Wall clock time and date at job start Mon Mar 30 2020 02:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.78173 * 2 1 4 4 C 1.54941 * 110.72072 * 123.24589 * 2 1 3 5 5 N 1.48533 * 103.22162 * 155.77122 * 4 2 1 6 6 C 1.46899 * 110.99931 * 200.27522 * 5 4 2 7 7 C 1.52998 * 109.47289 * 170.00189 * 6 5 4 8 8 C 1.52999 * 109.47306 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47522 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99446 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00072 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99826 * 179.72119 * 11 9 8 13 13 Si 1.86800 * 120.00406 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46758 * 269.72576 * 13 11 9 15 15 H 1.48499 * 109.47026 * 29.72423 * 13 11 9 16 16 H 1.48496 * 109.47474 * 149.72459 * 13 11 9 17 17 C 1.47901 * 105.82563 * 320.79078 * 5 4 2 18 18 C 1.53994 * 107.05237 * 25.33258 * 17 5 4 19 19 H 1.09005 * 110.38801 * 239.81231 * 18 17 5 20 20 N 1.46900 * 110.30903 * 117.69546 * 18 17 5 21 21 H 1.08994 * 109.47034 * 298.20649 * 1 2 3 22 22 H 1.09003 * 109.47325 * 58.21102 * 1 2 3 23 23 H 1.09001 * 109.46766 * 178.20724 * 1 2 3 24 24 H 1.08995 * 110.66913 * 37.34011 * 4 2 1 25 25 H 1.08997 * 110.81100 * 274.27548 * 4 2 1 26 26 H 1.09009 * 109.47165 * 50.00489 * 6 5 4 27 27 H 1.09001 * 109.47283 * 290.00292 * 6 5 4 28 28 H 1.08995 * 109.47215 * 60.00449 * 7 6 5 29 29 H 1.09001 * 109.47042 * 300.00251 * 7 6 5 30 30 H 1.09000 * 109.47527 * 59.99882 * 8 7 6 31 31 H 1.09001 * 109.47054 * 299.99973 * 8 7 6 32 32 H 0.96999 * 120.00128 * 180.27192 * 12 11 9 33 33 H 1.09002 * 109.91843 * 144.68081 * 17 5 4 34 34 H 1.08997 * 109.91722 * 265.97878 * 17 5 4 35 35 H 1.00898 * 111.00642 * 64.28062 * 20 18 17 36 36 H 1.00905 * 111.00274 * 188.23915 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0782 -0.7945 1.2120 5 7 3.4317 -1.2092 0.7622 6 6 3.9212 -2.3497 1.5482 7 6 5.1928 -2.9050 0.9038 8 6 5.7022 -4.0932 1.7220 9 6 6.9552 -4.6399 1.0876 10 1 7.3486 -4.1854 0.1903 11 6 7.5987 -5.7206 1.6521 12 7 8.6890 -6.2011 1.0954 13 14 6.9179 -6.5071 3.2037 14 1 7.5166 -5.8519 4.3944 15 1 5.4426 -6.3408 3.2366 16 1 7.2533 -7.9536 3.2137 17 6 3.2893 -1.5710 -0.6647 18 6 2.0771 -0.7929 -1.2091 19 1 1.3202 -1.4823 -1.5833 20 7 2.4982 0.1274 -2.2739 21 1 -0.3633 0.4857 0.9056 22 1 -0.3634 0.5414 -0.8735 23 1 -0.3633 -1.0272 -0.0322 24 1 1.4560 -1.6663 1.4137 25 1 2.1442 -0.1581 2.0944 26 1 3.1577 -3.1273 1.5743 27 1 4.1417 -2.0228 2.5644 28 1 5.9563 -2.1275 0.8777 29 1 4.9723 -3.2319 -0.1124 30 1 4.9387 -4.8707 1.7478 31 1 5.9227 -3.7667 2.7383 32 1 9.1395 -6.9639 1.4904 33 1 4.1887 -1.2872 -1.2114 34 1 3.1161 -2.6429 -0.7605 35 1 2.8574 -0.3796 -3.0690 36 1 1.7413 0.7368 -2.5455 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235586107.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:11 Heat of formation + Delta-G solvation = -35.878958 kcal Electronic energy + Delta-G solvation = -14259.641869 eV Core-core repulsion = 11969.773115 eV Total energy + Delta-G solvation = -2289.868754 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.39812 -36.69830 -35.03249 -33.53612 -32.60522 -29.29864 -28.26896 -26.13004 -23.92860 -22.36526 -21.77678 -20.39097 -18.86997 -17.46380 -16.73117 -16.24453 -16.05688 -15.91621 -15.41356 -14.77582 -14.57478 -14.19840 -13.84997 -13.65388 -13.31325 -13.07139 -12.84149 -12.60624 -12.32221 -12.07191 -11.89457 -11.76688 -11.61571 -11.44096 -11.36422 -11.21471 -10.77305 -9.65484 -9.31350 -8.30455 -6.35220 1.35347 1.37349 1.49596 2.35768 3.03636 3.04623 3.53658 3.60177 3.66868 4.16345 4.18232 4.25782 4.33073 4.51862 4.57757 4.61559 4.64366 4.78784 4.84546 4.87022 4.95039 5.01428 5.04915 5.08543 5.27075 5.37653 5.47924 5.56533 5.64166 5.96210 6.09980 6.28286 6.30118 6.62523 6.72624 7.29414 8.86750 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054925 B = 0.005775 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.662973 B = 4847.616466 C = 5203.101783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 H 0.085 0.915 4 C 0.035 3.965 5 N -0.527 5.527 6 C 0.055 3.945 7 C -0.091 4.091 8 C -0.009 4.009 9 C -0.535 4.535 10 H 0.027 0.973 11 C 0.002 3.998 12 N -0.953 5.953 13 Si 0.955 3.045 14 H -0.265 1.265 15 H -0.246 1.246 16 H -0.282 1.282 17 C 0.041 3.959 18 C 0.088 3.912 19 H 0.050 0.950 20 N -0.845 5.845 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.088 0.912 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.020 0.980 31 H 0.021 0.979 32 H 0.267 0.733 33 H 0.068 0.932 34 H 0.036 0.964 35 H 0.347 0.653 36 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.580 11.423 -1.398 22.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.104 4.104 3 H 0.103 0.897 4 C -0.092 4.092 5 N -0.251 5.251 6 C -0.073 4.073 7 C -0.129 4.129 8 C -0.047 4.047 9 C -0.573 4.573 10 H 0.045 0.955 11 C -0.194 4.194 12 N -0.594 5.594 13 Si 0.778 3.222 14 H -0.190 1.190 15 H -0.169 1.169 16 H -0.208 1.208 17 C -0.088 4.088 18 C -0.024 4.024 19 H 0.068 0.932 20 N -0.377 5.377 21 H 0.087 0.913 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.106 0.894 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.160 0.840 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.550 11.984 -0.783 22.099 hybrid contribution -0.627 -1.834 -0.361 1.971 sum -19.177 10.151 -1.144 21.728 Atomic orbital electron populations 1.21767 0.92711 1.02134 1.02978 1.22119 0.96252 0.99593 0.92433 0.89673 1.23397 0.88154 0.98865 0.98808 1.64759 1.24262 1.33681 1.02386 1.22277 0.95925 0.91129 0.97947 1.21343 0.96076 0.96904 0.98580 1.19489 0.94583 0.94635 0.95967 1.21494 1.09911 1.14607 1.11299 0.95453 1.26075 0.94818 0.97239 1.01288 1.70080 1.20486 1.26066 1.42740 0.85585 0.80330 0.77353 0.78926 1.18972 1.16935 1.20802 1.22889 0.98994 0.97014 0.89908 1.22225 0.94077 0.93259 0.92884 0.93236 1.58698 1.40658 1.24456 1.13937 0.91253 0.91415 0.92697 0.93339 0.89404 0.94601 0.90328 0.93619 0.93652 0.96193 0.96101 0.92437 0.91406 0.94588 0.83990 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.16 71.98 0.66 -1.22 16 2 C -0.08 -1.63 3.33 -9.59 -0.03 -1.67 16 3 H 0.08 1.80 8.06 -2.39 -0.02 1.78 16 4 C 0.04 0.82 6.00 86.65 0.52 1.34 16 5 N -0.53 -15.92 5.40 -883.01 -4.77 -20.69 16 6 C 0.06 1.85 4.99 86.30 0.43 2.28 16 7 C -0.09 -3.83 4.90 30.59 0.15 -3.68 16 8 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 9 C -0.54 -32.23 9.66 25.60 0.25 -31.98 16 10 H 0.03 1.82 7.99 -2.91 -0.02 1.79 16 11 C 0.00 0.14 5.47 84.65 0.46 0.60 16 12 N -0.95 -61.38 13.96 21.45 0.30 -61.08 16 13 Si 0.96 45.13 27.47 68.60 1.88 47.02 16 14 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 15 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 16 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 17 C 0.04 1.17 5.12 86.45 0.44 1.61 16 18 C 0.09 1.87 3.70 45.79 0.17 2.04 16 19 H 0.05 0.97 7.82 -2.38 -0.02 0.95 16 20 N -0.85 -16.02 9.13 -165.04 -1.51 -17.53 16 21 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 23 H 0.05 0.75 8.10 -2.39 -0.02 0.73 16 24 H 0.05 1.07 7.76 -2.39 -0.02 1.05 16 25 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.04 1.15 7.89 -2.38 -0.02 1.13 16 27 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.04 1.94 6.63 -2.39 -0.02 1.92 16 30 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 31 H 0.02 0.97 7.57 -2.39 -0.02 0.96 16 32 H 0.27 15.93 8.31 -92.71 -0.77 15.15 16 33 H 0.07 2.20 7.93 -2.39 -0.02 2.18 16 34 H 0.04 1.09 7.14 -2.39 -0.02 1.07 16 35 H 0.35 5.98 9.08 -89.70 -0.81 5.16 16 36 H 0.35 4.98 9.02 -89.69 -0.81 4.17 16 Total: -1.00 -68.41 284.27 -1.55 -69.96 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -0.63 Total: 13.29 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 3.17 Total: -30.98 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -5.97 Total: -99.29 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.02 kcal Total: -68.41 -1.55 -69.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235586107.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.082 kcal (2) G-P(sol) polarization free energy of solvation -68.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds