Wall clock time and date at job start Mon Mar 30 2020 02:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.78173 * 2 1 4 4 C 1.54941 * 110.72072 * 123.24589 * 2 1 3 5 5 N 1.48533 * 103.22162 * 155.77122 * 4 2 1 6 6 C 1.46899 * 110.99931 * 200.27522 * 5 4 2 7 7 C 1.52998 * 109.47289 * 170.00189 * 6 5 4 8 8 C 1.52999 * 109.47306 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47522 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99446 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00072 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99826 * 179.72119 * 11 9 8 13 13 Si 1.86800 * 120.00406 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46758 * 269.72576 * 13 11 9 15 15 H 1.48499 * 109.47026 * 29.72423 * 13 11 9 16 16 H 1.48496 * 109.47474 * 149.72459 * 13 11 9 17 17 C 1.47901 * 105.82563 * 320.79078 * 5 4 2 18 18 C 1.53994 * 107.05237 * 25.33258 * 17 5 4 19 19 H 1.09005 * 110.38801 * 239.81231 * 18 17 5 20 20 N 1.46900 * 110.30903 * 117.69546 * 18 17 5 21 21 H 1.08994 * 109.47034 * 298.20649 * 1 2 3 22 22 H 1.09003 * 109.47325 * 58.21102 * 1 2 3 23 23 H 1.09001 * 109.46766 * 178.20724 * 1 2 3 24 24 H 1.08995 * 110.66913 * 37.34011 * 4 2 1 25 25 H 1.08997 * 110.81100 * 274.27548 * 4 2 1 26 26 H 1.09009 * 109.47165 * 50.00489 * 6 5 4 27 27 H 1.09001 * 109.47283 * 290.00292 * 6 5 4 28 28 H 1.08995 * 109.47215 * 60.00449 * 7 6 5 29 29 H 1.09001 * 109.47042 * 300.00251 * 7 6 5 30 30 H 1.09000 * 109.47527 * 59.99882 * 8 7 6 31 31 H 1.09001 * 109.47054 * 299.99973 * 8 7 6 32 32 H 0.96999 * 120.00128 * 180.27192 * 12 11 9 33 33 H 1.09002 * 109.91843 * 144.68081 * 17 5 4 34 34 H 1.08997 * 109.91722 * 265.97878 * 17 5 4 35 35 H 1.00898 * 111.00642 * 64.28062 * 20 18 17 36 36 H 1.00905 * 111.00274 * 188.23915 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0782 -0.7945 1.2120 5 7 3.4317 -1.2092 0.7622 6 6 3.9212 -2.3497 1.5482 7 6 5.1928 -2.9050 0.9038 8 6 5.7022 -4.0932 1.7220 9 6 6.9552 -4.6399 1.0876 10 1 7.3486 -4.1854 0.1903 11 6 7.5987 -5.7206 1.6521 12 7 8.6890 -6.2011 1.0954 13 14 6.9179 -6.5071 3.2037 14 1 7.5166 -5.8519 4.3944 15 1 5.4426 -6.3408 3.2366 16 1 7.2533 -7.9536 3.2137 17 6 3.2893 -1.5710 -0.6647 18 6 2.0771 -0.7929 -1.2091 19 1 1.3202 -1.4823 -1.5833 20 7 2.4982 0.1274 -2.2739 21 1 -0.3633 0.4857 0.9056 22 1 -0.3634 0.5414 -0.8735 23 1 -0.3633 -1.0272 -0.0322 24 1 1.4560 -1.6663 1.4137 25 1 2.1442 -0.1581 2.0944 26 1 3.1577 -3.1273 1.5743 27 1 4.1417 -2.0228 2.5644 28 1 5.9563 -2.1275 0.8777 29 1 4.9723 -3.2319 -0.1124 30 1 4.9387 -4.8707 1.7478 31 1 5.9227 -3.7667 2.7383 32 1 9.1395 -6.9639 1.4904 33 1 4.1887 -1.2872 -1.2114 34 1 3.1161 -2.6429 -0.7605 35 1 2.8574 -0.3796 -3.0690 36 1 1.7413 0.7368 -2.5455 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235586107.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:11 Heat of formation + Delta-G solvation = -11.962867 kcal Electronic energy + Delta-G solvation = -14258.604789 eV Core-core repulsion = 11969.773115 eV Total energy + Delta-G solvation = -2288.831674 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.33058 -35.26924 -33.27098 -32.27037 -31.10498 -27.85643 -27.04690 -24.80979 -22.50369 -20.88002 -20.51058 -19.14679 -16.65335 -16.44626 -15.44550 -15.31409 -14.54983 -14.37930 -14.08787 -13.40575 -13.15199 -12.86633 -12.67257 -12.17651 -12.11147 -11.65228 -11.34357 -11.15224 -10.97138 -10.79151 -10.70768 -10.61625 -9.86911 -9.69100 -9.52349 -9.13082 -8.82317 -8.50198 -8.12416 -6.00701 -3.98243 3.32988 3.39869 3.43787 4.18190 4.36875 4.48279 4.51570 4.62933 5.08096 5.20362 5.32399 5.33368 5.44857 5.47924 5.63307 5.71781 5.74692 5.78235 5.88611 5.96464 6.15151 6.18660 6.22381 6.56788 6.63826 6.91563 7.04624 7.18615 7.29693 7.34029 7.38729 7.50413 7.83986 8.58930 9.04950 9.62054 11.12961 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054925 B = 0.005775 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.662973 B = 4847.616466 C = 5203.101783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.092 0.908 4 C 0.038 3.962 5 N -0.511 5.511 6 C 0.044 3.956 7 C -0.101 4.101 8 C -0.013 4.013 9 C -0.518 4.518 10 H 0.071 0.929 11 C 0.065 3.935 12 N -0.905 5.905 13 Si 0.880 3.120 14 H -0.277 1.277 15 H -0.267 1.267 16 H -0.288 1.288 17 C 0.044 3.956 18 C 0.082 3.918 19 H 0.039 0.961 20 N -0.838 5.838 21 H 0.058 0.942 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.041 0.959 25 H 0.080 0.920 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.012 0.988 31 H 0.012 0.988 32 H 0.262 0.738 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.342 0.658 36 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.005 10.989 -2.715 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.111 0.889 4 C -0.090 4.090 5 N -0.235 5.235 6 C -0.084 4.084 7 C -0.139 4.139 8 C -0.051 4.051 9 C -0.556 4.556 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.544 5.544 13 Si 0.708 3.292 14 H -0.203 1.203 15 H -0.191 1.191 16 H -0.214 1.214 17 C -0.085 4.085 18 C -0.030 4.030 19 H 0.057 0.943 20 N -0.368 5.368 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.098 0.902 26 H 0.046 0.954 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.031 0.969 31 H 0.030 0.970 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.154 0.846 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.953 11.520 -2.083 19.788 hybrid contribution -1.509 -1.748 0.156 2.314 sum -17.461 9.772 -1.927 20.102 Atomic orbital electron populations 1.21811 0.94974 1.01668 1.01776 1.22159 0.94525 1.00618 0.93850 0.88945 1.23278 0.89772 0.98282 0.97708 1.64817 1.21943 1.34669 1.02075 1.22507 0.97714 0.90270 0.97913 1.21533 0.94623 0.98608 0.99137 1.19554 0.96674 0.93338 0.95539 1.21153 1.07898 1.14259 1.12259 0.91040 1.25037 0.94655 0.96679 0.97199 1.69922 1.18767 1.25203 1.40554 0.86767 0.80010 0.78424 0.84003 1.20262 1.19130 1.21444 1.22902 0.98298 0.97051 0.90228 1.22315 0.95467 0.93024 0.92233 0.94347 1.58763 1.39887 1.24340 1.13791 0.92244 0.92761 0.92819 0.94037 0.90206 0.95353 0.90965 0.91920 0.92858 0.96938 0.97014 0.92801 0.89318 0.93577 0.84565 0.85030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.16 37.16 0.34 -0.88 16 2 C -0.09 -1.00 3.33 -88.76 -0.30 -1.30 16 3 H 0.09 1.08 8.06 -51.93 -0.42 0.66 16 4 C 0.04 0.48 6.00 -1.90 -0.01 0.47 16 5 N -0.51 -8.00 5.40 -230.45 -1.24 -9.25 16 6 C 0.04 0.76 4.99 -3.83 -0.02 0.74 16 7 C -0.10 -2.11 4.90 -26.73 -0.13 -2.24 16 8 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 9 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 10 H 0.07 2.25 7.99 -52.49 -0.42 1.84 16 11 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 12 N -0.91 -28.49 13.96 55.43 0.77 -27.72 16 13 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 15 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 17 C 0.04 0.64 5.12 -2.75 -0.01 0.62 16 18 C 0.08 0.94 3.70 -66.36 -0.25 0.69 16 19 H 0.04 0.42 7.82 -51.93 -0.41 0.01 16 20 N -0.84 -8.55 9.13 -3.52 -0.03 -8.58 16 21 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 0.46 8.10 -51.93 -0.42 0.04 16 24 H 0.04 0.52 7.76 -51.93 -0.40 0.11 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.03 0.48 7.89 -51.92 -0.41 0.07 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.05 1.11 6.63 -51.93 -0.34 0.76 16 30 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 31 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 32 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 33 H 0.09 1.40 7.93 -51.93 -0.41 0.99 16 34 H 0.05 0.70 7.14 -51.93 -0.37 0.33 16 35 H 0.34 3.11 9.08 -39.29 -0.36 2.76 16 36 H 0.34 2.75 9.02 -39.29 -0.35 2.40 16 LS Contribution 284.27 15.07 4.28 4.28 Total: -1.00 -31.43 284.27 -8.17 -39.60 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.36 Total: 0.17 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -0.92 Total: -16.01 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -0.50 Total: -45.55 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.43 -8.17 -39.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235586107.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.633 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds