Wall clock time and date at job start Mon Mar 30 2020 03:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47118 * 2 1 4 4 C 1.50700 * 109.47037 * 119.99607 * 2 1 3 5 5 H 1.08000 * 119.99787 * 120.00151 * 4 2 1 6 6 C 1.37876 * 120.00406 * 300.00118 * 4 2 1 7 7 N 1.31524 * 119.99609 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00377 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47012 * 60.00165 * 8 6 4 10 10 H 1.48499 * 109.46929 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47075 * 299.99930 * 8 6 4 12 12 N 1.46894 * 109.47086 * 239.99918 * 2 1 3 13 13 C 1.46906 * 110.99882 * 306.04160 * 12 2 1 14 14 C 1.46898 * 111.00103 * 69.99969 * 12 2 1 15 15 C 1.53003 * 109.47233 * 75.75525 * 14 12 2 16 16 H 1.08995 * 110.45785 * 297.85563 * 15 14 12 17 17 C 1.54374 * 110.41102 * 175.44040 * 15 14 12 18 18 C 1.54259 * 105.06202 * 217.36367 * 17 15 14 19 19 C 1.54384 * 105.05786 * 0.02562 * 18 17 15 20 20 N 1.48557 * 104.59687 * 23.84612 * 19 18 17 21 21 H 1.09001 * 109.47242 * 300.00433 * 1 2 3 22 22 H 1.09002 * 109.47205 * 60.00020 * 1 2 3 23 23 H 1.08997 * 109.47206 * 180.02562 * 1 2 3 24 24 H 0.97001 * 119.99731 * 180.02562 * 7 6 4 25 25 H 1.09001 * 109.46715 * 189.38695 * 13 12 2 26 26 H 1.08998 * 109.47220 * 309.39235 * 13 12 2 27 27 H 1.08998 * 109.46662 * 69.39081 * 13 12 2 28 28 H 1.08992 * 109.47428 * 315.75031 * 14 12 2 29 29 H 1.09008 * 109.46622 * 195.75054 * 14 12 2 30 30 H 1.09004 * 110.32198 * 98.47099 * 17 15 14 31 31 H 1.08995 * 110.32486 * 336.26654 * 17 15 14 32 32 H 1.08998 * 110.32391 * 118.89752 * 18 17 15 33 33 H 1.08995 * 110.32885 * 241.10952 * 18 17 15 34 34 H 1.08991 * 110.41290 * 142.63373 * 19 18 17 35 35 H 1.09006 * 110.40530 * 264.95296 * 19 18 17 36 36 H 1.00900 * 110.99750 * 80.07530 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9426 0.8298 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.8062 -1.1207 4.0083 10 1 1.8258 -0.4203 5.2205 11 1 1.8257 -2.5200 4.0079 12 7 2.0196 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3076 14 6 1.7529 0.0972 -2.4090 15 6 2.7475 1.2570 -2.4906 16 1 2.6264 1.9234 -1.6367 17 6 2.5608 2.0344 -3.8112 18 6 3.9864 2.4293 -4.2487 19 6 4.9145 1.8567 -3.1560 20 7 4.1396 0.7417 -2.5533 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 0.7086 1.1614 3.4844 25 1 1.9344 -2.5866 -2.1041 26 1 1.5624 -2.5649 -0.3635 27 1 0.3718 -1.9514 -1.5358 28 1 0.7375 0.4914 -2.3690 29 1 1.8619 -0.5375 -3.2885 30 1 1.9557 2.9254 -3.6436 31 1 2.0968 1.3967 -4.5635 32 1 4.2221 1.9855 -5.2159 33 1 4.0811 3.5141 -4.2959 34 1 5.8374 1.4826 -3.5988 35 1 5.1343 2.6176 -2.4070 36 1 4.1933 -0.0871 -3.1263 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235106870.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:18 Heat of formation + Delta-G solvation = -14.584698 kcal Electronic energy + Delta-G solvation = -14941.828628 eV Core-core repulsion = 12652.883262 eV Total energy + Delta-G solvation = -2288.945366 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.00886 -38.16838 -34.68643 -31.52189 -30.68000 -30.20415 -27.33472 -26.79354 -24.71301 -22.52327 -21.28722 -20.55460 -18.23327 -17.05808 -16.78511 -16.28580 -15.93356 -15.46074 -14.96397 -14.63749 -14.46513 -14.15277 -13.51275 -13.15620 -12.80340 -12.67485 -12.60728 -12.53014 -12.38703 -12.23521 -12.07350 -11.95333 -11.71127 -11.50123 -11.29790 -10.84467 -10.42897 -9.34086 -8.68907 -8.06420 -6.15689 1.43174 1.45544 1.52802 2.46029 3.22454 3.26909 3.65777 3.92847 3.93825 4.14341 4.31973 4.51852 4.59675 4.62913 4.69136 4.72814 4.81800 4.85927 4.96309 4.99370 5.08001 5.11346 5.17134 5.22771 5.24113 5.39749 5.58013 5.75440 5.83206 6.03340 6.30395 6.58542 6.69884 6.85529 6.98481 7.52831 8.99691 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037350 B = 0.008349 C = 0.007889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.494907 B = 3352.859302 C = 3548.403498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.221 3.779 3 H 0.003 0.997 4 C -0.508 4.508 5 H 0.053 0.947 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.957 3.043 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.532 5.532 13 C 0.039 3.961 14 C 0.058 3.942 15 C 0.083 3.917 16 H 0.047 0.953 17 C -0.147 4.147 18 C -0.146 4.146 19 C 0.034 3.966 20 N -0.663 5.663 21 H 0.059 0.941 22 H 0.023 0.977 23 H 0.032 0.968 24 H 0.259 0.741 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.015 0.985 28 H 0.028 0.972 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.157 0.354 -13.098 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.114 3.886 3 H 0.021 0.979 4 C -0.547 4.547 5 H 0.071 0.929 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.783 3.217 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.255 5.255 13 C -0.110 4.110 14 C -0.070 4.070 15 C -0.028 4.028 16 H 0.065 0.935 17 C -0.187 4.187 18 C -0.185 4.185 19 C -0.095 4.095 20 N -0.291 5.291 21 H 0.078 0.922 22 H 0.042 0.958 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.033 0.967 28 H 0.046 0.954 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.798 0.480 -12.181 12.768 hybrid contribution -1.147 -0.007 0.196 1.164 sum 2.651 0.473 -11.986 12.284 Atomic orbital electron populations 1.22224 1.00807 0.99115 0.99744 1.18955 0.89324 0.92893 0.87424 0.97891 1.21368 1.29996 1.12207 0.91100 0.92852 1.25688 0.95591 0.95914 1.01799 1.70017 1.38227 1.24350 1.23829 0.85624 0.78606 0.78737 0.78715 1.20084 1.21036 1.19576 1.62173 1.58649 1.02670 1.02013 1.22212 0.96114 0.91149 1.01487 1.22226 0.96229 0.95008 0.93576 1.22433 0.89112 0.94880 0.96379 0.93501 1.22927 0.98223 1.00513 0.97068 1.22851 0.94041 1.01972 0.99652 1.23084 0.97367 0.93943 0.95138 1.63129 1.07735 1.05775 1.52460 0.92234 0.95773 0.94920 0.93165 0.90993 0.92921 0.96680 0.95422 0.89997 0.91474 0.90333 0.90061 0.90629 0.89436 0.92153 0.84428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.95 8.25 71.98 0.59 -7.36 16 2 C 0.22 11.53 2.22 44.17 0.10 11.63 16 3 H 0.00 0.19 6.70 -2.38 -0.02 0.17 16 4 C -0.51 -28.96 7.83 25.60 0.20 -28.76 16 5 H 0.05 3.06 7.17 -2.91 -0.02 3.03 16 6 C 0.01 0.45 5.30 84.65 0.45 0.89 16 7 N -0.92 -54.74 11.32 21.45 0.24 -54.49 16 8 Si 0.96 45.22 29.54 68.60 2.03 47.24 16 9 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 N -0.53 -22.91 4.51 -901.47 -4.06 -26.97 16 13 C 0.04 1.49 8.49 127.69 1.08 2.57 16 14 C 0.06 2.05 4.28 86.30 0.37 2.42 16 15 C 0.08 2.80 3.23 45.06 0.15 2.94 16 16 H 0.05 1.98 6.92 -2.39 -0.02 1.96 16 17 C -0.15 -3.68 6.55 31.49 0.21 -3.47 16 18 C -0.15 -3.07 7.00 31.49 0.22 -2.85 16 19 C 0.03 0.88 7.47 86.45 0.65 1.52 16 20 N -0.66 -21.49 7.29 -478.96 -3.49 -24.98 16 21 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 22 H 0.02 1.07 6.45 -2.39 -0.02 1.05 16 23 H 0.03 1.56 6.54 -2.39 -0.02 1.54 16 24 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 25 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.05 2.24 6.66 -2.39 -0.02 2.23 16 27 H 0.01 0.55 6.79 -2.39 -0.02 0.54 16 28 H 0.03 1.02 6.17 -2.39 -0.01 1.00 16 29 H 0.08 2.41 7.89 -2.38 -0.02 2.39 16 30 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.08 1.72 7.82 -2.39 -0.02 1.70 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.34 9.90 8.64 -89.69 -0.78 9.12 16 Total: -1.00 -62.71 275.58 -1.00 -63.71 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.28 Total: 15.95 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: 4.01 Total: -20.45 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -7.31 Total: -106.45 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -62.71 -1.00 -63.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235106870.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.120 kcal (2) G-P(sol) polarization free energy of solvation -62.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds