Wall clock time and date at job start Mon Mar 30 2020 02:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.73459 * 2 1 4 4 C 1.50781 * 109.73722 * 120.69238 * 2 1 3 5 5 N 1.47741 * 111.92188 * 214.25849 * 4 2 1 6 6 C 1.46905 * 110.99796 * 84.94014 * 5 4 2 7 7 C 1.48073 * 113.78678 * 318.87685 * 5 4 2 8 8 C 1.50738 * 112.93777 * 318.28302 * 7 5 4 9 9 C 1.54509 * 108.93793 * 92.65326 * 8 7 5 10 10 N 1.40088 * 111.51723 * 283.98088 * 9 8 7 11 11 C 1.46901 * 110.99929 * 188.14153 * 10 9 8 12 12 C 1.50701 * 109.46689 * 61.36592 * 11 10 9 13 13 H 1.07994 * 120.00384 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99685 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00028 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99937 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47186 * 90.00005 * 16 14 12 18 18 H 1.48504 * 109.46793 * 209.99743 * 16 14 12 19 19 H 1.48498 * 109.47201 * 329.99603 * 16 14 12 20 20 H 1.09002 * 109.47153 * 180.65605 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.65796 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.65777 * 1 2 3 23 23 H 1.08994 * 108.99192 * 334.89436 * 4 2 1 24 24 H 1.09009 * 108.98612 * 93.63075 * 4 2 1 25 25 H 1.09000 * 109.46763 * 296.35461 * 6 5 4 26 26 H 1.08997 * 109.47001 * 56.35442 * 6 5 4 27 27 H 1.08995 * 109.46833 * 176.35697 * 6 5 4 28 28 H 1.09002 * 108.78588 * 197.38646 * 7 5 4 29 29 H 1.09000 * 108.78824 * 79.17636 * 7 5 4 30 30 H 1.09003 * 109.55552 * 332.82260 * 8 7 5 31 31 H 1.08993 * 109.56205 * 212.49381 * 8 7 5 32 32 H 1.09003 * 109.06768 * 163.45860 * 9 8 7 33 33 H 1.09004 * 109.01860 * 44.46948 * 9 8 7 34 34 H 1.08998 * 109.46803 * 181.35988 * 11 10 9 35 35 H 1.09001 * 109.47464 * 301.36594 * 11 10 9 36 36 H 0.97003 * 120.00568 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8980 1.0260 0.0000 4 6 2.0392 -0.7244 1.2204 5 7 3.2917 -0.1307 1.7317 6 6 3.0113 1.0015 2.6249 7 6 4.2468 0.2561 0.6684 8 6 4.3430 -0.7661 -0.4352 9 6 3.3454 -0.3916 -1.5540 10 7 2.0288 -0.7088 -1.1958 11 6 1.1161 -0.5296 -2.3329 12 6 1.5197 -1.4552 -3.4515 13 1 2.3688 -2.1113 -3.3299 14 6 0.8041 -1.4652 -4.6301 15 7 -0.2309 -0.6674 -4.7777 16 14 1.3038 -2.6130 -6.0165 17 1 0.5959 -3.9096 -5.8652 18 1 0.9424 -2.0009 -7.3204 19 1 2.7703 -2.8409 -5.9662 20 1 -0.3633 -1.0276 0.0118 21 1 -0.3633 0.5036 -0.8958 22 1 -0.3634 0.5240 0.8841 23 1 1.2805 -0.6797 2.0017 24 1 2.2204 -1.7682 0.9634 25 1 2.5164 1.7936 2.0630 26 1 2.3628 0.6719 3.4366 27 1 3.9469 1.3788 3.0376 28 1 5.2334 0.3865 1.1133 29 1 3.9291 1.2066 0.2399 30 1 4.0964 -1.7523 -0.0416 31 1 5.3560 -0.7748 -0.8374 32 1 3.6082 -0.9345 -2.4619 33 1 3.4138 0.6791 -1.7471 34 1 0.0974 -0.7595 -2.0208 35 1 1.1658 0.5026 -2.6795 36 1 -0.7342 -0.6741 -5.6069 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235616000.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:26 Heat of formation + Delta-G solvation = 16.419386 kcal Electronic energy + Delta-G solvation = -15171.713043 eV Core-core repulsion = 12884.112116 eV Total energy + Delta-G solvation = -2287.600928 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.36261 -35.65964 -32.98531 -32.58739 -29.72495 -27.32590 -26.35767 -25.12559 -22.80954 -22.09391 -19.77388 -18.97178 -16.55687 -15.63939 -15.52025 -14.79948 -14.60123 -14.32314 -13.60282 -12.89090 -12.70766 -12.49768 -12.28525 -11.93488 -11.59271 -11.46587 -11.14559 -11.08487 -10.97086 -10.78584 -10.68050 -10.42874 -10.32202 -9.89928 -9.54714 -9.09652 -8.41565 -7.97819 -7.04682 -6.02700 -4.03680 3.32045 3.37968 3.41420 4.16659 4.42144 4.87823 5.19626 5.31747 5.35441 5.42949 5.53385 5.59053 5.68557 5.78950 5.82227 5.94078 6.01382 6.10502 6.17010 6.26080 6.35069 6.41959 6.66704 6.75336 6.77420 6.81952 7.30825 7.36064 7.39850 7.46903 7.81758 8.16056 8.41454 8.65407 9.04861 9.60381 11.08048 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048238 B = 0.008411 C = 0.007531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.316366 B = 3328.001800 C = 3716.966578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.062 3.938 3 H 0.029 0.971 4 C 0.064 3.936 5 N -0.553 5.553 6 C 0.028 3.972 7 C 0.063 3.937 8 C -0.126 4.126 9 C 0.080 3.920 10 N -0.546 5.546 11 C 0.191 3.809 12 C -0.510 4.510 13 H 0.063 0.937 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.897 3.103 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.274 1.274 20 H 0.065 0.935 21 H 0.067 0.933 22 H 0.044 0.956 23 H 0.064 0.936 24 H 0.087 0.913 25 H 0.021 0.979 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.028 0.972 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.001 0.999 34 H 0.043 0.957 35 H -0.014 1.014 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.268 2.321 10.747 12.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.047 4.047 3 H 0.046 0.954 4 C -0.063 4.063 5 N -0.278 5.278 6 C -0.121 4.121 7 C -0.065 4.065 8 C -0.164 4.164 9 C -0.050 4.050 10 N -0.271 5.271 11 C 0.067 3.933 12 C -0.549 4.549 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.206 1.206 18 H -0.214 1.214 19 H -0.199 1.199 20 H 0.084 0.916 21 H 0.086 0.914 22 H 0.063 0.937 23 H 0.083 0.917 24 H 0.106 0.894 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.046 0.954 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.019 0.981 34 H 0.061 0.939 35 H 0.004 0.996 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.377 1.570 10.992 12.337 hybrid contribution -0.213 1.009 -1.534 1.849 sum 5.164 2.579 9.458 11.080 Atomic orbital electron populations 1.21984 0.94539 1.02573 1.01220 1.21756 0.95375 0.94933 0.92661 0.95352 1.22125 0.89231 1.00217 0.94762 1.62162 1.14191 1.30955 1.20450 1.22323 1.00731 0.92522 0.96490 1.21852 0.95348 0.97371 0.91886 1.21665 0.99175 1.00111 0.95431 1.20980 0.88979 0.97112 0.97891 1.59199 1.02811 1.58501 1.06637 1.19847 0.92350 0.94991 0.86132 1.21245 1.13975 1.21506 0.98151 0.91866 1.24980 0.95064 0.95908 0.98602 1.69953 1.19016 1.38352 1.26515 0.86517 0.78871 0.80852 0.81284 1.20610 1.21361 1.19881 0.91626 0.91412 0.93679 0.91737 0.89442 0.96045 0.91684 0.92084 0.91864 0.95421 0.90153 0.91472 0.89442 0.98115 0.93883 0.99649 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 7.71 37.16 0.29 -2.30 16 2 C 0.06 1.15 2.42 -68.39 -0.17 0.98 16 3 H 0.03 0.55 6.30 -51.93 -0.33 0.22 16 4 C 0.06 1.04 4.83 -4.47 -0.02 1.02 16 5 N -0.55 -8.30 4.99 -243.98 -1.22 -9.52 16 6 C 0.03 0.35 9.36 60.07 0.56 0.91 16 7 C 0.06 0.95 5.00 -4.31 -0.02 0.93 16 8 C -0.13 -2.05 5.68 -27.07 -0.15 -2.21 16 9 C 0.08 1.63 4.82 -6.55 -0.03 1.60 16 10 N -0.55 -11.86 3.99 -233.12 -0.93 -12.79 16 11 C 0.19 4.96 3.81 -4.97 -0.02 4.94 16 12 C -0.51 -14.30 8.34 -34.44 -0.29 -14.59 16 13 H 0.06 1.75 6.76 -52.49 -0.36 1.40 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.67 13.29 55.43 0.74 -25.94 16 16 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H 0.06 1.19 7.98 -51.93 -0.41 0.77 16 21 H 0.07 1.35 6.42 -51.93 -0.33 1.02 16 22 H 0.04 0.66 8.12 -51.93 -0.42 0.24 16 23 H 0.06 0.93 7.31 -51.93 -0.38 0.56 16 24 H 0.09 1.54 7.20 -51.92 -0.37 1.17 16 25 H 0.02 0.28 7.73 -51.93 -0.40 -0.13 16 26 H 0.06 0.73 7.97 -51.93 -0.41 0.31 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.03 0.45 6.41 -51.93 -0.33 0.11 16 30 H 0.08 1.39 7.19 -51.93 -0.37 1.01 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.93 6.10 -51.93 -0.32 1.62 16 33 H 0.00 0.02 7.59 -51.93 -0.39 -0.37 16 34 H 0.04 1.17 5.65 -51.93 -0.29 0.87 16 35 H -0.01 -0.40 8.14 -51.93 -0.42 -0.83 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 270.17 15.07 4.07 4.07 Total: -1.00 -29.20 270.17 -8.27 -37.46 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -5.96 Total: -2.69 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 0.05 Total: -7.24 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -1.41 Total: -48.25 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.20 -8.27 -37.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235616000.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.882 kcal (2) G-P(sol) polarization free energy of solvation -29.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds