Wall clock time and date at job start Mon Mar 30 2020 02:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.53415 * 2 1 4 4 C 1.53033 * 109.50495 * 120.09864 * 2 1 3 5 5 N 1.46853 * 109.52262 * 179.11959 * 4 2 1 6 6 C 1.46906 * 110.99832 * 174.16246 * 5 4 2 7 7 C 1.46844 * 111.20068 * 298.25891 * 5 4 2 8 8 C 1.53045 * 109.52143 * 61.74346 * 7 5 4 9 9 C 1.53112 * 109.50583 * 239.90619 * 2 1 3 10 10 H 1.09005 * 109.52421 * 302.30856 * 9 2 1 11 11 N 1.46904 * 109.52346 * 62.49297 * 9 2 1 12 12 C 1.46896 * 111.00366 * 204.68411 * 11 9 2 13 13 C 1.50696 * 109.47379 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00208 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00237 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00029 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00355 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47097 * 89.99832 * 17 15 13 19 19 H 1.48500 * 109.47307 * 210.00177 * 17 15 13 20 20 H 1.48506 * 109.46784 * 329.99819 * 17 15 13 21 21 H 1.09000 * 109.47082 * 180.10165 * 1 2 3 22 22 H 1.09002 * 109.47309 * 300.09353 * 1 2 3 23 23 H 1.09000 * 109.47564 * 60.09405 * 1 2 3 24 24 H 1.09001 * 109.46325 * 59.10519 * 4 2 1 25 25 H 1.09003 * 109.46551 * 299.13949 * 4 2 1 26 26 H 1.08999 * 109.46692 * 180.26236 * 6 5 4 27 27 H 1.09002 * 109.46991 * 300.25614 * 6 5 4 28 28 H 1.09000 * 109.47202 * 60.25906 * 6 5 4 29 29 H 1.09000 * 109.46299 * 181.75606 * 7 5 4 30 30 H 1.08998 * 109.46010 * 301.73940 * 7 5 4 31 31 H 1.08996 * 109.50312 * 60.75518 * 8 7 5 32 32 H 1.08994 * 109.50179 * 180.87913 * 8 7 5 33 33 H 1.00907 * 110.99672 * 80.73376 * 11 9 2 34 34 H 1.09006 * 109.47406 * 300.00623 * 12 11 9 35 35 H 1.09004 * 109.46809 * 60.00101 * 12 11 9 36 36 H 0.96997 * 120.00297 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0409 -0.7234 1.2480 5 7 3.5093 -0.7421 1.2378 6 6 4.0373 -1.3059 2.4874 7 6 4.0230 -1.4729 0.0723 8 6 3.5712 -0.7717 -1.2109 9 6 2.0412 -0.7237 -1.2487 10 1 1.6452 -1.7391 -1.2691 11 7 1.6023 -0.0002 -2.4496 12 6 1.5397 -0.8973 -3.6112 13 6 1.0875 -0.1214 -4.8213 14 1 0.8689 0.9328 -4.7362 15 6 0.9528 -0.7573 -6.0372 16 7 1.2184 -2.0413 -6.1409 17 14 0.3929 0.2045 -7.5375 18 1 1.5776 0.7599 -8.2398 19 1 -0.3490 -0.6970 -8.4551 20 1 -0.4950 1.3155 -7.1101 21 1 -0.3633 -1.0277 0.0018 22 1 -0.3634 0.5153 0.8891 23 1 -0.3634 0.5124 -0.8908 24 1 1.6648 -1.7464 1.2544 25 1 1.6905 -0.2023 2.1390 26 1 5.1268 -1.3036 2.4551 27 1 3.6975 -0.7035 3.3299 28 1 3.6793 -2.3288 2.6042 29 1 5.1121 -1.4961 0.1093 30 1 3.6373 -2.4923 0.0841 31 1 3.9676 0.2434 -1.2298 32 1 3.9395 -1.3232 -2.0759 33 1 2.2019 0.7900 -2.6350 34 1 2.5273 -1.3189 -3.7984 35 1 0.8330 -1.7026 -3.4105 36 1 1.1233 -2.4887 -6.9962 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229603483.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:28 Heat of formation + Delta-G solvation = -32.039956 kcal Electronic energy + Delta-G solvation = -14630.600236 eV Core-core repulsion = 12340.897954 eV Total energy + Delta-G solvation = -2289.702282 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.39311 -37.01891 -34.99548 -33.66172 -32.08463 -28.68590 -27.73190 -26.13863 -24.18485 -22.93058 -22.37835 -20.81925 -18.53634 -16.80506 -16.67040 -16.20893 -15.80674 -15.53603 -15.31722 -15.10052 -14.30805 -13.96583 -13.60343 -13.41413 -13.27277 -13.09365 -12.78138 -12.72181 -12.64846 -12.33934 -12.10797 -12.06208 -11.56781 -11.56019 -11.49056 -10.98739 -10.65651 -9.30855 -8.99320 -8.22214 -6.33423 1.41030 1.42818 1.54686 2.40264 2.98422 3.11022 3.54079 3.78209 3.91903 4.13101 4.16645 4.37518 4.52918 4.53858 4.60449 4.65247 4.71750 4.81277 4.85623 4.91572 5.02901 5.05306 5.11635 5.13694 5.22817 5.36503 5.46013 5.56297 5.63810 6.03750 6.09182 6.16746 6.49000 6.75017 6.91705 7.37804 8.89335 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055007 B = 0.006492 C = 0.006094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.902485 B = 4312.260267 C = 4593.605139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.067 4.067 3 H 0.074 0.926 4 C 0.066 3.934 5 N -0.553 5.553 6 C 0.025 3.975 7 C 0.067 3.933 8 C -0.139 4.139 9 C 0.090 3.910 10 H 0.042 0.958 11 N -0.677 5.677 12 C 0.214 3.786 13 C -0.534 4.534 14 H 0.064 0.936 15 C 0.001 3.999 16 N -0.936 5.936 17 Si 0.974 3.026 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.264 1.264 21 H 0.038 0.962 22 H 0.069 0.931 23 H 0.051 0.949 24 H 0.026 0.974 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.025 0.975 29 H 0.086 0.914 30 H 0.025 0.975 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.333 0.667 34 H -0.040 1.040 35 H -0.007 1.007 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.911 2.569 15.251 15.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.087 4.087 3 H 0.092 0.908 4 C -0.062 4.062 5 N -0.277 5.277 6 C -0.123 4.123 7 C -0.062 4.062 8 C -0.179 4.179 9 C -0.021 4.021 10 H 0.060 0.940 11 N -0.306 5.306 12 C 0.086 3.914 13 C -0.572 4.572 14 H 0.083 0.917 15 C -0.197 4.197 16 N -0.576 5.576 17 Si 0.798 3.202 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.188 1.188 21 H 0.058 0.942 22 H 0.088 0.912 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.112 0.888 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.043 0.957 29 H 0.104 0.896 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.151 0.849 34 H -0.022 1.022 35 H 0.011 0.989 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.392 2.840 15.240 15.869 hybrid contribution 0.440 -1.094 -1.295 1.751 sum 3.832 1.746 13.945 14.567 Atomic orbital electron populations 1.21592 0.94357 1.00989 1.01885 1.21040 0.95960 0.99575 0.92114 0.90780 1.22159 0.86854 0.98712 0.98514 1.61942 1.08465 1.54309 1.03000 1.22418 1.01007 0.97681 0.91146 1.21957 1.00261 0.94266 0.89706 1.22229 0.97126 1.01497 0.97028 1.21670 0.92608 0.96339 0.91475 0.93961 1.60620 1.55699 1.10665 1.03598 1.19148 0.92637 0.91611 0.88018 1.21565 1.45129 0.96526 0.94023 0.91747 1.25962 0.95396 0.95914 1.02462 1.70098 1.50284 1.10921 1.26308 0.85322 0.78537 0.78306 0.78059 1.19655 1.20769 1.18844 0.94245 0.91164 0.93033 0.95555 0.88754 0.90549 0.89997 0.95684 0.89564 0.95699 0.90962 0.93605 0.84925 1.02221 0.98924 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 9.06 71.98 0.65 -3.17 16 2 C -0.07 -2.01 2.58 -10.75 -0.03 -2.03 16 3 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 4 C 0.07 1.63 4.75 86.32 0.41 2.04 16 5 N -0.55 -13.51 4.91 -922.55 -4.53 -18.04 16 6 C 0.03 0.46 9.59 127.69 1.22 1.68 16 7 C 0.07 1.80 5.46 86.33 0.47 2.27 16 8 C -0.14 -4.60 5.35 30.65 0.16 -4.44 16 9 C 0.09 3.29 1.95 44.99 0.09 3.38 16 10 H 0.04 1.74 7.81 -2.38 -0.02 1.72 16 11 N -0.68 -29.77 5.59 -495.17 -2.77 -32.54 16 12 C 0.21 11.73 5.24 85.56 0.45 12.18 16 13 C -0.53 -31.02 9.32 25.60 0.24 -30.79 16 14 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 15 C 0.00 0.04 5.46 84.65 0.46 0.50 16 16 N -0.94 -57.50 13.29 21.45 0.28 -57.21 16 17 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 19 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 20 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 21 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.05 1.77 7.68 -2.39 -0.02 1.75 16 24 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.09 1.93 8.12 -2.39 -0.02 1.91 16 26 H 0.08 1.23 8.10 -2.39 -0.02 1.21 16 27 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.02 0.44 8.14 -2.39 -0.02 0.43 16 29 H 0.09 2.04 8.09 -2.39 -0.02 2.02 16 30 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 2.32 8.10 -2.39 -0.02 2.30 16 32 H 0.05 1.70 7.52 -2.39 -0.02 1.68 16 33 H 0.33 14.11 8.44 -89.69 -0.76 13.35 16 34 H -0.04 -2.35 7.49 -2.38 -0.02 -2.36 16 35 H -0.01 -0.45 8.06 -2.39 -0.02 -0.46 16 36 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -63.85 285.94 -0.59 -64.44 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.27 Total: 14.83 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 4.13 Total: -18.38 kcal Atomic # 7 Polarization: -100.78 SS G_CDS: -7.02 Total: -107.79 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -63.85 -0.59 -64.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229603483.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.401 kcal (2) G-P(sol) polarization free energy of solvation -63.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds