Wall clock time and date at job start Mon Mar 30 2020 03:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47292 * 2 1 4 4 C 1.50696 * 109.47103 * 239.99713 * 2 1 3 5 5 H 1.08010 * 120.00197 * 239.99942 * 4 2 1 6 6 C 1.37870 * 120.00375 * 59.99752 * 4 2 1 7 7 N 1.31517 * 119.99617 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00486 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46922 * 90.00447 * 8 6 4 10 10 H 1.48504 * 109.47489 * 210.00191 * 8 6 4 11 11 H 1.48498 * 109.46982 * 330.00353 * 8 6 4 12 12 N 1.46906 * 109.47288 * 119.99748 * 2 1 3 13 13 C 1.46898 * 111.00073 * 176.04491 * 12 2 1 14 14 C 1.46898 * 110.99678 * 299.99967 * 12 2 1 15 15 C 1.53006 * 109.46758 * 158.19270 * 14 12 2 16 16 H 1.09001 * 110.36856 * 299.68405 * 15 14 12 17 17 C 1.54386 * 110.40877 * 177.33643 * 15 14 12 18 18 C 1.54256 * 105.05883 * 217.25452 * 17 15 14 19 19 C 1.54382 * 105.06193 * 359.97438 * 18 17 15 20 20 N 1.48555 * 110.51068 * 62.10785 * 15 14 12 21 21 H 1.09005 * 109.47604 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47061 * 300.00160 * 1 2 3 23 23 H 1.08999 * 109.47082 * 60.00221 * 1 2 3 24 24 H 0.97003 * 119.99833 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.46498 * 192.10397 * 13 12 2 26 26 H 1.08993 * 109.47300 * 312.10135 * 13 12 2 27 27 H 1.08993 * 109.47144 * 72.10510 * 13 12 2 28 28 H 1.09004 * 109.47471 * 38.19951 * 14 12 2 29 29 H 1.08995 * 109.47392 * 278.19065 * 14 12 2 30 30 H 1.09006 * 110.32561 * 336.14540 * 17 15 14 31 31 H 1.08997 * 110.32244 * 98.35853 * 17 15 14 32 32 H 1.08998 * 110.32675 * 118.89540 * 18 17 15 33 33 H 1.09003 * 110.32355 * 241.10370 * 18 17 15 34 34 H 1.09006 * 110.40857 * 142.63201 * 19 18 17 35 35 H 1.08995 * 110.41669 * 264.95721 * 19 18 17 36 36 H 1.00903 * 110.99596 * 277.86530 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2396 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3224 -1.1198 -4.0079 9 1 1.3447 -2.1618 -4.4122 10 1 2.4872 -0.1405 -5.1120 11 1 3.6308 -1.7568 -3.7118 12 7 2.0197 -0.6925 1.1995 13 6 3.4851 -0.7945 1.1871 14 6 1.5487 -0.0262 2.4211 15 6 1.5907 -1.0137 3.5890 16 1 0.9468 -1.8694 3.3857 17 6 1.1628 -0.3171 4.8987 18 6 2.0669 -0.9258 5.9903 19 6 2.9645 -1.9395 5.2485 20 7 2.9842 -1.4622 3.8416 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7094 1.1615 -3.4844 25 1 3.8074 -1.4890 1.9629 26 1 3.8157 -1.1578 0.2141 27 1 3.9192 0.1874 1.3751 28 1 0.5255 0.3200 2.2747 29 1 2.1923 0.8252 2.6419 30 1 1.3275 0.7580 4.8269 31 1 0.1152 -0.5269 5.1143 32 1 2.6753 -0.1496 6.4543 33 1 1.4630 -1.4345 6.7418 34 1 3.9713 -1.9325 5.6661 35 1 2.5366 -2.9403 5.3070 36 1 3.2445 -2.2059 3.2112 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235414295.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:20 Heat of formation + Delta-G solvation = -5.000305 kcal Electronic energy + Delta-G solvation = -14827.599323 eV Core-core repulsion = 12539.069567 eV Total energy + Delta-G solvation = -2288.529755 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.95564 -37.93640 -34.75115 -31.62401 -31.32813 -30.34930 -27.78059 -26.26206 -24.39538 -22.10207 -21.20045 -20.89323 -18.31336 -17.84402 -17.08430 -16.23421 -15.95483 -15.28747 -14.88759 -14.70771 -14.12221 -13.82218 -13.49949 -13.29751 -12.93971 -12.82093 -12.58703 -12.57084 -12.27646 -12.22442 -12.05852 -11.97464 -11.69781 -11.35324 -11.26566 -10.84217 -10.49275 -9.45998 -8.88307 -8.10510 -6.22221 1.42828 1.43299 1.53831 2.42997 3.17273 3.36161 3.38627 3.93002 3.96036 4.18148 4.34846 4.46018 4.63690 4.67100 4.72430 4.79408 4.82763 4.96347 5.02398 5.04164 5.08175 5.14677 5.19270 5.26760 5.31518 5.38830 5.52955 5.73156 5.81838 5.96913 6.27042 6.38748 6.48591 6.78821 6.93827 7.46840 8.95779 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.059400 B = 0.007141 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.270764 B = 3920.301899 C = 4236.897380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.213 3.787 3 H -0.044 1.044 4 C -0.518 4.518 5 H 0.061 0.939 6 C 0.008 3.992 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.268 1.268 12 N -0.540 5.540 13 C 0.042 3.958 14 C 0.064 3.936 15 C 0.081 3.919 16 H 0.046 0.954 17 C -0.120 4.120 18 C -0.117 4.117 19 C 0.030 3.970 20 N -0.672 5.672 21 H 0.031 0.969 22 H 0.031 0.969 23 H 0.059 0.941 24 H 0.261 0.739 25 H 0.091 0.909 26 H 0.051 0.949 27 H -0.003 1.003 28 H 0.069 0.931 29 H 0.018 0.982 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.606 -4.442 14.092 14.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.106 3.894 3 H -0.027 1.027 4 C -0.556 4.556 5 H 0.079 0.921 6 C -0.190 4.190 7 N -0.562 5.562 8 Si 0.788 3.212 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.193 1.193 12 N -0.264 5.264 13 C -0.107 4.107 14 C -0.065 4.065 15 C -0.030 4.030 16 H 0.064 0.936 17 C -0.159 4.159 18 C -0.155 4.155 19 C -0.099 4.099 20 N -0.305 5.305 21 H 0.051 0.949 22 H 0.050 0.950 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.109 0.891 26 H 0.070 0.930 27 H 0.016 0.984 28 H 0.087 0.913 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.663 -4.147 14.055 14.748 hybrid contribution 0.022 -0.050 -1.249 1.250 sum 1.685 -4.196 12.806 13.581 Atomic orbital electron populations 1.21681 0.97308 0.99231 0.99656 1.19059 0.92657 0.90026 0.87683 1.02685 1.21447 1.30980 1.12256 0.90954 0.92131 1.25751 0.95431 0.95791 1.02014 1.70033 1.37959 1.24244 1.24008 0.85494 0.78866 0.78178 0.78705 1.20049 1.21010 1.19262 1.62082 1.10447 1.52037 1.01879 1.22437 0.87601 0.98977 1.01668 1.22206 0.99519 0.94766 0.89976 1.22382 0.89828 0.96612 0.94149 0.93592 1.22335 1.00099 1.00200 0.93244 1.22271 0.97486 0.98513 0.97253 1.23005 1.00720 0.96852 0.89282 1.64010 1.23077 1.39360 1.04030 0.94946 0.94997 0.92216 0.92978 0.89064 0.93015 0.98420 0.91306 0.96340 0.91762 0.90232 0.90979 0.89781 0.89670 0.93716 0.84133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.08 8.82 71.98 0.63 -5.45 16 2 C 0.21 11.27 2.06 44.17 0.09 11.36 16 3 H -0.04 -2.65 8.14 -2.39 -0.02 -2.67 16 4 C -0.52 -29.21 7.77 25.60 0.20 -29.01 16 5 H 0.06 3.38 6.48 -2.91 -0.02 3.36 16 6 C 0.01 0.47 5.30 84.65 0.45 0.92 16 7 N -0.92 -54.26 11.32 21.45 0.24 -54.02 16 8 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 9 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 12 N -0.54 -23.91 4.54 -901.50 -4.09 -28.00 16 13 C 0.04 1.72 8.95 127.69 1.14 2.86 16 14 C 0.06 2.41 4.63 86.31 0.40 2.81 16 15 C 0.08 2.41 3.42 45.07 0.15 2.56 16 16 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 17 C -0.12 -2.83 6.55 31.49 0.21 -2.63 16 18 C -0.12 -2.25 7.00 31.49 0.22 -2.03 16 19 C 0.03 0.64 7.47 86.45 0.65 1.28 16 20 N -0.67 -18.64 5.80 -478.92 -2.78 -21.42 16 21 H 0.03 1.59 8.14 -2.38 -0.02 1.57 16 22 H 0.03 1.41 6.02 -2.39 -0.01 1.40 16 23 H 0.06 3.31 6.07 -2.39 -0.01 3.29 16 24 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 25 H 0.09 3.16 4.54 -2.39 -0.01 3.15 16 26 H 0.05 2.31 5.89 -2.39 -0.01 2.30 16 27 H 0.00 -0.12 7.89 -2.39 -0.02 -0.14 16 28 H 0.07 2.64 5.50 -2.38 -0.01 2.62 16 29 H 0.02 0.73 7.79 -2.39 -0.02 0.71 16 30 H 0.06 1.59 7.85 -2.38 -0.02 1.57 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.34 9.57 6.67 -89.69 -0.60 8.97 16 Total: -1.00 -61.47 272.63 -0.01 -61.47 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.45 Total: 12.91 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 4.14 Total: -17.32 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -6.63 Total: -103.44 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -61.47 -0.01 -61.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235414295.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.474 kcal (2) G-P(sol) polarization free energy of solvation -61.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds