Wall clock time and date at job start Mon Mar 30 2020 02:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.52410 * 2 1 4 4 C 1.53121 * 109.57897 * 120.16395 * 2 1 3 5 5 C 1.53040 * 109.27861 * 177.59034 * 4 2 1 6 6 N 1.46841 * 109.52399 * 300.81877 * 5 4 2 7 7 C 1.46899 * 110.99999 * 185.83957 * 6 5 4 8 8 C 1.50701 * 109.47107 * 300.13225 * 7 6 5 9 9 H 1.07996 * 120.00159 * 4.13623 * 8 7 6 10 10 C 1.37879 * 119.99719 * 184.13623 * 8 7 6 11 11 N 1.31509 * 119.99609 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00234 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.46946 * 89.99926 * 12 10 8 14 14 H 1.48495 * 109.47306 * 210.00331 * 12 10 8 15 15 H 1.48502 * 109.46989 * 330.00360 * 12 10 8 16 16 C 1.46852 * 111.19668 * 61.74505 * 6 5 4 17 17 H 1.08999 * 109.46342 * 58.26186 * 16 6 5 18 18 C 1.53000 * 109.46226 * 178.24374 * 16 6 5 19 19 N 1.46901 * 109.47484 * 55.51286 * 18 16 6 20 20 C 1.53042 * 109.52425 * 298.25409 * 16 6 5 21 21 H 1.09000 * 109.46590 * 180.12384 * 1 2 3 22 22 H 1.09005 * 109.46676 * 300.12061 * 1 2 3 23 23 H 1.08994 * 109.47166 * 60.12180 * 1 2 3 24 24 H 1.09002 * 109.50104 * 297.53261 * 4 2 1 25 25 H 1.08991 * 109.50089 * 57.64930 * 4 2 1 26 26 H 1.08998 * 109.46036 * 180.80621 * 5 4 2 27 27 H 1.09002 * 109.46169 * 60.83827 * 5 4 2 28 28 H 1.08999 * 109.46982 * 60.13652 * 7 6 5 29 29 H 1.09002 * 109.47030 * 180.13101 * 7 6 5 30 30 H 0.97002 * 119.99806 * 179.97438 * 11 10 8 31 31 H 1.09003 * 109.47186 * 175.51956 * 18 16 6 32 32 H 1.09005 * 109.46965 * 295.51913 * 18 16 6 33 33 H 1.00899 * 110.99492 * 65.88108 * 19 18 16 34 34 H 1.00896 * 111.00066 * 189.83447 * 19 18 16 35 35 H 1.08996 * 109.50064 * 179.12049 * 20 16 6 36 36 H 1.09002 * 109.50334 * 299.24206 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0431 -0.7249 1.2473 5 6 3.5723 -0.7736 1.2102 6 7 4.0117 -1.4766 -0.0018 7 6 5.4686 -1.6641 -0.0027 8 6 6.1481 -0.3201 0.0527 9 1 5.5587 0.5793 0.1527 10 6 7.5223 -0.2388 -0.0242 11 7 8.1153 0.9340 0.0246 12 14 8.5420 -1.7945 -0.1964 13 1 8.7282 -2.1074 -1.6361 14 1 9.8674 -1.5908 0.4414 15 1 7.8407 -2.9220 0.4685 16 6 3.5709 -0.7729 -1.2130 17 1 3.9664 0.2428 -1.2072 18 6 4.0859 -1.5135 -2.4488 19 7 3.6417 -2.9130 -2.4016 20 6 2.0417 -0.7242 -1.2484 21 1 -0.3632 -1.0277 0.0022 22 1 -0.3633 0.5157 0.8890 23 1 -0.3633 0.5119 -0.8910 24 1 1.7176 -0.1894 2.1392 25 1 1.6471 -1.7401 1.2669 26 1 3.9402 -1.3017 2.0899 27 1 3.9680 0.2421 1.2046 28 1 5.7595 -2.2545 0.8662 29 1 5.7674 -2.1851 -0.9123 30 1 9.0821 0.9913 -0.0291 31 1 3.6933 -1.0377 -3.3475 32 1 5.1753 -1.4786 -2.4655 33 1 2.6379 -2.9765 -2.4817 34 1 4.0970 -3.4611 -3.1159 35 1 1.7152 -0.1882 -2.1395 36 1 1.6456 -1.7395 -1.2680 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235595949.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:31 Heat of formation + Delta-G solvation = -31.314921 kcal Electronic energy + Delta-G solvation = -15236.487796 eV Core-core repulsion = 12946.816954 eV Total energy + Delta-G solvation = -2289.670842 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.38180 -36.16922 -35.35627 -34.11087 -31.06559 -30.32797 -27.55949 -26.05665 -24.16071 -23.00313 -21.16819 -20.33600 -18.70852 -17.02458 -16.68931 -16.47952 -15.89888 -15.45086 -15.01042 -14.80538 -14.50880 -14.18320 -13.55579 -13.36737 -13.16624 -13.15221 -12.77371 -12.54834 -12.36449 -12.04600 -11.93893 -11.87706 -11.70518 -11.38011 -11.04312 -10.84381 -10.71213 -9.31313 -8.76728 -8.31331 -6.34611 1.32714 1.35019 1.48577 2.33537 3.04399 3.35412 3.88649 3.94185 3.97578 4.02327 4.35002 4.46265 4.57433 4.62693 4.76647 4.80572 4.85406 4.90111 5.00335 5.10362 5.11689 5.15791 5.20547 5.34384 5.35295 5.38713 5.42023 5.55012 5.67645 6.18570 6.37791 6.47378 6.68492 6.74455 6.86993 7.32904 8.85291 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036261 B = 0.010217 C = 0.009044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.989561 B = 2739.856794 C = 3095.115720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.095 4.095 3 H 0.043 0.957 4 C -0.098 4.098 5 C 0.057 3.943 6 N -0.499 5.499 7 C 0.167 3.833 8 C -0.543 4.543 9 H 0.030 0.970 10 C 0.010 3.990 11 N -0.950 5.950 12 Si 0.948 3.052 13 H -0.265 1.265 14 H -0.285 1.285 15 H -0.250 1.250 16 C 0.092 3.908 17 H 0.003 0.997 18 C 0.077 3.923 19 N -0.832 5.832 20 C -0.095 4.095 21 H 0.064 0.936 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.000 1.000 28 H 0.013 0.987 29 H 0.039 0.961 30 H 0.265 0.735 31 H 0.037 0.963 32 H 0.047 0.953 33 H 0.346 0.654 34 H 0.342 0.658 35 H 0.069 0.931 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.777 -6.339 -3.530 15.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.114 4.114 3 H 0.062 0.938 4 C -0.136 4.136 5 C -0.071 4.071 6 N -0.222 5.222 7 C 0.039 3.961 8 C -0.582 4.582 9 H 0.048 0.952 10 C -0.188 4.188 11 N -0.591 5.591 12 Si 0.771 3.229 13 H -0.191 1.191 14 H -0.211 1.211 15 H -0.174 1.174 16 C -0.017 4.017 17 H 0.021 0.979 18 C -0.055 4.055 19 N -0.364 5.364 20 C -0.133 4.133 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.074 0.926 27 H 0.018 0.982 28 H 0.031 0.969 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.160 0.840 34 H 0.155 0.845 35 H 0.087 0.913 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.535 -6.734 -2.803 15.375 hybrid contribution 1.354 1.164 -0.838 1.972 sum -12.181 -5.571 -3.641 13.880 Atomic orbital electron populations 1.21718 0.92841 1.02473 1.02019 1.21168 0.97078 0.98047 0.95094 0.93843 1.21588 0.92935 1.01295 0.97777 1.21964 0.96269 0.95459 0.93434 1.62327 1.12115 1.46898 1.00881 1.19965 0.85907 0.93642 0.96589 1.21985 0.92377 0.94076 1.49793 0.95222 1.25900 0.99382 0.99281 0.94213 1.70088 1.10216 1.26174 1.52606 0.85698 0.77725 0.80200 0.79253 1.19051 1.21060 1.17398 1.21494 0.95752 0.93634 0.90847 0.97943 1.21618 0.99157 0.89637 0.95061 1.58383 1.11943 1.09415 1.56651 1.21629 0.92680 1.01465 0.97546 0.91666 0.92271 0.92109 0.91155 0.90568 0.92629 0.98205 0.96875 0.94283 0.92657 0.94495 0.93466 0.84024 0.84507 0.91282 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.21 71.98 0.66 -2.06 16 2 C -0.10 -2.68 2.79 -10.71 -0.03 -2.71 16 3 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 4 C -0.10 -3.00 5.38 30.65 0.16 -2.83 16 5 C 0.06 2.35 5.04 86.33 0.44 2.79 16 6 N -0.50 -21.19 4.43 -875.64 -3.88 -25.07 16 7 C 0.17 8.29 3.77 85.56 0.32 8.61 16 8 C -0.54 -31.78 8.28 25.60 0.21 -31.57 16 9 H 0.03 1.95 6.09 -2.91 -0.02 1.93 16 10 C 0.01 0.57 5.47 84.66 0.46 1.04 16 11 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 12 Si 0.95 45.50 27.39 68.60 1.88 47.38 16 13 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 14 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 15 H -0.25 -11.44 6.66 99.48 0.66 -10.78 16 16 C 0.09 3.56 1.86 44.94 0.08 3.64 16 17 H 0.00 0.12 7.01 -2.39 -0.02 0.11 16 18 C 0.08 2.67 5.72 86.30 0.49 3.16 16 19 N -0.83 -23.91 9.22 -186.71 -1.72 -25.63 16 20 C -0.10 -2.76 4.43 30.65 0.14 -2.62 16 21 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 22 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.06 2.29 8.12 -2.39 -0.02 2.27 16 27 H 0.00 -0.02 6.59 -2.39 -0.02 -0.03 16 28 H 0.01 0.67 7.49 -2.39 -0.02 0.66 16 29 H 0.04 1.92 5.24 -2.39 -0.01 1.91 16 30 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.96 6.50 -2.38 -0.02 1.95 16 33 H 0.35 8.22 7.60 -89.69 -0.68 7.54 16 34 H 0.34 8.38 9.08 -89.70 -0.81 7.57 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 2.18 6.87 -2.39 -0.02 2.16 16 Total: -1.00 -67.41 271.87 -0.96 -68.37 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -0.48 Total: 17.73 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: 2.94 Total: -22.56 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -5.30 Total: -110.91 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.88 Total: 47.38 kcal Total: -67.41 -0.96 -68.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235595949.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.054 kcal (2) G-P(sol) polarization free energy of solvation -67.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds