Wall clock time and date at job start Mon Mar 30 2020 02:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.52578 * 2 1 4 4 C 1.53120 * 109.57092 * 239.84655 * 2 1 3 5 5 C 1.53038 * 109.27690 * 297.71545 * 4 2 1 6 6 N 1.46841 * 109.52368 * 300.82122 * 5 4 2 7 7 C 1.46905 * 110.99973 * 185.84313 * 6 5 4 8 8 C 1.50696 * 109.47333 * 48.55000 * 7 6 5 9 9 H 1.08007 * 120.00056 * 5.33071 * 8 7 6 10 10 C 1.37876 * 120.00313 * 185.33250 * 8 7 6 11 11 N 1.31515 * 119.99702 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00315 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47236 * 89.99954 * 12 10 8 14 14 H 1.48501 * 109.47266 * 210.00086 * 12 10 8 15 15 H 1.48499 * 109.47040 * 329.99856 * 12 10 8 16 16 C 1.46838 * 111.19829 * 61.74135 * 6 5 4 17 17 H 1.09006 * 109.46432 * 58.27255 * 16 6 5 18 18 C 1.53002 * 109.46461 * 178.25050 * 16 6 5 19 19 N 1.46898 * 109.47068 * 293.99574 * 18 16 6 20 20 C 1.53033 * 109.52883 * 298.25653 * 16 6 5 21 21 H 1.09002 * 109.46634 * 299.87130 * 1 2 3 22 22 H 1.08996 * 109.47456 * 59.86422 * 1 2 3 23 23 H 1.08994 * 109.47097 * 179.87075 * 1 2 3 24 24 H 1.09002 * 109.50623 * 57.66054 * 4 2 1 25 25 H 1.09004 * 109.50208 * 177.77343 * 4 2 1 26 26 H 1.09005 * 109.45768 * 180.80392 * 5 4 2 27 27 H 1.08996 * 109.46344 * 60.84286 * 5 4 2 28 28 H 1.08994 * 109.47165 * 168.55159 * 7 6 5 29 29 H 1.09004 * 109.46594 * 288.54924 * 7 6 5 30 30 H 0.97002 * 120.00280 * 180.02562 * 11 10 8 31 31 H 1.09005 * 109.46938 * 53.99384 * 18 16 6 32 32 H 1.08996 * 109.47433 * 173.99453 * 18 16 6 33 33 H 1.00903 * 111.00194 * 179.97438 * 19 18 16 34 34 H 1.00901 * 111.00551 * 303.95068 * 19 18 16 35 35 H 1.08997 * 109.51003 * 179.11883 * 20 16 6 36 36 H 1.09003 * 109.50334 * 299.24405 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0429 -0.7247 -1.2475 5 6 1.5791 -2.1827 -1.2114 6 7 2.0950 -2.8318 0.0006 7 6 1.7862 -4.2681 0.0006 8 6 2.1712 -4.8647 -1.3286 9 1 2.6804 -4.2602 -2.0647 10 6 1.8734 -6.1822 -1.6052 11 7 1.2538 -6.9184 -0.7087 12 14 2.3513 -6.9219 -3.2525 13 1 3.7119 -7.5089 -3.1555 14 1 1.3794 -7.9832 -3.6192 15 1 2.3424 -5.8619 -4.2924 16 6 1.5780 -2.1824 1.2118 17 1 0.4885 -2.2168 1.2057 18 6 2.1043 -2.9153 2.4475 19 7 1.5418 -4.2717 2.4887 20 6 2.0418 -0.7244 1.2481 21 1 -0.3633 0.5119 0.8912 22 1 -0.3634 0.5159 -0.8887 23 1 -0.3633 -1.0276 -0.0023 24 1 1.6469 -0.2388 -2.1393 25 1 3.1322 -0.6897 -1.2667 26 1 1.9547 -2.7051 -2.0912 27 1 0.4897 -2.2172 -1.2063 28 1 2.3463 -4.7601 0.7956 29 1 0.7183 -4.4100 0.1670 30 1 1.0445 -7.8454 -0.9030 31 1 3.1916 -2.9742 2.3993 32 1 1.8092 -2.3722 3.3452 33 1 1.8748 -4.7769 3.2962 34 1 0.5333 -4.2458 2.4687 35 1 1.6450 -0.2383 2.1394 36 1 3.1310 -0.6894 1.2682 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235277863.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:29 Heat of formation + Delta-G solvation = 4.716962 kcal Electronic energy + Delta-G solvation = -15262.025415 eV Core-core repulsion = 12973.917032 eV Total energy + Delta-G solvation = -2288.108383 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.01387 -34.79887 -33.38934 -31.77486 -29.96175 -27.85955 -25.93710 -24.31450 -23.10800 -21.11097 -20.20723 -18.04722 -16.09670 -15.64862 -14.79427 -14.52962 -14.33355 -14.09652 -13.68025 -13.37969 -12.76989 -12.63994 -11.90434 -11.78778 -11.49274 -11.27834 -11.02597 -10.85024 -10.67969 -10.57688 -10.41945 -10.05583 -9.93614 -9.67676 -9.41545 -8.88225 -8.29231 -7.42529 -6.83642 -5.80213 -3.79157 3.41141 3.46933 3.50065 4.57584 4.96554 5.03689 5.17801 5.30555 5.43385 5.53771 5.68965 5.84233 5.87789 5.92411 5.96229 6.07676 6.07888 6.17427 6.29632 6.34375 6.46628 6.58034 6.64448 6.71761 6.95625 7.05006 7.72481 7.84225 7.92033 8.01549 8.04013 8.50278 8.66604 8.92438 9.32858 9.81647 11.29095 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033010 B = 0.010310 C = 0.008467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.016955 B = 2715.164694 C = 3306.164749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 H 0.059 0.941 4 C -0.114 4.114 5 C 0.060 3.940 6 N -0.529 5.529 7 C 0.192 3.808 8 C -0.514 4.514 9 H 0.057 0.943 10 C 0.056 3.944 11 N -0.891 5.891 12 Si 0.886 3.114 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.277 1.277 16 C 0.086 3.914 17 H 0.027 0.973 18 C 0.072 3.928 19 N -0.822 5.822 20 C -0.104 4.104 21 H 0.046 0.954 22 H 0.049 0.951 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.017 0.983 28 H 0.082 0.918 29 H -0.014 1.014 30 H 0.255 0.745 31 H 0.075 0.925 32 H 0.013 0.987 33 H 0.328 0.672 34 H 0.335 0.665 35 H 0.052 0.948 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 11.250 4.650 12.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 H 0.078 0.922 4 C -0.152 4.152 5 C -0.068 4.068 6 N -0.254 5.254 7 C 0.067 3.933 8 C -0.553 4.553 9 H 0.075 0.925 10 C -0.144 4.144 11 N -0.531 5.531 12 Si 0.715 3.285 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.024 4.024 17 H 0.045 0.955 18 C -0.059 4.059 19 N -0.351 5.351 20 C -0.143 4.143 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.035 0.965 28 H 0.100 0.900 29 H 0.004 0.996 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.031 0.969 33 H 0.141 0.859 34 H 0.147 0.853 35 H 0.071 0.929 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.107 10.997 3.999 11.702 hybrid contribution -1.181 -0.294 -0.058 1.219 sum -1.074 10.703 3.941 11.456 Atomic orbital electron populations 1.21926 0.95984 1.02183 1.00580 1.21104 0.95331 0.98369 0.96068 0.92208 1.21697 1.00928 0.96590 0.95995 1.22025 0.96274 0.92401 0.96128 1.62172 1.58170 1.06449 0.98641 1.20173 0.95364 0.80180 0.97561 1.21519 1.36710 0.95851 1.01264 0.92498 1.24915 0.95761 0.97264 0.96492 1.70000 1.41745 1.07539 1.33845 0.86703 0.78126 0.78878 0.84841 1.20889 1.21584 1.20182 1.21552 0.95946 0.92600 0.92286 0.95536 1.21786 1.00527 0.88817 0.94775 1.59269 1.12990 1.15626 1.47227 1.21594 1.01128 0.95024 0.96514 0.93500 0.93223 0.92023 0.92863 0.91763 0.89573 0.96453 0.90018 0.99625 0.93514 0.90670 0.96867 0.85939 0.85262 0.92927 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.62 37.16 0.32 -1.76 16 2 C -0.09 -1.31 3.21 -90.50 -0.29 -1.60 16 3 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.11 -1.88 5.60 -26.65 -0.15 -2.03 16 5 C 0.06 1.24 4.87 -3.84 -0.02 1.22 16 6 N -0.53 -11.62 4.62 -228.13 -1.05 -12.68 16 7 C 0.19 5.05 3.49 -4.98 -0.02 5.03 16 8 C -0.51 -14.81 8.29 -34.44 -0.29 -15.10 16 9 H 0.06 1.63 6.11 -52.48 -0.32 1.31 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 12 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 13 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 C 0.09 1.56 1.93 -67.73 -0.13 1.43 16 17 H 0.03 0.51 6.52 -51.93 -0.34 0.18 16 18 C 0.07 1.22 6.07 -3.82 -0.02 1.19 16 19 N -0.82 -14.93 5.86 -10.37 -0.06 -14.99 16 20 C -0.10 -1.58 4.88 -26.65 -0.13 -1.71 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.99 4.93 -51.93 -0.26 0.73 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.09 1.98 5.71 -51.93 -0.30 1.68 16 27 H 0.02 0.37 6.51 -51.93 -0.34 0.03 16 28 H 0.08 2.28 5.72 -51.93 -0.30 1.98 16 29 H -0.01 -0.41 7.81 -51.93 -0.41 -0.81 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.33 5.17 9.08 -39.29 -0.36 4.81 16 34 H 0.33 5.94 8.86 -39.29 -0.35 5.59 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 269.86 15.07 4.07 4.07 Total: -1.00 -30.40 269.86 -8.05 -38.45 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -5.90 Total: 5.94 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -0.82 Total: -11.78 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.38 Total: -53.89 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.40 -8.05 -38.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235277863.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.163 kcal (2) G-P(sol) polarization free energy of solvation -30.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds