Wall clock time and date at job start Mon Mar 30 2020 03:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46897 * 109.47377 * 2 1 4 4 C 1.47907 * 110.99980 * 291.91442 * 3 2 1 5 5 C 1.50803 * 108.50013 * 153.78847 * 4 3 2 6 6 C 1.53695 * 112.09975 * 92.54888 * 5 4 3 7 7 N 1.48057 * 112.47136 * 318.55382 * 6 5 4 8 8 C 1.46906 * 110.99769 * 192.19754 * 7 6 5 9 9 C 1.44572 * 113.85606 * 318.31714 * 7 6 5 10 10 C 1.40009 * 111.00258 * 163.94406 * 3 2 1 11 11 H 1.09005 * 108.95984 * 67.42737 * 10 3 2 12 12 C 1.50696 * 108.96028 * 308.68279 * 10 3 2 13 13 H 1.08003 * 119.99803 * 334.85313 * 12 10 3 14 14 C 1.37883 * 120.00155 * 154.85564 * 12 10 3 15 15 N 1.31514 * 119.99758 * 180.02562 * 14 12 10 16 16 Si 1.86797 * 119.99820 * 359.97438 * 14 12 10 17 17 H 1.48497 * 109.47321 * 90.00454 * 16 14 12 18 18 H 1.48504 * 109.46664 * 209.99935 * 16 14 12 19 19 H 1.48491 * 109.47221 * 329.99823 * 16 14 12 20 20 H 1.09000 * 109.46784 * 299.99739 * 1 2 3 21 21 H 1.09000 * 109.46826 * 59.99856 * 1 2 3 22 22 H 1.08996 * 109.46851 * 179.97438 * 1 2 3 23 23 H 1.09010 * 109.47229 * 239.99936 * 2 1 3 24 24 H 1.09006 * 109.47349 * 120.00613 * 2 1 3 25 25 H 1.08999 * 109.63228 * 273.49027 * 4 3 2 26 26 H 1.09005 * 109.63623 * 34.08819 * 4 3 2 27 27 H 1.09000 * 108.95607 * 331.87603 * 5 4 3 28 28 H 1.09002 * 108.95700 * 213.23154 * 5 4 3 29 29 H 1.09004 * 108.88140 * 197.77978 * 6 5 4 30 30 H 1.08994 * 108.80368 * 79.27611 * 6 5 4 31 31 H 1.08999 * 109.46667 * 187.68542 * 8 7 6 32 32 H 1.08998 * 109.47409 * 307.68943 * 8 7 6 33 33 H 1.09000 * 109.46773 * 67.69147 * 8 7 6 34 34 H 1.08996 * 109.57448 * 334.41872 * 9 7 6 35 35 H 1.09006 * 109.57362 * 214.04114 * 9 7 6 36 36 H 0.97003 * 119.99866 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7106 2.0565 -1.2811 5 6 1.6192 3.5412 -1.0332 6 6 2.9626 4.2502 -1.2669 7 7 4.1088 3.4822 -0.7297 8 6 5.3274 4.3024 -0.7064 9 6 3.8594 2.8879 0.5643 10 6 3.3713 1.4393 0.3615 11 1 3.9667 0.9715 -0.4226 12 6 3.5658 0.6746 1.6454 13 1 2.7399 0.5498 2.3300 14 6 4.7982 0.1342 1.9460 15 7 4.9678 -0.5336 3.0662 16 14 6.2265 0.3495 0.7615 17 1 6.9662 1.5922 1.0985 18 1 7.1405 -0.8158 0.8713 19 1 5.7083 0.4429 -0.6270 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 2.5030 1.8536 -2.0015 26 1 0.7589 1.6903 -1.6663 27 1 1.3045 3.7095 -0.0033 28 1 0.8727 3.9668 -1.7038 29 1 2.9348 5.2269 -0.7836 30 1 3.1036 4.3914 -2.3384 31 1 6.1800 3.6786 -0.4380 32 1 5.4915 4.7376 -1.6921 33 1 5.2147 5.0995 0.0285 34 1 3.0944 3.4610 1.0881 35 1 4.7798 2.8847 1.1483 36 1 5.8349 -0.9134 3.2779 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250213537.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:52 Heat of formation + Delta-G solvation = 20.481561 kcal Electronic energy + Delta-G solvation = -15509.296067 eV Core-core repulsion = 13221.871289 eV Total energy + Delta-G solvation = -2287.424778 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.87745 -35.76221 -33.08808 -31.65981 -30.59646 -27.49683 -25.91843 -25.22261 -22.51832 -21.47620 -19.30962 -19.19712 -16.99861 -15.78004 -14.87553 -14.56234 -14.25538 -14.11925 -13.78557 -13.17325 -12.72971 -12.46300 -12.21124 -12.03773 -11.70577 -11.36773 -11.15129 -11.06082 -10.86204 -10.44403 -10.25925 -10.17604 -10.01701 -9.71245 -9.67111 -9.00224 -8.56640 -7.58091 -6.99641 -6.05786 -4.04194 3.30475 3.40002 3.49883 4.44902 4.49082 4.92520 5.27884 5.34749 5.49651 5.63327 5.73146 5.83290 5.91191 6.02739 6.09556 6.14226 6.19534 6.21581 6.27638 6.37489 6.44504 6.55002 6.58480 6.69810 6.82180 6.90181 7.20870 7.38181 7.59927 7.69894 7.90252 8.23933 8.41537 8.88032 9.03893 9.59266 11.06216 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.023015 B = 0.016747 C = 0.010730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.282240 B = 1671.528130 C = 2608.938593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.059 3.941 3 N -0.537 5.537 4 C 0.063 3.937 5 C -0.116 4.116 6 C 0.066 3.934 7 N -0.562 5.562 8 C 0.031 3.969 9 C 0.069 3.931 10 C 0.196 3.804 11 H 0.007 0.993 12 C -0.505 4.505 13 H 0.081 0.919 14 C 0.072 3.928 15 N -0.899 5.899 16 Si 0.868 3.132 17 H -0.278 1.278 18 H -0.293 1.293 19 H -0.255 1.255 20 H 0.056 0.944 21 H 0.041 0.959 22 H 0.046 0.954 23 H 0.013 0.987 24 H 0.103 0.897 25 H 0.037 0.963 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.023 0.977 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.019 0.981 34 H 0.040 0.960 35 H 0.063 0.937 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.140 6.693 -8.527 11.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.068 4.068 3 N -0.261 5.261 4 C -0.065 4.065 5 C -0.154 4.154 6 C -0.061 4.061 7 N -0.287 5.287 8 C -0.117 4.117 9 C -0.059 4.059 10 C 0.086 3.914 11 H 0.025 0.975 12 C -0.544 4.544 13 H 0.099 0.901 14 C -0.130 4.130 15 N -0.537 5.537 16 Si 0.696 3.304 17 H -0.204 1.204 18 H -0.219 1.219 19 H -0.179 1.179 20 H 0.075 0.925 21 H 0.060 0.940 22 H 0.065 0.935 23 H 0.032 0.968 24 H 0.121 0.879 25 H 0.056 0.944 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.037 0.963 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.157 6.469 -8.371 11.367 hybrid contribution 1.295 0.451 -0.560 1.481 sum -2.862 6.921 -8.931 11.656 Atomic orbital electron populations 1.21838 0.97083 1.00052 1.01169 1.22022 0.93374 0.89530 1.01914 1.59149 1.21548 1.16391 1.29010 1.21713 0.99485 0.93597 0.91687 1.21420 0.95344 0.96201 1.02467 1.22321 0.90712 0.94153 0.98922 1.60967 1.03214 1.34606 1.29938 1.22325 0.93404 0.96005 0.99970 1.22445 0.99732 0.97051 0.86721 1.18638 0.84933 0.91705 0.96164 0.97544 1.21078 0.97550 1.32160 1.03589 0.90062 1.24971 0.98408 0.94630 0.94971 1.69904 1.24081 1.36095 1.23656 0.86986 0.82618 0.77423 0.83361 1.20392 1.21914 1.17931 0.92471 0.93976 0.93488 0.96834 0.87891 0.94428 0.92080 0.90962 0.92249 0.95842 0.92174 0.91918 0.92433 0.96281 0.94195 0.91811 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.93 37.16 0.37 -2.00 16 2 C 0.06 1.20 5.41 -3.82 -0.02 1.18 16 3 N -0.54 -11.44 3.88 -232.88 -0.90 -12.35 16 4 C 0.06 1.13 5.16 -4.37 -0.02 1.11 16 5 C -0.12 -1.85 5.36 -27.47 -0.15 -2.00 16 6 C 0.07 1.07 5.46 -2.82 -0.02 1.05 16 7 N -0.56 -10.81 4.20 -242.60 -1.02 -11.83 16 8 C 0.03 0.52 9.28 60.07 0.56 1.08 16 9 C 0.07 1.52 4.37 -4.44 -0.02 1.50 16 10 C 0.20 4.70 1.20 -71.80 -0.09 4.61 16 11 H 0.01 0.19 5.44 -51.93 -0.28 -0.10 16 12 C -0.51 -13.93 7.02 -34.44 -0.24 -14.17 16 13 H 0.08 2.45 7.55 -52.48 -0.40 2.06 16 14 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 15 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 16 Si 0.87 21.82 26.15 -169.99 -4.45 17.37 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 19 H -0.25 -6.38 6.01 56.52 0.34 -6.04 16 20 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 21 H 0.04 0.63 6.35 -51.93 -0.33 0.30 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.01 0.27 8.10 -51.92 -0.42 -0.15 16 24 H 0.10 2.41 5.84 -51.93 -0.30 2.11 16 25 H 0.04 0.73 7.57 -51.93 -0.39 0.33 16 26 H 0.06 0.98 5.99 -51.93 -0.31 0.67 16 27 H 0.07 1.26 7.23 -51.93 -0.38 0.89 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.02 0.35 8.03 -51.93 -0.42 -0.06 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 32 H 0.06 0.82 8.11 -51.93 -0.42 0.40 16 33 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.04 0.88 6.93 -51.93 -0.36 0.52 16 35 H 0.06 1.50 6.14 -51.93 -0.32 1.18 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 267.42 15.07 4.03 4.03 Total: -1.00 -29.39 267.42 -7.35 -36.73 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -6.06 Total: -1.91 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 0.28 Total: -5.68 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -1.15 Total: -50.55 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.45 Total: 17.37 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.39 -7.35 -36.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250213537.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.214 kcal (2) G-P(sol) polarization free energy of solvation -29.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds