Wall clock time and date at job start Mon Mar 30 2020 02:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.73459 * 2 1 4 4 C 1.50781 * 109.73722 * 120.69238 * 2 1 3 5 5 N 1.47741 * 111.92188 * 214.25849 * 4 2 1 6 6 C 1.46905 * 110.99796 * 84.94014 * 5 4 2 7 7 C 1.48073 * 113.78678 * 318.87685 * 5 4 2 8 8 C 1.50738 * 112.93777 * 318.28302 * 7 5 4 9 9 C 1.54509 * 108.93793 * 92.65326 * 8 7 5 10 10 N 1.40088 * 111.51723 * 283.98088 * 9 8 7 11 11 C 1.46901 * 110.99929 * 188.14153 * 10 9 8 12 12 C 1.50701 * 109.46689 * 61.36592 * 11 10 9 13 13 H 1.07994 * 120.00384 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99685 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00028 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99937 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47186 * 90.00005 * 16 14 12 18 18 H 1.48504 * 109.46793 * 209.99743 * 16 14 12 19 19 H 1.48498 * 109.47201 * 329.99603 * 16 14 12 20 20 H 1.09002 * 109.47153 * 180.65605 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.65796 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.65777 * 1 2 3 23 23 H 1.08994 * 108.99192 * 334.89436 * 4 2 1 24 24 H 1.09009 * 108.98612 * 93.63075 * 4 2 1 25 25 H 1.09000 * 109.46763 * 296.35461 * 6 5 4 26 26 H 1.08997 * 109.47001 * 56.35442 * 6 5 4 27 27 H 1.08995 * 109.46833 * 176.35697 * 6 5 4 28 28 H 1.09002 * 108.78588 * 197.38646 * 7 5 4 29 29 H 1.09000 * 108.78824 * 79.17636 * 7 5 4 30 30 H 1.09003 * 109.55552 * 332.82260 * 8 7 5 31 31 H 1.08993 * 109.56205 * 212.49381 * 8 7 5 32 32 H 1.09003 * 109.06768 * 163.45860 * 9 8 7 33 33 H 1.09004 * 109.01860 * 44.46948 * 9 8 7 34 34 H 1.08998 * 109.46803 * 181.35988 * 11 10 9 35 35 H 1.09001 * 109.47464 * 301.36594 * 11 10 9 36 36 H 0.97003 * 120.00568 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8980 1.0260 0.0000 4 6 2.0392 -0.7244 1.2204 5 7 3.2917 -0.1307 1.7317 6 6 3.0113 1.0015 2.6249 7 6 4.2468 0.2561 0.6684 8 6 4.3430 -0.7661 -0.4352 9 6 3.3454 -0.3916 -1.5540 10 7 2.0288 -0.7088 -1.1958 11 6 1.1161 -0.5296 -2.3329 12 6 1.5197 -1.4552 -3.4515 13 1 2.3688 -2.1113 -3.3299 14 6 0.8041 -1.4652 -4.6301 15 7 -0.2309 -0.6674 -4.7777 16 14 1.3038 -2.6130 -6.0165 17 1 0.5959 -3.9096 -5.8652 18 1 0.9424 -2.0009 -7.3204 19 1 2.7703 -2.8409 -5.9662 20 1 -0.3633 -1.0276 0.0118 21 1 -0.3633 0.5036 -0.8958 22 1 -0.3634 0.5240 0.8841 23 1 1.2805 -0.6797 2.0017 24 1 2.2204 -1.7682 0.9634 25 1 2.5164 1.7936 2.0630 26 1 2.3628 0.6719 3.4366 27 1 3.9469 1.3788 3.0376 28 1 5.2334 0.3865 1.1133 29 1 3.9291 1.2066 0.2399 30 1 4.0964 -1.7523 -0.0416 31 1 5.3560 -0.7748 -0.8374 32 1 3.6082 -0.9345 -2.4619 33 1 3.4138 0.6791 -1.7471 34 1 0.0974 -0.7595 -2.0208 35 1 1.1658 0.5026 -2.6795 36 1 -0.7342 -0.6741 -5.6069 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235616000.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:26 Heat of formation + Delta-G solvation = -4.325854 kcal Electronic energy + Delta-G solvation = -15172.612624 eV Core-core repulsion = 12884.112116 eV Total energy + Delta-G solvation = -2288.500509 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.85661 -37.15229 -34.68336 -34.42418 -31.28811 -29.01548 -27.83121 -26.67733 -24.38686 -23.75431 -21.32450 -20.43854 -18.62026 -17.14760 -16.91344 -16.51902 -16.37332 -15.67967 -15.24924 -14.40515 -14.30071 -13.95609 -13.75349 -13.39605 -13.29239 -12.95097 -12.72384 -12.71668 -12.49893 -12.42901 -12.18395 -12.09751 -11.89241 -11.55104 -11.26512 -11.09632 -10.59065 -9.27462 -8.79795 -8.21181 -6.30973 1.39881 1.41422 1.52221 2.39201 2.99597 3.11012 3.24184 3.91925 3.98454 4.03894 4.16491 4.24670 4.43018 4.54160 4.56735 4.68339 4.77981 4.80525 4.85694 4.89909 5.01798 5.03907 5.09942 5.15730 5.24101 5.34778 5.38696 5.41957 5.64863 6.04434 6.13869 6.20264 6.47040 6.78748 6.93942 7.38604 8.89730 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048238 B = 0.008411 C = 0.007531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.316366 B = 3328.001800 C = 3716.966578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.063 3.937 3 H 0.021 0.979 4 C 0.074 3.926 5 N -0.555 5.555 6 C 0.027 3.973 7 C 0.064 3.936 8 C -0.112 4.112 9 C 0.080 3.920 10 N -0.549 5.549 11 C 0.208 3.792 12 C -0.528 4.528 13 H 0.063 0.937 14 C 0.002 3.998 15 N -0.934 5.934 16 Si 0.968 3.032 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.265 1.265 20 H 0.060 0.940 21 H 0.035 0.965 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.014 0.986 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.014 0.986 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.063 0.937 33 H -0.013 1.013 34 H 0.027 0.973 35 H -0.052 1.052 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.433 1.704 12.072 13.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.046 4.046 3 H 0.039 0.961 4 C -0.054 4.054 5 N -0.279 5.279 6 C -0.121 4.121 7 C -0.063 4.063 8 C -0.150 4.150 9 C -0.050 4.050 10 N -0.274 5.274 11 C 0.082 3.918 12 C -0.566 4.566 13 H 0.081 0.919 14 C -0.196 4.196 15 N -0.575 5.575 16 Si 0.793 3.207 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.189 1.189 20 H 0.079 0.921 21 H 0.054 0.946 22 H 0.100 0.900 23 H 0.106 0.894 24 H 0.091 0.909 25 H 0.032 0.968 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.033 0.967 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.004 0.996 34 H 0.045 0.955 35 H -0.035 1.035 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.558 0.957 12.346 14.013 hybrid contribution -0.580 1.261 -1.901 2.354 sum 5.978 2.217 10.445 12.237 Atomic orbital electron populations 1.21918 0.94105 1.02307 1.01392 1.21897 0.95801 0.94608 0.92287 0.96083 1.21977 0.90506 0.98976 0.93987 1.62219 1.13311 1.32214 1.20205 1.22430 1.02084 0.91427 0.96198 1.21856 0.96787 0.95991 0.91696 1.21563 0.98942 1.00075 0.94393 1.20998 0.89315 0.95818 0.98879 1.59219 1.02784 1.59341 1.06067 1.19495 0.92618 0.92317 0.87361 1.21563 1.14050 1.21797 0.99198 0.91926 1.25899 0.94898 0.97479 1.01295 1.70083 1.20105 1.39894 1.27383 0.85399 0.78917 0.78669 0.77741 1.19716 1.20822 1.18916 0.92140 0.94583 0.90030 0.89378 0.90884 0.96777 0.90017 0.90296 0.89126 0.96742 0.90689 0.89001 0.91908 0.99552 0.95463 1.03491 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 7.71 71.98 0.55 -4.41 16 2 C 0.06 2.32 2.42 44.04 0.11 2.43 16 3 H 0.02 0.82 6.30 -2.38 -0.02 0.80 16 4 C 0.07 2.24 4.83 85.42 0.41 2.65 16 5 N -0.56 -15.14 4.99 -925.81 -4.62 -19.77 16 6 C 0.03 0.58 9.36 127.69 1.20 1.77 16 7 C 0.06 1.78 5.00 85.34 0.43 2.21 16 8 C -0.11 -3.49 5.68 30.37 0.17 -3.32 16 9 C 0.08 3.29 4.82 88.05 0.42 3.71 16 10 N -0.55 -24.42 3.99 -891.45 -3.56 -27.97 16 11 C 0.21 11.28 3.81 85.56 0.33 11.61 16 12 C -0.53 -30.42 8.34 25.60 0.21 -30.21 16 13 H 0.06 3.54 6.76 -2.91 -0.02 3.52 16 14 C 0.00 0.13 5.46 84.66 0.46 0.59 16 15 N -0.93 -56.85 13.29 21.45 0.28 -56.57 16 16 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 20 H 0.06 2.19 7.98 -2.39 -0.02 2.17 16 21 H 0.04 1.49 6.42 -2.39 -0.02 1.47 16 22 H 0.08 2.27 8.12 -2.38 -0.02 2.26 16 23 H 0.09 2.28 7.31 -2.39 -0.02 2.26 16 24 H 0.07 2.47 7.20 -2.38 -0.02 2.45 16 25 H 0.01 0.32 7.73 -2.39 -0.02 0.31 16 26 H 0.08 1.51 7.97 -2.39 -0.02 1.49 16 27 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.01 0.44 6.41 -2.39 -0.02 0.43 16 30 H 0.07 2.46 7.19 -2.39 -0.02 2.44 16 31 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.06 2.86 6.10 -2.39 -0.01 2.84 16 33 H -0.01 -0.59 7.59 -2.39 -0.02 -0.60 16 34 H 0.03 1.56 5.65 -2.39 -0.01 1.54 16 35 H -0.05 -3.19 8.14 -2.39 -0.02 -3.21 16 36 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -64.09 270.17 -0.54 -64.63 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: 1.03 Total: 5.85 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: 4.29 Total: -12.96 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -7.89 Total: -104.31 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.09 -0.54 -64.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235616000.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.308 kcal (2) G-P(sol) polarization free energy of solvation -64.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds