 17 15 13 20 20 H 1.48506 * 109.46784 * 329.99819 * 17 15 13 21 21 H 1.09000 * 109.47082 * 180.10165 * 1 2 3 22 22 H 1.09002 * 109.47309 * 300.09353 * 1 2 3 23 23 H 1.09000 * 109.47564 * 60.09405 * 1 2 3 24 24 H 1.09001 * 109.46325 * 59.10519 * 4 2 1 25 25 H 1.09003 * 109.46551 * 299.13949 * 4 2 1 26 26 H 1.08999 * 109.46692 * 180.26236 * 6 5 4 27 27 H 1.09002 * 109.46991 * 300.25614 * 6 5 4 28 28 H 1.09000 * 109.47202 * 60.25906 * 6 5 4 29 29 H 1.09000 * 109.46299 * 181.75606 * 7 5 4 30 30 H 1.08998 * 109.46010 * 301.73940 * 7 5 4 31 31 H 1.08996 * 109.50312 * 60.75518 * 8 7 5 32 32 H 1.08994 * 109.50179 * 180.87913 * 8 7 5 33 33 H 1.00907 * 110.99672 * 80.73376 * 11 9 2 34 34 H 1.09006 * 109.47406 * 300.00623 * 12 11 9 35 35 H 1.09004 * 109.46809 * 60.00101 * 12 11 9 36 36 H 0.96997 * 120.00297 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0409 -0.7234 1.2480 5 7 3.5093 -0.7421 1.2378 6 6 4.0373 -1.3059 2.4874 7 6 4.0230 -1.4729 0.0723 8 6 3.5712 -0.7717 -1.2109 9 6 2.0412 -0.7237 -1.2487 10 1 1.6452 -1.7391 -1.2691 11 7 1.6023 -0.0002 -2.4496 12 6 1.5397 -0.8973 -3.6112 13 6 1.0875 -0.1214 -4.8213 14 1 0.8689 0.9328 -4.7362 15 6 0.9528 -0.7573 -6.0372 16 7 1.2184 -2.0413 -6.1409 17 14 0.3929 0.2045 -7.5375 18 1 1.5776 0.7599 -8.2398 19 1 -0.3490 -0.6970 -8.4551 20 1 -0.4950 1.3155 -7.1101 21 1 -0.3633 -1.0277 0.0018 22 1 -0.3634 0.5153 0.8891 23 1 -0.3634 0.5124 -0.8908 24 1 1.6648 -1.7464 1.2544 25 1 1.6905 -0.2023 2.1390 26 1 5.1268 -1.3036 2.4551 27 1 3.6975 -0.7035 3.3299 28 1 3.6793 -2.3288 2.6042 29 1 5.1121 -1.4961 0.1093 30 1 3.6373 -2.4923 0.0841 31 1 3.9676 0.2434 -1.2298 32 1 3.9395 -1.3232 -2.0759 33 1 2.2019 0.7900 -2.6350 34 1 2.5273 -1.3189 -3.7984 35 1 0.8330 -1.7026 -3.4105 36 1 1.1233 -2.4887 -6.9962 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229603483.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:29 Heat of formation + Delta-G solvation = -11.255172 kcal Electronic energy + Delta-G solvation = -14629.698940 eV Core-core repulsion = 12340.897954 eV Total energy + Delta-G solvation = -2288.800987 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.12772 -35.49855 -33.15844 -32.09182 -30.57456 -26.94452 -26.52881 -24.69411 -22.56592 -21.31340 -21.04935 -19.46341 -16.43522 -15.44854 -15.12284 -14.77278 -14.46027 -14.03458 -13.98908 -13.59028 -12.57657 -12.37037 -12.22398 -12.12262 -11.99458 -11.65316 -11.43365 -11.13004 -10.89149 -10.74978 -10.70068 -10.34175 -10.19977 -10.10183 -9.67939 -9.10476 -8.46134 -8.26184 -7.18011 -6.01018 -4.02649 3.33224 3.39215 3.43979 4.02187 4.44957 5.01000 5.04583 5.10600 5.28888 5.34961 5.41504 5.49084 5.56913 5.66957 5.76129 5.79499 5.93416 5.98170 6.00422 6.06639 6.24664 6.35252 6.44549 6.58018 6.80932 6.81937 7.15731 7.20036 7.31310 7.48388 7.82282 8.16789 8.45754 8.67148 9.07341 9.62291 11.10055 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055007 B = 0.006492 C = 0.006094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.902485 B = 4312.260267 C = 4593.605139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.075 4.075 3 H 0.073 0.927 4 C 0.061 3.939 5 N -0.545 5.545 6 C 0.026 3.974 7 C 0.061 3.939 8 C -0.146 4.146 9 C 0.092 3.908 10 H 0.065 0.935 11 N -0.681 5.681 12 C 0.195 3.805 13 C -0.512 4.512 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 H 0.044 0.956 22 H 0.040 0.960 23 H 0.076 0.924 24 H 0.030 0.970 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.021 0.979 29 H 0.068 0.932 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.329 0.671 34 H -0.014 1.014 35 H 0.025 0.975 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.742 1.389 14.146 14.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.094 4.094 3 H 0.092 0.908 4 C -0.067 4.067 5 N -0.269 5.269 6 C -0.123 4.123 7 C -0.068 4.068 8 C -0.185 4.185 9 C -0.020 4.020 10 H 0.083 0.917 11 N -0.310 5.310 12 C 0.069 3.931 13 C -0.551 4.551 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.726 3.274 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.198 1.198 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.095 0.905 24 H 0.048 0.952 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.040 0.960 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.146 0.854 34 H 0.003 0.997 35 H 0.043 0.957 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.212 1.651 14.102 14.557 hybrid contribution 0.476 -0.701 -1.011 1.319 sum 3.688 0.950 13.091 13.634 Atomic orbital electron populations 1.21646 0.94565 1.01306 1.01719 1.21111 0.95801 0.99812 0.92718 0.90828 1.22205 0.86559 0.98963 0.98996 1.61936 1.08655 1.54059 1.02238 1.22332 1.00318 0.97348 0.92266 1.22048 0.99252 0.94954 0.90517 1.22361 0.98646 1.01299 0.96217 1.21583 0.91256 0.97468 0.91672 0.91654 1.60720 1.54897 1.11142 1.04217 1.19551 0.95142 0.91978 0.86472 1.21208 1.44752 0.96212 0.92941 0.91999 1.24989 0.95645 0.94923 0.99035 1.69965 1.49520 1.09139 1.25252 0.86498 0.78713 0.79752 0.82441 1.20760 1.21297 1.19771 0.93669 0.94121 0.90475 0.95180 0.91158 0.91662 0.91610 0.95996 0.91316 0.95139 0.91342 0.91327 0.85445 0.99663 0.95680 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 9.06 37.15 0.34 -1.70 16 2 C -0.07 -1.15 2.58 -90.55 -0.23 -1.39 16 3 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.06 0.82 4.75 -3.83 -0.02 0.81 16 5 N -0.54 -7.32 4.91 -242.95 -1.19 -8.51 16 6 C 0.03 0.27 9.59 60.07 0.58 0.85 16 7 C 0.06 0.86 5.46 -3.83 -0.02 0.84 16 8 C -0.15 -2.39 5.35 -26.65 -0.14 -2.53 16 9 C 0.09 1.65 1.95 -67.59 -0.13 1.51 16 10 H 0.07 1.28 7.81 -51.93 -0.41 0.88 16 11 N -0.68 -14.54 5.59 -107.86 -0.60 -15.15 16 12 C 0.20 5.12 5.24 -4.98 -0.03 5.10 16 13 C -0.51 -14.59 9.32 -34.44 -0.32 -14.91 16 14 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 17 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.08 1.33 7.68 -51.93 -0.40 0.93 16 24 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 26 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 32 H 0.07 1.22 7.52 -51.93 -0.39 0.83 16 33 H 0.33 6.84 8.44 -39.29 -0.33 6.50 16 34 H -0.01 -0.40 7.49 -51.93 -0.39 -0.79 16 35 H 0.03 0.72 8.06 -51.93 -0.42 0.30 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 285.94 15.07 4.31 4.31 Total: -1.00 -29.45 285.94 -8.37 -37.82 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.52 Total: 0.97 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -0.08 Total: -9.93 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -1.06 Total: -49.99 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.45 -8.37 -37.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229603483.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.567 kcal (2) G-P(sol) polarization free energy of solvation -29.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds