Wall clock time and date at job start Mon Mar 30 2020 03:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47118 * 2 1 4 4 C 1.50700 * 109.47037 * 119.99607 * 2 1 3 5 5 H 1.08000 * 119.99787 * 120.00151 * 4 2 1 6 6 C 1.37876 * 120.00406 * 300.00118 * 4 2 1 7 7 N 1.31524 * 119.99609 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00377 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47012 * 60.00165 * 8 6 4 10 10 H 1.48499 * 109.46929 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47075 * 299.99930 * 8 6 4 12 12 N 1.46894 * 109.47086 * 239.99918 * 2 1 3 13 13 C 1.46906 * 110.99882 * 306.04160 * 12 2 1 14 14 C 1.46898 * 111.00103 * 69.99969 * 12 2 1 15 15 C 1.53003 * 109.47233 * 75.75525 * 14 12 2 16 16 H 1.08995 * 110.45785 * 297.85563 * 15 14 12 17 17 C 1.54374 * 110.41102 * 175.44040 * 15 14 12 18 18 C 1.54259 * 105.06202 * 217.36367 * 17 15 14 19 19 C 1.54384 * 105.05786 * 0.02562 * 18 17 15 20 20 N 1.48557 * 104.59687 * 23.84612 * 19 18 17 21 21 H 1.09001 * 109.47242 * 300.00433 * 1 2 3 22 22 H 1.09002 * 109.47205 * 60.00020 * 1 2 3 23 23 H 1.08997 * 109.47206 * 180.02562 * 1 2 3 24 24 H 0.97001 * 119.99731 * 180.02562 * 7 6 4 25 25 H 1.09001 * 109.46715 * 189.38695 * 13 12 2 26 26 H 1.08998 * 109.47220 * 309.39235 * 13 12 2 27 27 H 1.08998 * 109.46662 * 69.39081 * 13 12 2 28 28 H 1.08992 * 109.47428 * 315.75031 * 14 12 2 29 29 H 1.09008 * 109.46622 * 195.75054 * 14 12 2 30 30 H 1.09004 * 110.32198 * 98.47099 * 17 15 14 31 31 H 1.08995 * 110.32486 * 336.26654 * 17 15 14 32 32 H 1.08998 * 110.32391 * 118.89752 * 18 17 15 33 33 H 1.08995 * 110.32885 * 241.10952 * 18 17 15 34 34 H 1.08991 * 110.41290 * 142.63373 * 19 18 17 35 35 H 1.09006 * 110.40530 * 264.95296 * 19 18 17 36 36 H 1.00900 * 110.99750 * 80.07530 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9426 0.8298 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.8062 -1.1207 4.0083 10 1 1.8258 -0.4203 5.2205 11 1 1.8257 -2.5200 4.0079 12 7 2.0196 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3076 14 6 1.7529 0.0972 -2.4090 15 6 2.7475 1.2570 -2.4906 16 1 2.6264 1.9234 -1.6367 17 6 2.5608 2.0344 -3.8112 18 6 3.9864 2.4293 -4.2487 19 6 4.9145 1.8567 -3.1560 20 7 4.1396 0.7417 -2.5533 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 0.7086 1.1614 3.4844 25 1 1.9344 -2.5866 -2.1041 26 1 1.5624 -2.5649 -0.3635 27 1 0.3718 -1.9514 -1.5358 28 1 0.7375 0.4914 -2.3690 29 1 1.8619 -0.5375 -3.2885 30 1 1.9557 2.9254 -3.6436 31 1 2.0968 1.3967 -4.5635 32 1 4.2221 1.9855 -5.2159 33 1 4.0811 3.5141 -4.2959 34 1 5.8374 1.4826 -3.5988 35 1 5.1343 2.6176 -2.4070 36 1 4.1933 -0.0871 -3.1263 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235106870.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:18 Heat of formation + Delta-G solvation = 6.177196 kcal Electronic energy + Delta-G solvation = -14940.928324 eV Core-core repulsion = 12652.883262 eV Total energy + Delta-G solvation = -2288.045062 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.66202 -36.54547 -32.64536 -30.01422 -29.53498 -28.40394 -25.48694 -25.07815 -23.02577 -21.21279 -20.08186 -18.81501 -16.18362 -15.58308 -15.11759 -14.94992 -14.12976 -14.06034 -13.57943 -13.27894 -12.77800 -12.37768 -11.75517 -11.47610 -11.36928 -11.24638 -10.99258 -10.86487 -10.72868 -10.56952 -10.42355 -10.33745 -10.22207 -9.95772 -9.59575 -8.78226 -8.27405 -8.11182 -6.96693 -5.91034 -3.92904 3.39527 3.43028 3.47025 4.47516 4.57554 4.93914 4.98730 5.20364 5.35736 5.41033 5.58430 5.72256 5.74880 5.91950 5.99745 6.09882 6.14152 6.19540 6.26433 6.35211 6.46442 6.67408 6.74594 6.88871 6.94513 7.19703 7.25287 7.58288 7.78880 7.86663 7.96620 8.28369 8.50471 8.72966 9.12877 9.71105 11.16416 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037350 B = 0.008349 C = 0.007889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.494907 B = 3352.859302 C = 3548.403498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.213 3.787 3 H 0.040 0.960 4 C -0.491 4.491 5 H 0.061 0.939 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.290 1.290 11 H -0.279 1.279 12 N -0.521 5.521 13 C 0.036 3.964 14 C 0.055 3.945 15 C 0.082 3.918 16 H 0.090 0.910 17 C -0.155 4.155 18 C -0.156 4.156 19 C 0.036 3.964 20 N -0.638 5.638 21 H 0.087 0.913 22 H 0.005 0.995 23 H 0.029 0.971 24 H 0.259 0.741 25 H 0.039 0.961 26 H 0.074 0.926 27 H 0.010 0.990 28 H 0.035 0.965 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.636 1.052 -11.565 11.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.106 3.894 3 H 0.058 0.942 4 C -0.530 4.530 5 H 0.079 0.921 6 C -0.144 4.144 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.205 1.205 12 N -0.244 5.244 13 C -0.113 4.113 14 C -0.074 4.074 15 C -0.028 4.028 16 H 0.108 0.892 17 C -0.195 4.195 18 C -0.196 4.196 19 C -0.094 4.094 20 N -0.264 5.264 21 H 0.106 0.894 22 H 0.024 0.976 23 H 0.048 0.952 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.093 0.907 27 H 0.028 0.972 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.273 1.184 -10.627 11.183 hybrid contribution -1.011 -0.230 -0.245 1.065 sum 2.262 0.955 -10.872 11.146 Atomic orbital electron populations 1.22429 1.01320 0.99254 1.00282 1.19278 0.89144 0.94735 0.86202 0.94216 1.21081 1.29952 1.12258 0.89675 0.92077 1.24920 0.95397 0.95213 0.98919 1.69882 1.37415 1.23242 1.23272 0.86601 0.79269 0.79521 0.82222 1.20253 1.21540 1.20507 1.62285 1.58389 1.01809 1.01957 1.22217 0.95464 0.92101 1.01510 1.22153 0.96336 0.94613 0.94280 1.22624 0.88701 0.95581 0.95929 0.89189 1.22996 0.96835 1.00754 0.98887 1.22913 0.95927 1.01192 0.99527 1.23054 0.96444 0.94997 0.94935 1.63228 1.07788 1.04400 1.51011 0.89408 0.97595 0.95199 0.93142 0.94182 0.90701 0.97174 0.94685 0.92896 0.91519 0.92007 0.92243 0.91708 0.91553 0.90642 0.85239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.27 8.25 37.16 0.31 -3.96 16 2 C 0.21 5.42 2.22 -68.87 -0.15 5.27 16 3 H 0.04 1.12 6.70 -51.93 -0.35 0.77 16 4 C -0.49 -13.75 7.83 -34.44 -0.27 -14.01 16 5 H 0.06 1.73 7.17 -52.49 -0.38 1.35 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 7 N -0.90 -26.06 11.32 55.43 0.63 -25.43 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.52 -11.31 4.51 -236.29 -1.06 -12.38 16 13 C 0.04 0.71 8.49 60.07 0.51 1.22 16 14 C 0.06 1.01 4.28 -3.82 -0.02 0.99 16 15 C 0.08 1.40 3.23 -66.06 -0.21 1.19 16 16 H 0.09 1.81 6.92 -51.93 -0.36 1.45 16 17 C -0.15 -2.09 6.55 -25.35 -0.17 -2.26 16 18 C -0.16 -1.86 7.00 -25.35 -0.18 -2.04 16 19 C 0.04 0.49 7.47 -2.18 -0.02 0.47 16 20 N -0.64 -10.63 7.29 -102.74 -0.75 -11.38 16 21 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 22 H 0.01 0.12 6.45 -51.93 -0.34 -0.22 16 23 H 0.03 0.71 6.54 -51.93 -0.34 0.37 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.62 6.66 -51.93 -0.35 1.27 16 27 H 0.01 0.19 6.79 -51.93 -0.35 -0.16 16 28 H 0.04 0.66 6.17 -51.93 -0.32 0.34 16 29 H 0.05 0.86 7.89 -51.92 -0.41 0.45 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.78 7.82 -51.93 -0.41 0.37 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.33 5.16 8.64 -39.29 -0.34 4.82 16 LS Contribution 275.58 15.07 4.15 4.15 Total: -1.00 -28.87 275.58 -8.26 -37.14 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.92 Total: 2.69 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -0.29 Total: -11.66 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -1.19 Total: -49.18 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.87 -8.26 -37.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235106870.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.316 kcal (2) G-P(sol) polarization free energy of solvation -28.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds