Wall clock time and date at job start Mon Mar 30 2020 02:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08990 * 110.78389 * 2 1 4 4 C 1.54942 * 110.72142 * 236.75036 * 2 1 3 5 5 N 1.48536 * 103.22418 * 204.22701 * 4 2 1 6 6 C 1.46901 * 110.99521 * 159.72350 * 5 4 2 7 7 C 1.53002 * 109.47046 * 170.00175 * 6 5 4 8 8 C 1.52998 * 109.47137 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.46992 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99899 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00281 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99858 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00188 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47141 * 90.00412 * 13 11 9 15 15 H 1.48502 * 109.47373 * 209.99963 * 13 11 9 16 16 H 1.48495 * 109.47633 * 329.99986 * 13 11 9 17 17 C 1.47900 * 105.82189 * 39.21141 * 5 4 2 18 18 C 1.53998 * 107.05419 * 334.66788 * 17 5 4 19 19 H 1.09002 * 110.30566 * 242.20650 * 18 17 5 20 20 N 1.46905 * 110.30855 * 120.14309 * 18 17 5 21 21 H 1.09010 * 109.47264 * 181.79460 * 1 2 3 22 22 H 1.09005 * 109.47395 * 301.79117 * 1 2 3 23 23 H 1.08995 * 109.47420 * 61.79501 * 1 2 3 24 24 H 1.09004 * 110.66299 * 85.79479 * 4 2 1 25 25 H 1.09000 * 110.66998 * 322.66146 * 4 2 1 26 26 H 1.08996 * 109.47126 * 289.99999 * 6 5 4 27 27 H 1.08996 * 109.47465 * 50.00271 * 6 5 4 28 28 H 1.09006 * 109.46925 * 299.99840 * 7 6 5 29 29 H 1.09000 * 109.47378 * 59.99823 * 7 6 5 30 30 H 1.08996 * 109.47056 * 299.99837 * 8 7 6 31 31 H 1.08996 * 109.47444 * 60.00053 * 8 7 6 32 32 H 0.96995 * 120.00463 * 179.97438 * 12 11 9 33 33 H 1.08998 * 109.91806 * 94.01913 * 17 5 4 34 34 H 1.08995 * 109.91698 * 215.31773 * 17 5 4 35 35 H 1.00902 * 110.99555 * 61.45018 * 20 18 17 36 36 H 1.00896 * 110.99770 * 185.39978 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0782 -0.7946 -1.2119 5 7 3.4317 -1.2092 -0.7622 6 6 3.9210 -2.3498 -1.5482 7 6 5.3991 -2.5894 -1.2335 8 6 5.9089 -3.7769 -2.0525 9 6 7.3648 -4.0125 -1.7430 10 1 7.8755 -3.3783 -1.0334 11 6 8.0449 -5.0376 -2.3656 12 7 7.4232 -5.8094 -3.2301 13 14 9.8497 -5.3291 -1.9825 14 1 9.9675 -6.2754 -0.8442 15 1 10.5225 -5.9035 -3.1752 16 1 10.4941 -4.0403 -1.6235 17 6 3.2893 -1.5710 0.6648 18 6 2.0770 -0.7928 1.2091 19 1 2.3893 -0.1113 2.0004 20 7 1.0577 -1.7236 1.7119 21 1 -0.3634 -1.0272 0.0322 22 1 -0.3634 0.5414 0.8735 23 1 -0.3634 0.4857 -0.9056 24 1 2.1443 -0.1557 -2.0926 25 1 1.4559 -1.6665 -1.4137 26 1 3.3463 -3.2401 -1.2931 27 1 3.8060 -2.1351 -2.6105 28 1 5.9738 -1.6990 -1.4886 29 1 5.5142 -2.8041 -0.1710 30 1 5.3342 -4.6674 -1.7978 31 1 5.7939 -3.5618 -3.1148 32 1 7.9016 -6.5304 -3.6684 33 1 3.1160 -2.6428 0.7606 34 1 4.1886 -1.2871 1.2113 35 1 1.4193 -2.2794 2.4724 36 1 0.2229 -1.2298 1.9901 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235361170.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:09 Heat of formation + Delta-G solvation = -12.423921 kcal Electronic energy + Delta-G solvation = -14228.048482 eV Core-core repulsion = 11939.196815 eV Total energy + Delta-G solvation = -2288.851667 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.29670 -35.18965 -33.27120 -31.86246 -30.89499 -27.88519 -26.59805 -24.90675 -22.64582 -20.89702 -20.16949 -19.06042 -16.64430 -16.25198 -15.66732 -15.15368 -14.42234 -14.34392 -13.93063 -13.54675 -12.76103 -12.66067 -12.31791 -12.14359 -11.83740 -11.46348 -11.12380 -11.03347 -10.89936 -10.71469 -10.66001 -10.47878 -10.38170 -9.56817 -9.25354 -8.99307 -8.79335 -8.29101 -8.07611 -5.94371 -3.96170 3.35603 3.41476 3.45574 4.19126 4.49192 4.51404 4.60144 4.73570 5.01599 5.32942 5.41303 5.47268 5.53901 5.64070 5.76106 5.81468 5.86636 5.97377 5.98734 6.11393 6.17905 6.30466 6.41680 6.74936 6.85708 7.02308 7.17065 7.27599 7.31774 7.48272 7.75111 7.90903 8.06729 8.50384 9.11111 9.67450 11.17198 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.067083 B = 0.005170 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.292342 B = 5414.201253 C = 5551.155041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.079 0.921 4 C 0.043 3.957 5 N -0.517 5.517 6 C 0.048 3.952 7 C -0.102 4.102 8 C 0.021 3.979 9 C -0.517 4.517 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.892 3.108 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.043 3.957 18 C 0.080 3.920 19 H 0.041 0.959 20 N -0.843 5.843 21 H 0.072 0.928 22 H 0.048 0.952 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.032 0.968 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.013 0.987 31 H 0.015 0.985 32 H 0.260 0.740 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.340 0.660 36 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.307 10.351 8.106 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.098 0.902 4 C -0.085 4.085 5 N -0.240 5.240 6 C -0.079 4.079 7 C -0.140 4.140 8 C -0.017 4.017 9 C -0.555 4.555 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.085 4.085 18 C -0.032 4.032 19 H 0.059 0.941 20 N -0.374 5.374 21 H 0.090 0.910 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.094 0.906 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.031 0.969 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.153 0.847 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.860 10.303 7.175 17.973 hybrid contribution 0.581 -0.462 1.146 1.366 sum -12.280 9.841 8.322 17.801 Atomic orbital electron populations 1.21699 0.94674 1.02743 1.00972 1.22103 0.95571 0.98799 0.94477 0.90234 1.23212 0.89736 0.98342 0.97206 1.64841 1.22100 1.35131 1.01962 1.22459 0.97981 0.90082 0.97399 1.21588 0.91933 1.00377 1.00074 1.19082 0.95613 0.91964 0.95002 1.21263 0.95754 1.14264 1.24246 0.92718 1.25027 0.98215 0.96096 0.95192 1.69969 1.36437 1.19132 1.28138 0.86601 0.85338 0.78373 0.77732 1.20735 1.21252 1.19870 1.22913 0.96360 0.98853 0.90419 1.22220 0.91905 0.92905 0.96159 0.94078 1.58906 1.08187 1.27979 1.42379 0.90951 0.93289 0.92782 0.90634 0.93461 0.94963 0.91378 0.92728 0.93721 0.96855 0.96625 0.93082 0.92576 0.90619 0.84726 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.08 37.16 0.30 -1.01 16 2 C -0.09 -1.01 3.64 -88.76 -0.32 -1.34 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 4 C 0.04 0.59 5.96 -1.89 -0.01 0.58 16 5 N -0.52 -8.40 5.25 -230.45 -1.21 -9.61 16 6 C 0.05 0.91 4.79 -3.82 -0.02 0.89 16 7 C -0.10 -2.24 5.24 -26.73 -0.14 -2.38 16 8 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 9 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 10 H 0.05 1.56 7.74 -52.48 -0.41 1.15 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -27.63 13.29 55.43 0.74 -26.89 16 13 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 16 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 17 C 0.04 0.63 5.72 -2.75 -0.02 0.62 16 18 C 0.08 0.92 4.04 -66.35 -0.27 0.65 16 19 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 20 N -0.84 -8.40 8.16 -3.51 -0.03 -8.43 16 21 H 0.07 0.72 7.04 -51.92 -0.37 0.35 16 22 H 0.05 0.38 7.94 -51.93 -0.41 -0.04 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.05 0.68 7.93 -51.93 -0.41 0.27 16 26 H 0.03 0.62 7.73 -51.93 -0.40 0.22 16 27 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.04 0.97 7.62 -51.93 -0.40 0.57 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.06 0.89 7.31 -51.93 -0.38 0.51 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.34 3.05 9.06 -39.29 -0.36 2.70 16 36 H 0.34 2.74 7.36 -39.29 -0.29 2.45 16 LS Contribution 285.80 15.07 4.31 4.31 Total: -1.00 -30.96 285.80 -8.60 -39.56 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.35 Total: -0.59 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -1.03 Total: -15.48 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: -0.50 Total: -44.93 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.96 -8.60 -39.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235361170.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.132 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds