Wall clock time and date at job start Mon Mar 30 2020 02:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08990 * 110.78389 * 2 1 4 4 C 1.54942 * 110.72142 * 236.75036 * 2 1 3 5 5 N 1.48536 * 103.22418 * 204.22701 * 4 2 1 6 6 C 1.46901 * 110.99521 * 159.72350 * 5 4 2 7 7 C 1.53002 * 109.47046 * 170.00175 * 6 5 4 8 8 C 1.52998 * 109.47137 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.46992 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99899 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00281 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99858 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00188 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47141 * 90.00412 * 13 11 9 15 15 H 1.48502 * 109.47373 * 209.99963 * 13 11 9 16 16 H 1.48495 * 109.47633 * 329.99986 * 13 11 9 17 17 C 1.47900 * 105.82189 * 39.21141 * 5 4 2 18 18 C 1.53998 * 107.05419 * 334.66788 * 17 5 4 19 19 H 1.09002 * 110.30566 * 242.20650 * 18 17 5 20 20 N 1.46905 * 110.30855 * 120.14309 * 18 17 5 21 21 H 1.09010 * 109.47264 * 181.79460 * 1 2 3 22 22 H 1.09005 * 109.47395 * 301.79117 * 1 2 3 23 23 H 1.08995 * 109.47420 * 61.79501 * 1 2 3 24 24 H 1.09004 * 110.66299 * 85.79479 * 4 2 1 25 25 H 1.09000 * 110.66998 * 322.66146 * 4 2 1 26 26 H 1.08996 * 109.47126 * 289.99999 * 6 5 4 27 27 H 1.08996 * 109.47465 * 50.00271 * 6 5 4 28 28 H 1.09006 * 109.46925 * 299.99840 * 7 6 5 29 29 H 1.09000 * 109.47378 * 59.99823 * 7 6 5 30 30 H 1.08996 * 109.47056 * 299.99837 * 8 7 6 31 31 H 1.08996 * 109.47444 * 60.00053 * 8 7 6 32 32 H 0.96995 * 120.00463 * 179.97438 * 12 11 9 33 33 H 1.08998 * 109.91806 * 94.01913 * 17 5 4 34 34 H 1.08995 * 109.91698 * 215.31773 * 17 5 4 35 35 H 1.00902 * 110.99555 * 61.45018 * 20 18 17 36 36 H 1.00896 * 110.99770 * 185.39978 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0782 -0.7946 -1.2119 5 7 3.4317 -1.2092 -0.7622 6 6 3.9210 -2.3498 -1.5482 7 6 5.3991 -2.5894 -1.2335 8 6 5.9089 -3.7769 -2.0525 9 6 7.3648 -4.0125 -1.7430 10 1 7.8755 -3.3783 -1.0334 11 6 8.0449 -5.0376 -2.3656 12 7 7.4232 -5.8094 -3.2301 13 14 9.8497 -5.3291 -1.9825 14 1 9.9675 -6.2754 -0.8442 15 1 10.5225 -5.9035 -3.1752 16 1 10.4941 -4.0403 -1.6235 17 6 3.2893 -1.5710 0.6648 18 6 2.0770 -0.7928 1.2091 19 1 2.3893 -0.1113 2.0004 20 7 1.0577 -1.7236 1.7119 21 1 -0.3634 -1.0272 0.0322 22 1 -0.3634 0.5414 0.8735 23 1 -0.3634 0.4857 -0.9056 24 1 2.1443 -0.1557 -2.0926 25 1 1.4559 -1.6665 -1.4137 26 1 3.3463 -3.2401 -1.2931 27 1 3.8060 -2.1351 -2.6105 28 1 5.9738 -1.6990 -1.4886 29 1 5.5142 -2.8041 -0.1710 30 1 5.3342 -4.6674 -1.7978 31 1 5.7939 -3.5618 -3.1148 32 1 7.9016 -6.5304 -3.6684 33 1 3.1160 -2.6428 0.7606 34 1 4.1886 -1.2871 1.2113 35 1 1.4193 -2.2794 2.4724 36 1 0.2229 -1.2298 1.9901 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235361170.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:08 Heat of formation + Delta-G solvation = -34.681202 kcal Electronic energy + Delta-G solvation = -14229.013630 eV Core-core repulsion = 11939.196815 eV Total energy + Delta-G solvation = -2289.816815 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.40117 -36.69379 -35.10984 -33.22296 -32.29321 -29.30118 -27.96857 -26.33026 -24.26546 -22.35989 -21.70853 -20.15742 -18.47965 -17.62389 -16.66402 -16.53910 -16.24502 -15.89720 -15.08515 -14.76887 -14.35893 -14.02103 -13.74876 -13.45457 -13.11485 -13.02595 -12.78186 -12.56713 -12.35228 -12.19843 -12.00542 -11.82580 -11.61297 -11.42804 -11.35690 -11.05318 -10.56084 -9.60440 -9.37684 -8.20546 -6.32081 1.39553 1.41514 1.52957 2.40845 3.02229 3.12299 3.57265 3.61860 3.77930 4.07848 4.21040 4.33075 4.38359 4.60681 4.64235 4.69866 4.72409 4.85062 4.87798 4.90417 5.00428 5.07577 5.10364 5.21165 5.27995 5.49693 5.51120 5.71246 5.84148 5.96878 6.05602 6.26401 6.27583 6.61958 6.84214 7.37167 8.91643 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.067083 B = 0.005170 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.292342 B = 5414.201253 C = 5551.155041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 H 0.086 0.914 4 C 0.040 3.960 5 N -0.525 5.525 6 C 0.061 3.939 7 C -0.085 4.085 8 C 0.025 3.975 9 C -0.544 4.544 10 H 0.058 0.942 11 C -0.001 4.001 12 N -0.934 5.934 13 Si 0.968 3.032 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.263 1.263 17 C 0.039 3.961 18 C 0.087 3.913 19 H 0.056 0.944 20 N -0.848 5.848 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.081 0.919 25 H 0.039 0.961 26 H 0.023 0.977 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.045 0.955 30 H -0.012 1.012 31 H -0.008 1.008 32 H 0.264 0.736 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.346 0.654 36 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.424 11.503 9.270 19.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 H 0.105 0.895 4 C -0.088 4.088 5 N -0.248 5.248 6 C -0.067 4.067 7 C -0.123 4.123 8 C -0.012 4.012 9 C -0.582 4.582 10 H 0.077 0.923 11 C -0.199 4.199 12 N -0.575 5.575 13 Si 0.792 3.208 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.187 1.187 17 C -0.090 4.090 18 C -0.025 4.025 19 H 0.074 0.926 20 N -0.382 5.382 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.079 0.921 24 H 0.099 0.901 25 H 0.057 0.943 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.007 0.993 31 H 0.010 0.990 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.159 0.841 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.001 11.472 8.356 19.247 hybrid contribution 0.581 -0.831 0.768 1.272 sum -12.421 10.641 9.123 18.728 Atomic orbital electron populations 1.21646 0.92796 1.02656 1.02315 1.22121 0.97051 0.98498 0.92746 0.89526 1.23312 0.88224 0.98466 0.98789 1.64774 1.24011 1.33421 1.02636 1.22165 0.95773 0.90987 0.97771 1.21322 0.94003 0.97948 0.99026 1.18977 0.94986 0.92932 0.94319 1.21674 0.96946 1.14843 1.24697 0.92330 1.26009 1.03550 0.95579 0.94721 1.70101 1.38656 1.19672 1.29027 0.85409 0.78820 0.78727 0.77867 1.19659 1.20540 1.18749 1.22970 0.97993 0.98436 0.89578 1.22099 0.90974 0.92769 0.96621 0.92634 1.58834 1.08395 1.27993 1.42961 0.91765 0.91267 0.92121 0.90056 0.94292 0.95884 0.91596 0.93000 0.93635 0.99317 0.98952 0.92713 0.94201 0.90996 0.84085 0.83089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.08 71.98 0.58 -1.53 16 2 C -0.08 -1.71 3.64 -9.59 -0.03 -1.75 16 3 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 4 C 0.04 1.04 5.96 86.65 0.52 1.56 16 5 N -0.52 -16.82 5.25 -883.00 -4.63 -21.45 16 6 C 0.06 2.35 4.79 86.30 0.41 2.76 16 7 C -0.08 -3.81 5.24 30.59 0.16 -3.65 16 8 C 0.03 1.42 4.97 29.85 0.15 1.57 16 9 C -0.54 -32.30 9.11 25.60 0.23 -32.07 16 10 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 11 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 12 N -0.93 -58.41 13.29 21.45 0.28 -58.12 16 13 Si 0.97 45.35 29.54 68.60 2.03 47.37 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 15 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 16 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 17 C 0.04 1.11 5.72 86.45 0.49 1.61 16 18 C 0.09 1.84 4.04 45.79 0.19 2.02 16 19 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 20 N -0.85 -15.24 8.16 -165.03 -1.35 -16.59 16 21 H 0.06 1.12 7.04 -2.38 -0.02 1.10 16 22 H 0.07 0.81 7.94 -2.38 -0.02 0.79 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.08 2.02 8.14 -2.38 -0.02 2.01 16 25 H 0.04 1.09 7.93 -2.39 -0.02 1.07 16 26 H 0.02 0.91 7.73 -2.39 -0.02 0.89 16 27 H 0.07 2.52 8.08 -2.39 -0.02 2.50 16 28 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 29 H 0.04 2.01 7.62 -2.39 -0.02 1.99 16 30 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 31 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 33 H 0.04 1.27 7.31 -2.39 -0.02 1.25 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.35 5.63 9.06 -89.69 -0.81 4.82 16 36 H 0.35 4.75 7.36 -89.70 -0.66 4.09 16 Total: -1.00 -66.39 285.80 -0.94 -67.33 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -0.43 Total: 10.54 kcal Atomic # 6 Polarization: -32.24 SS G_CDS: 3.16 Total: -29.08 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -5.69 Total: -96.16 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -66.39 -0.94 -67.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235361170.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.647 kcal (2) G-P(sol) polarization free energy of solvation -66.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds