Wall clock time and date at job start Mon Mar 30 2020 02:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.52578 * 2 1 4 4 C 1.53120 * 109.57092 * 239.84655 * 2 1 3 5 5 C 1.53038 * 109.27690 * 297.71545 * 4 2 1 6 6 N 1.46841 * 109.52368 * 300.82122 * 5 4 2 7 7 C 1.46905 * 110.99973 * 185.84313 * 6 5 4 8 8 C 1.50696 * 109.47333 * 48.55000 * 7 6 5 9 9 H 1.08007 * 120.00056 * 5.33071 * 8 7 6 10 10 C 1.37876 * 120.00313 * 185.33250 * 8 7 6 11 11 N 1.31515 * 119.99702 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00315 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47236 * 89.99954 * 12 10 8 14 14 H 1.48501 * 109.47266 * 210.00086 * 12 10 8 15 15 H 1.48499 * 109.47040 * 329.99856 * 12 10 8 16 16 C 1.46838 * 111.19829 * 61.74135 * 6 5 4 17 17 H 1.09006 * 109.46432 * 58.27255 * 16 6 5 18 18 C 1.53002 * 109.46461 * 178.25050 * 16 6 5 19 19 N 1.46898 * 109.47068 * 293.99574 * 18 16 6 20 20 C 1.53033 * 109.52883 * 298.25653 * 16 6 5 21 21 H 1.09002 * 109.46634 * 299.87130 * 1 2 3 22 22 H 1.08996 * 109.47456 * 59.86422 * 1 2 3 23 23 H 1.08994 * 109.47097 * 179.87075 * 1 2 3 24 24 H 1.09002 * 109.50623 * 57.66054 * 4 2 1 25 25 H 1.09004 * 109.50208 * 177.77343 * 4 2 1 26 26 H 1.09005 * 109.45768 * 180.80392 * 5 4 2 27 27 H 1.08996 * 109.46344 * 60.84286 * 5 4 2 28 28 H 1.08994 * 109.47165 * 168.55159 * 7 6 5 29 29 H 1.09004 * 109.46594 * 288.54924 * 7 6 5 30 30 H 0.97002 * 120.00280 * 180.02562 * 11 10 8 31 31 H 1.09005 * 109.46938 * 53.99384 * 18 16 6 32 32 H 1.08996 * 109.47433 * 173.99453 * 18 16 6 33 33 H 1.00903 * 111.00194 * 179.97438 * 19 18 16 34 34 H 1.00901 * 111.00551 * 303.95068 * 19 18 16 35 35 H 1.08997 * 109.51003 * 179.11883 * 20 16 6 36 36 H 1.09003 * 109.50334 * 299.24405 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0429 -0.7247 -1.2475 5 6 1.5791 -2.1827 -1.2114 6 7 2.0950 -2.8318 0.0006 7 6 1.7862 -4.2681 0.0006 8 6 2.1712 -4.8647 -1.3286 9 1 2.6804 -4.2602 -2.0647 10 6 1.8734 -6.1822 -1.6052 11 7 1.2538 -6.9184 -0.7087 12 14 2.3513 -6.9219 -3.2525 13 1 3.7119 -7.5089 -3.1555 14 1 1.3794 -7.9832 -3.6192 15 1 2.3424 -5.8619 -4.2924 16 6 1.5780 -2.1824 1.2118 17 1 0.4885 -2.2168 1.2057 18 6 2.1043 -2.9153 2.4475 19 7 1.5418 -4.2717 2.4887 20 6 2.0418 -0.7244 1.2481 21 1 -0.3633 0.5119 0.8912 22 1 -0.3634 0.5159 -0.8887 23 1 -0.3633 -1.0276 -0.0023 24 1 1.6469 -0.2388 -2.1393 25 1 3.1322 -0.6897 -1.2667 26 1 1.9547 -2.7051 -2.0912 27 1 0.4897 -2.2172 -1.2063 28 1 2.3463 -4.7601 0.7956 29 1 0.7183 -4.4100 0.1670 30 1 1.0445 -7.8454 -0.9030 31 1 3.1916 -2.9742 2.3993 32 1 1.8092 -2.3722 3.3452 33 1 1.8748 -4.7769 3.2962 34 1 0.5333 -4.2458 2.4687 35 1 1.6450 -0.2383 2.1394 36 1 3.1310 -0.6894 1.2682 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235277863.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:29 Heat of formation + Delta-G solvation = -17.329870 kcal Electronic energy + Delta-G solvation = -15262.981438 eV Core-core repulsion = 12973.917032 eV Total energy + Delta-G solvation = -2289.064405 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.48808 -36.23294 -35.21988 -33.70263 -31.38723 -29.49257 -27.64508 -25.80233 -24.73952 -22.86932 -21.75714 -19.39194 -18.26030 -17.18310 -16.50867 -16.18591 -15.82859 -15.47131 -15.23783 -14.79453 -14.30677 -14.19285 -13.81008 -13.28801 -13.11151 -12.78596 -12.65632 -12.46472 -12.37704 -12.24383 -11.91597 -11.72623 -11.43539 -11.38475 -10.96877 -10.68167 -10.48403 -8.98625 -8.64588 -8.03478 -6.10400 1.40525 1.41872 1.51678 2.46708 3.26514 3.45592 3.70749 3.93464 4.06037 4.16681 4.33085 4.46189 4.58264 4.63754 4.65369 4.73255 4.84011 4.89139 5.02233 5.12417 5.15397 5.23571 5.35930 5.37318 5.46391 5.56770 5.67329 5.81903 6.00200 6.30653 6.42392 6.65131 6.71792 7.01331 7.14078 7.55557 9.04910 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033010 B = 0.010310 C = 0.008467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.016955 B = 2715.164694 C = 3306.164749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 H 0.092 0.908 4 C -0.107 4.107 5 C 0.061 3.939 6 N -0.535 5.535 7 C 0.214 3.786 8 C -0.534 4.534 9 H 0.053 0.947 10 C 0.004 3.996 11 N -0.923 5.923 12 Si 0.954 3.046 13 H -0.276 1.276 14 H -0.284 1.284 15 H -0.270 1.270 16 C 0.082 3.918 17 H 0.015 0.985 18 C 0.075 3.925 19 N -0.846 5.846 20 C -0.098 4.098 21 H 0.066 0.934 22 H 0.060 0.940 23 H 0.030 0.970 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.003 0.997 28 H 0.066 0.934 29 H -0.050 1.050 30 H 0.257 0.743 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.340 0.660 34 H 0.334 0.666 35 H 0.082 0.918 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.240 13.132 4.662 13.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 H 0.110 0.890 4 C -0.144 4.144 5 C -0.067 4.067 6 N -0.261 5.261 7 C 0.088 3.912 8 C -0.573 4.573 9 H 0.071 0.929 10 C -0.194 4.194 11 N -0.563 5.563 12 Si 0.779 3.221 13 H -0.201 1.201 14 H -0.210 1.210 15 H -0.194 1.194 16 C -0.027 4.027 17 H 0.033 0.967 18 C -0.056 4.056 19 N -0.377 5.377 20 C -0.137 4.137 21 H 0.085 0.915 22 H 0.079 0.921 23 H 0.049 0.951 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.021 0.979 28 H 0.084 0.916 29 H -0.033 1.033 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.154 0.846 34 H 0.147 0.853 35 H 0.100 0.900 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.587 12.904 4.019 13.528 hybrid contribution -1.351 -0.865 -0.030 1.605 sum -0.764 12.039 3.990 12.705 Atomic orbital electron populations 1.21884 0.95578 1.00649 1.02208 1.21145 0.95622 0.99520 0.94345 0.89004 1.21637 1.00906 0.93594 0.98300 1.21977 0.95267 0.95014 0.94431 1.62108 1.58647 1.04556 1.00765 1.19752 0.92502 0.83042 0.95907 1.21896 1.36698 0.96354 1.02342 0.92899 1.25747 0.95710 0.97737 1.00234 1.70132 1.42611 1.07805 1.35779 0.85631 0.77970 0.78055 0.80397 1.20135 1.21011 1.19439 1.21738 0.95318 0.94746 0.90934 0.96723 1.21786 0.99755 0.88469 0.95544 1.59155 1.13112 1.17010 1.48406 1.21591 1.01269 0.92571 0.98232 0.91452 0.92102 0.95061 0.91026 0.91827 0.92703 0.97919 0.91616 1.03251 0.93420 0.91583 0.93402 0.84626 0.85343 0.89993 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 8.62 71.98 0.62 -3.07 16 2 C -0.09 -2.27 3.21 -10.71 -0.03 -2.31 16 3 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 4 C -0.11 -3.33 5.60 30.65 0.17 -3.16 16 5 C 0.06 2.58 4.87 86.33 0.42 3.00 16 6 N -0.54 -23.91 4.62 -875.67 -4.04 -27.95 16 7 C 0.21 11.68 3.49 85.55 0.30 11.98 16 8 C -0.53 -31.62 8.29 25.60 0.21 -31.41 16 9 H 0.05 3.11 6.11 -2.91 -0.02 3.09 16 10 C 0.00 0.21 5.46 84.65 0.46 0.67 16 11 N -0.92 -57.06 13.29 21.45 0.28 -56.78 16 12 Si 0.95 46.23 29.54 68.60 2.03 48.26 16 13 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 14 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 15 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 16 C 0.08 2.92 1.93 44.94 0.09 3.01 16 17 H 0.01 0.57 6.52 -2.38 -0.02 0.56 16 18 C 0.08 2.47 6.07 86.30 0.52 3.00 16 19 N -0.85 -31.28 5.86 -186.72 -1.09 -32.37 16 20 C -0.10 -2.69 4.88 30.65 0.15 -2.54 16 21 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.03 0.97 4.93 -2.39 -0.01 0.96 16 24 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 26 H 0.05 2.60 5.71 -2.38 -0.01 2.59 16 27 H 0.00 0.12 6.51 -2.39 -0.02 0.10 16 28 H 0.07 3.80 5.72 -2.39 -0.01 3.78 16 29 H -0.05 -3.06 7.81 -2.39 -0.02 -3.08 16 30 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.34 10.81 9.08 -89.69 -0.81 10.00 16 34 H 0.33 12.24 8.86 -89.69 -0.79 11.44 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -66.73 269.86 -0.45 -67.18 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -0.54 Total: 22.48 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 2.91 Total: -20.83 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -4.85 Total: -117.10 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -66.73 -0.45 -67.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235277863.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.854 kcal (2) G-P(sol) polarization free energy of solvation -66.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds