Wall clock time and date at job start Mon Mar 30 2020 03:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47292 * 2 1 4 4 C 1.50696 * 109.47103 * 239.99713 * 2 1 3 5 5 H 1.08010 * 120.00197 * 239.99942 * 4 2 1 6 6 C 1.37870 * 120.00375 * 59.99752 * 4 2 1 7 7 N 1.31517 * 119.99617 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00486 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46922 * 90.00447 * 8 6 4 10 10 H 1.48504 * 109.47489 * 210.00191 * 8 6 4 11 11 H 1.48498 * 109.46982 * 330.00353 * 8 6 4 12 12 N 1.46906 * 109.47288 * 119.99748 * 2 1 3 13 13 C 1.46898 * 111.00073 * 176.04491 * 12 2 1 14 14 C 1.46898 * 110.99678 * 299.99967 * 12 2 1 15 15 C 1.53006 * 109.46758 * 158.19270 * 14 12 2 16 16 H 1.09001 * 110.36856 * 299.68405 * 15 14 12 17 17 C 1.54386 * 110.40877 * 177.33643 * 15 14 12 18 18 C 1.54256 * 105.05883 * 217.25452 * 17 15 14 19 19 C 1.54382 * 105.06193 * 359.97438 * 18 17 15 20 20 N 1.48555 * 110.51068 * 62.10785 * 15 14 12 21 21 H 1.09005 * 109.47604 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47061 * 300.00160 * 1 2 3 23 23 H 1.08999 * 109.47082 * 60.00221 * 1 2 3 24 24 H 0.97003 * 119.99833 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.46498 * 192.10397 * 13 12 2 26 26 H 1.08993 * 109.47300 * 312.10135 * 13 12 2 27 27 H 1.08993 * 109.47144 * 72.10510 * 13 12 2 28 28 H 1.09004 * 109.47471 * 38.19951 * 14 12 2 29 29 H 1.08995 * 109.47392 * 278.19065 * 14 12 2 30 30 H 1.09006 * 110.32561 * 336.14540 * 17 15 14 31 31 H 1.08997 * 110.32244 * 98.35853 * 17 15 14 32 32 H 1.08998 * 110.32675 * 118.89540 * 18 17 15 33 33 H 1.09003 * 110.32355 * 241.10370 * 18 17 15 34 34 H 1.09006 * 110.40857 * 142.63201 * 19 18 17 35 35 H 1.08995 * 110.41669 * 264.95721 * 19 18 17 36 36 H 1.00903 * 110.99596 * 277.86530 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2396 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3224 -1.1198 -4.0079 9 1 1.3447 -2.1618 -4.4122 10 1 2.4872 -0.1405 -5.1120 11 1 3.6308 -1.7568 -3.7118 12 7 2.0197 -0.6925 1.1995 13 6 3.4851 -0.7945 1.1871 14 6 1.5487 -0.0262 2.4211 15 6 1.5907 -1.0137 3.5890 16 1 0.9468 -1.8694 3.3857 17 6 1.1628 -0.3171 4.8987 18 6 2.0669 -0.9258 5.9903 19 6 2.9645 -1.9395 5.2485 20 7 2.9842 -1.4622 3.8416 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7094 1.1615 -3.4844 25 1 3.8074 -1.4890 1.9629 26 1 3.8157 -1.1578 0.2141 27 1 3.9192 0.1874 1.3751 28 1 0.5255 0.3200 2.2747 29 1 2.1923 0.8252 2.6419 30 1 1.3275 0.7580 4.8269 31 1 0.1152 -0.5269 5.1143 32 1 2.6753 -0.1496 6.4543 33 1 1.4630 -1.4345 6.7418 34 1 3.9713 -1.9325 5.6661 35 1 2.5366 -2.9403 5.3070 36 1 3.2445 -2.2059 3.2112 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235414295.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:21 Heat of formation + Delta-G solvation = 14.715204 kcal Electronic energy + Delta-G solvation = -14826.744394 eV Core-core repulsion = 12539.069567 eV Total energy + Delta-G solvation = -2287.674826 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.66057 -36.28928 -32.74646 -30.22379 -29.96374 -28.70079 -26.05587 -24.43303 -22.69414 -20.95916 -19.91903 -19.15873 -16.70434 -16.19372 -15.26198 -14.98116 -14.24500 -13.66548 -13.31899 -13.01435 -12.69620 -12.39773 -12.09456 -11.73214 -11.41594 -11.20732 -11.06015 -10.93062 -10.75285 -10.54143 -10.35967 -10.29237 -10.05212 -9.84970 -9.58559 -8.81398 -8.37100 -8.29089 -7.05117 -5.96897 -4.00825 3.33234 3.39372 3.42736 4.43763 4.48588 4.76654 4.95760 5.15620 5.22667 5.34902 5.51798 5.73015 5.78405 5.85138 5.97325 6.02116 6.12833 6.23838 6.31496 6.44998 6.59940 6.65846 6.92374 6.98061 7.09587 7.11457 7.24886 7.57251 7.61784 7.81906 7.87891 8.29945 8.41285 8.69765 9.06396 9.63824 11.10047 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.059400 B = 0.007141 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.270764 B = 3920.301899 C = 4236.897380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.210 3.790 3 H -0.004 1.004 4 C -0.501 4.501 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.539 5.539 13 C 0.034 3.966 14 C 0.062 3.938 15 C 0.076 3.924 16 H 0.051 0.949 17 C -0.122 4.122 18 C -0.122 4.122 19 C 0.030 3.970 20 N -0.658 5.658 21 H 0.033 0.967 22 H 0.009 0.991 23 H 0.084 0.916 24 H 0.259 0.741 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.008 0.992 28 H 0.075 0.925 29 H 0.029 0.971 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.340 -3.256 12.831 13.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.104 3.896 3 H 0.014 0.986 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.264 5.264 13 C -0.114 4.114 14 C -0.067 4.067 15 C -0.034 4.034 16 H 0.070 0.930 17 C -0.161 4.161 18 C -0.160 4.160 19 C -0.099 4.099 20 N -0.291 5.291 21 H 0.052 0.948 22 H 0.027 0.973 23 H 0.103 0.897 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.026 0.974 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.392 -2.955 12.765 13.176 hybrid contribution 0.088 -0.445 -0.917 1.023 sum 1.480 -3.400 11.848 12.414 Atomic orbital electron populations 1.21874 0.97973 0.99503 0.99756 1.19223 0.92121 0.92064 0.86185 0.98630 1.21174 1.30766 1.12164 0.89831 0.91873 1.24940 0.95311 0.95102 0.99007 1.69900 1.37145 1.23058 1.23296 0.86529 0.79195 0.79271 0.82569 1.20736 1.21379 1.19961 1.62073 1.09685 1.52538 1.02077 1.22461 0.88434 0.98882 1.01656 1.22149 1.00418 0.94120 0.90047 1.22516 0.89082 0.97505 0.94304 0.93044 1.22338 0.98762 1.00727 0.94239 1.22257 0.97709 0.98524 0.97545 1.22912 0.99623 0.96181 0.91215 1.64088 1.23800 1.38948 1.02299 0.94817 0.97267 0.89737 0.93068 0.92225 0.91094 0.97377 0.90731 0.95279 0.91202 0.91713 0.91489 0.91981 0.90844 0.94768 0.83718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 8.82 37.16 0.33 -2.98 16 2 C 0.21 5.44 2.06 -68.87 -0.14 5.30 16 3 H 0.00 -0.11 8.14 -51.93 -0.42 -0.54 16 4 C -0.50 -13.91 7.77 -34.44 -0.27 -14.18 16 5 H 0.06 1.75 6.48 -52.48 -0.34 1.41 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.87 11.32 55.43 0.63 -25.25 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.54 -11.87 4.54 -236.29 -1.07 -12.94 16 13 C 0.03 0.71 8.95 60.06 0.54 1.25 16 14 C 0.06 1.17 4.63 -3.82 -0.02 1.16 16 15 C 0.08 1.20 3.42 -66.07 -0.23 0.97 16 16 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 17 C -0.12 -1.58 6.55 -25.35 -0.17 -1.75 16 18 C -0.12 -1.38 7.00 -25.35 -0.18 -1.56 16 19 C 0.03 0.36 7.47 -2.17 -0.02 0.35 16 20 N -0.66 -9.78 5.80 -102.73 -0.60 -10.38 16 21 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.01 0.19 6.02 -51.93 -0.31 -0.12 16 23 H 0.08 2.29 6.07 -51.93 -0.32 1.98 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.06 1.06 4.54 -51.93 -0.24 0.83 16 26 H 0.07 1.57 5.89 -51.93 -0.31 1.27 16 27 H 0.01 0.16 7.89 -51.93 -0.41 -0.25 16 28 H 0.07 1.44 5.50 -51.93 -0.29 1.15 16 29 H 0.03 0.57 7.79 -51.93 -0.40 0.17 16 30 H 0.07 0.93 7.85 -51.93 -0.41 0.52 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.34 5.16 6.67 -39.29 -0.26 4.89 16 LS Contribution 272.63 15.07 4.11 4.11 Total: -1.00 -28.66 272.63 -7.99 -36.65 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.80 Total: 1.22 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -0.24 Total: -9.95 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -1.04 Total: -48.57 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.66 -7.99 -36.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235414295.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.367 kcal (2) G-P(sol) polarization free energy of solvation -28.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds