Wall clock time and date at job start Mon Mar 30 2020 02:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.52410 * 2 1 4 4 C 1.53121 * 109.57897 * 120.16395 * 2 1 3 5 5 C 1.53040 * 109.27861 * 177.59034 * 4 2 1 6 6 N 1.46841 * 109.52399 * 300.81877 * 5 4 2 7 7 C 1.46899 * 110.99999 * 185.83957 * 6 5 4 8 8 C 1.50701 * 109.47107 * 300.13225 * 7 6 5 9 9 H 1.07996 * 120.00159 * 4.13623 * 8 7 6 10 10 C 1.37879 * 119.99719 * 184.13623 * 8 7 6 11 11 N 1.31509 * 119.99609 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00234 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.46946 * 89.99926 * 12 10 8 14 14 H 1.48495 * 109.47306 * 210.00331 * 12 10 8 15 15 H 1.48502 * 109.46989 * 330.00360 * 12 10 8 16 16 C 1.46852 * 111.19668 * 61.74505 * 6 5 4 17 17 H 1.08999 * 109.46342 * 58.26186 * 16 6 5 18 18 C 1.53000 * 109.46226 * 178.24374 * 16 6 5 19 19 N 1.46901 * 109.47484 * 55.51286 * 18 16 6 20 20 C 1.53042 * 109.52425 * 298.25409 * 16 6 5 21 21 H 1.09000 * 109.46590 * 180.12384 * 1 2 3 22 22 H 1.09005 * 109.46676 * 300.12061 * 1 2 3 23 23 H 1.08994 * 109.47166 * 60.12180 * 1 2 3 24 24 H 1.09002 * 109.50104 * 297.53261 * 4 2 1 25 25 H 1.08991 * 109.50089 * 57.64930 * 4 2 1 26 26 H 1.08998 * 109.46036 * 180.80621 * 5 4 2 27 27 H 1.09002 * 109.46169 * 60.83827 * 5 4 2 28 28 H 1.08999 * 109.46982 * 60.13652 * 7 6 5 29 29 H 1.09002 * 109.47030 * 180.13101 * 7 6 5 30 30 H 0.97002 * 119.99806 * 179.97438 * 11 10 8 31 31 H 1.09003 * 109.47186 * 175.51956 * 18 16 6 32 32 H 1.09005 * 109.46965 * 295.51913 * 18 16 6 33 33 H 1.00899 * 110.99492 * 65.88108 * 19 18 16 34 34 H 1.00896 * 111.00066 * 189.83447 * 19 18 16 35 35 H 1.08996 * 109.50064 * 179.12049 * 20 16 6 36 36 H 1.09002 * 109.50334 * 299.24206 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0431 -0.7249 1.2473 5 6 3.5723 -0.7736 1.2102 6 7 4.0117 -1.4766 -0.0018 7 6 5.4686 -1.6641 -0.0027 8 6 6.1481 -0.3201 0.0527 9 1 5.5587 0.5793 0.1527 10 6 7.5223 -0.2388 -0.0242 11 7 8.1153 0.9340 0.0246 12 14 8.5420 -1.7945 -0.1964 13 1 8.7282 -2.1074 -1.6361 14 1 9.8674 -1.5908 0.4414 15 1 7.8407 -2.9220 0.4685 16 6 3.5709 -0.7729 -1.2130 17 1 3.9664 0.2428 -1.2072 18 6 4.0859 -1.5135 -2.4488 19 7 3.6417 -2.9130 -2.4016 20 6 2.0417 -0.7242 -1.2484 21 1 -0.3632 -1.0277 0.0022 22 1 -0.3633 0.5157 0.8890 23 1 -0.3633 0.5119 -0.8910 24 1 1.7176 -0.1894 2.1392 25 1 1.6471 -1.7401 1.2669 26 1 3.9402 -1.3017 2.0899 27 1 3.9680 0.2421 1.2046 28 1 5.7595 -2.2545 0.8662 29 1 5.7674 -2.1851 -0.9123 30 1 9.0821 0.9913 -0.0291 31 1 3.6933 -1.0377 -3.3475 32 1 5.1753 -1.4786 -2.4655 33 1 2.6379 -2.9765 -2.4817 34 1 4.0970 -3.4611 -3.1159 35 1 1.7152 -0.1882 -2.1395 36 1 1.6456 -1.7395 -1.2680 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235595949.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:32 Heat of formation + Delta-G solvation = -8.418882 kcal Electronic energy + Delta-G solvation = -15235.494950 eV Core-core repulsion = 12946.816954 eV Total energy + Delta-G solvation = -2288.677996 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.85299 -34.73057 -33.72607 -32.07740 -29.65452 -28.66977 -25.85592 -24.69532 -22.44167 -21.31390 -19.83756 -18.61699 -16.63166 -15.61011 -15.07041 -14.80402 -14.13276 -14.01347 -13.56379 -13.33529 -12.92441 -12.40995 -12.14697 -11.86393 -11.68112 -11.61819 -11.20900 -11.02368 -10.71486 -10.38685 -10.29360 -10.18266 -9.90320 -9.64681 -9.57848 -9.20495 -8.52218 -8.04706 -6.91667 -6.05164 -4.03326 3.31010 3.39039 3.46236 4.45157 4.93918 5.13113 5.17837 5.27766 5.29621 5.33057 5.71953 5.82478 5.88127 5.92916 6.02391 6.09456 6.14291 6.16789 6.35739 6.44831 6.49905 6.60155 6.67027 6.74812 6.90240 7.02524 7.15195 7.30661 7.64539 7.69470 7.95332 8.29074 8.38094 8.54039 8.99452 9.59652 11.08026 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036261 B = 0.010217 C = 0.009044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.989561 B = 2739.856794 C = 3095.115720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.063 0.937 4 C -0.108 4.108 5 C 0.059 3.941 6 N -0.507 5.507 7 C 0.156 3.844 8 C -0.548 4.548 9 H 0.072 0.928 10 C 0.070 3.930 11 N -0.903 5.903 12 Si 0.878 3.122 13 H -0.278 1.278 14 H -0.289 1.289 15 H -0.263 1.263 16 C 0.096 3.904 17 H 0.048 0.952 18 C 0.070 3.930 19 N -0.829 5.829 20 C -0.105 4.105 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.022 0.978 29 H 0.035 0.965 30 H 0.262 0.738 31 H 0.015 0.985 32 H 0.082 0.918 33 H 0.330 0.670 34 H 0.328 0.672 35 H 0.050 0.950 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.957 -4.250 -2.874 13.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 H 0.081 0.919 4 C -0.146 4.146 5 C -0.069 4.069 6 N -0.231 5.231 7 C 0.030 3.970 8 C -0.586 4.586 9 H 0.090 0.910 10 C -0.132 4.132 11 N -0.542 5.542 12 Si 0.705 3.295 13 H -0.204 1.204 14 H -0.215 1.215 15 H -0.187 1.187 16 C -0.014 4.014 17 H 0.065 0.935 18 C -0.061 4.061 19 N -0.358 5.358 20 C -0.143 4.143 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.100 0.900 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.068 0.932 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.680 -4.634 -2.138 12.747 hybrid contribution 0.822 0.425 -1.056 1.404 sum -10.858 -4.209 -3.194 12.075 Atomic orbital electron populations 1.21807 0.95995 1.01305 1.00877 1.21150 0.94547 0.99474 0.95994 0.91851 1.21651 0.96671 1.00058 0.96253 1.21903 0.92972 0.98043 0.94012 1.62271 1.14581 1.46584 0.99650 1.20158 0.83781 0.96041 0.97059 1.21815 0.92357 0.93747 1.50730 0.90988 1.24972 0.97993 0.95756 0.94469 1.69939 1.09729 1.23594 1.50904 0.86808 0.79628 0.84480 0.78587 1.20387 1.21517 1.18708 1.21391 0.92866 0.96056 0.91041 0.93455 1.21833 1.01252 0.88001 0.94984 1.58511 1.10624 1.10933 1.55683 1.21684 0.96139 1.00184 0.96337 0.92927 0.93192 0.93313 0.92816 0.91903 0.91946 0.94338 0.96033 0.94707 0.92859 0.96708 0.89998 0.85731 0.86099 0.93163 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.21 37.16 0.34 -1.37 16 2 C -0.09 -1.39 2.79 -90.49 -0.25 -1.64 16 3 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 4 C -0.11 -1.74 5.38 -26.65 -0.14 -1.88 16 5 C 0.06 1.19 5.04 -3.84 -0.02 1.17 16 6 N -0.51 -10.72 4.43 -228.12 -1.01 -11.74 16 7 C 0.16 3.84 3.77 -4.98 -0.02 3.82 16 8 C -0.55 -15.34 8.28 -34.44 -0.29 -15.62 16 9 H 0.07 2.20 6.09 -52.49 -0.32 1.88 16 10 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 11 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 12 Si 0.88 21.86 27.39 -169.99 -4.66 17.20 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.26 -6.39 6.66 56.52 0.38 -6.02 16 16 C 0.10 1.85 1.86 -67.72 -0.13 1.72 16 17 H 0.05 1.06 7.01 -51.93 -0.36 0.70 16 18 C 0.07 1.25 5.72 -3.82 -0.02 1.23 16 19 N -0.83 -12.96 9.22 -10.37 -0.10 -13.05 16 20 C -0.11 -1.64 4.43 -26.65 -0.12 -1.76 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.06 1.26 8.12 -51.93 -0.42 0.84 16 27 H 0.04 0.87 6.59 -51.93 -0.34 0.53 16 28 H 0.02 0.55 7.49 -51.93 -0.39 0.17 16 29 H 0.03 0.86 5.24 -51.93 -0.27 0.59 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 1.70 6.50 -51.93 -0.34 1.36 16 33 H 0.33 4.52 7.60 -39.29 -0.30 4.22 16 34 H 0.33 4.47 9.08 -39.29 -0.36 4.11 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.01 6.87 -51.93 -0.36 0.65 16 LS Contribution 271.87 15.07 4.10 4.10 Total: -1.00 -30.07 271.87 -7.63 -37.70 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.00 Total: 5.17 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -0.74 Total: -12.40 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.33 Total: -51.76 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.66 Total: 17.20 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.07 -7.63 -37.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235595949.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.280 kcal (2) G-P(sol) polarization free energy of solvation -30.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds