Wall clock time and date at job start Mon Mar 30 2020 03:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46897 * 109.47377 * 2 1 4 4 C 1.47907 * 110.99980 * 291.91442 * 3 2 1 5 5 C 1.50803 * 108.50013 * 153.78847 * 4 3 2 6 6 C 1.53695 * 112.09975 * 92.54888 * 5 4 3 7 7 N 1.48057 * 112.47136 * 318.55382 * 6 5 4 8 8 C 1.46906 * 110.99769 * 192.19754 * 7 6 5 9 9 C 1.44572 * 113.85606 * 318.31714 * 7 6 5 10 10 C 1.40009 * 111.00258 * 163.94406 * 3 2 1 11 11 H 1.09005 * 108.95984 * 67.42737 * 10 3 2 12 12 C 1.50696 * 108.96028 * 308.68279 * 10 3 2 13 13 H 1.08003 * 119.99803 * 334.85313 * 12 10 3 14 14 C 1.37883 * 120.00155 * 154.85564 * 12 10 3 15 15 N 1.31514 * 119.99758 * 180.02562 * 14 12 10 16 16 Si 1.86797 * 119.99820 * 359.97438 * 14 12 10 17 17 H 1.48497 * 109.47321 * 90.00454 * 16 14 12 18 18 H 1.48504 * 109.46664 * 209.99935 * 16 14 12 19 19 H 1.48491 * 109.47221 * 329.99823 * 16 14 12 20 20 H 1.09000 * 109.46784 * 299.99739 * 1 2 3 21 21 H 1.09000 * 109.46826 * 59.99856 * 1 2 3 22 22 H 1.08996 * 109.46851 * 179.97438 * 1 2 3 23 23 H 1.09010 * 109.47229 * 239.99936 * 2 1 3 24 24 H 1.09006 * 109.47349 * 120.00613 * 2 1 3 25 25 H 1.08999 * 109.63228 * 273.49027 * 4 3 2 26 26 H 1.09005 * 109.63623 * 34.08819 * 4 3 2 27 27 H 1.09000 * 108.95607 * 331.87603 * 5 4 3 28 28 H 1.09002 * 108.95700 * 213.23154 * 5 4 3 29 29 H 1.09004 * 108.88140 * 197.77978 * 6 5 4 30 30 H 1.08994 * 108.80368 * 79.27611 * 6 5 4 31 31 H 1.08999 * 109.46667 * 187.68542 * 8 7 6 32 32 H 1.08998 * 109.47409 * 307.68943 * 8 7 6 33 33 H 1.09000 * 109.46773 * 67.69147 * 8 7 6 34 34 H 1.08996 * 109.57448 * 334.41872 * 9 7 6 35 35 H 1.09006 * 109.57362 * 214.04114 * 9 7 6 36 36 H 0.97003 * 119.99866 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7106 2.0565 -1.2811 5 6 1.6192 3.5412 -1.0332 6 6 2.9626 4.2502 -1.2669 7 7 4.1088 3.4822 -0.7297 8 6 5.3274 4.3024 -0.7064 9 6 3.8594 2.8879 0.5643 10 6 3.3713 1.4393 0.3615 11 1 3.9667 0.9715 -0.4226 12 6 3.5658 0.6746 1.6454 13 1 2.7399 0.5498 2.3300 14 6 4.7982 0.1342 1.9460 15 7 4.9678 -0.5336 3.0662 16 14 6.2265 0.3495 0.7615 17 1 6.9662 1.5922 1.0985 18 1 7.1405 -0.8158 0.8713 19 1 5.7083 0.4429 -0.6270 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 2.5030 1.8536 -2.0015 26 1 0.7589 1.6903 -1.6663 27 1 1.3045 3.7095 -0.0033 28 1 0.8727 3.9668 -1.7038 29 1 2.9348 5.2269 -0.7836 30 1 3.1036 4.3914 -2.3384 31 1 6.1800 3.6786 -0.4380 32 1 5.4915 4.7376 -1.6921 33 1 5.2147 5.0995 0.0285 34 1 3.0944 3.4610 1.0881 35 1 4.7798 2.8847 1.1483 36 1 5.8349 -0.9134 3.2779 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250213537.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:52 Heat of formation + Delta-G solvation = -0.873929 kcal Electronic energy + Delta-G solvation = -15510.222111 eV Core-core repulsion = 13221.871289 eV Total energy + Delta-G solvation = -2288.350822 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.48344 -37.29330 -35.02446 -33.29515 -32.26875 -29.06740 -27.59026 -26.79411 -24.18006 -23.02578 -21.00272 -20.72677 -19.10195 -17.40320 -16.51581 -16.16118 -15.90727 -15.72143 -15.37504 -14.72903 -14.60439 -14.05143 -13.74139 -13.51506 -13.20650 -13.04940 -12.73702 -12.62203 -12.47745 -11.96239 -11.89264 -11.82646 -11.72029 -11.52107 -11.30479 -10.97313 -10.72628 -9.05328 -8.73418 -8.28630 -6.29554 1.28455 1.32855 1.46605 2.32961 2.95973 3.17966 3.39113 4.04206 4.19658 4.30886 4.31675 4.47602 4.52889 4.60350 4.64349 4.67355 4.75350 4.83962 4.88370 4.93586 5.01017 5.02299 5.09231 5.22431 5.31977 5.47653 5.52616 5.53498 5.64573 6.14009 6.30127 6.34938 6.56037 6.83132 7.03578 7.39082 8.87243 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.023015 B = 0.016747 C = 0.010730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.282240 B = 1671.528130 C = 2608.938593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.058 3.942 3 N -0.549 5.549 4 C 0.065 3.935 5 C -0.114 4.114 6 C 0.064 3.936 7 N -0.579 5.579 8 C 0.031 3.969 9 C 0.084 3.916 10 C 0.207 3.793 11 H -0.014 1.014 12 C -0.499 4.499 13 H 0.041 0.959 14 C 0.020 3.980 15 N -0.945 5.945 16 Si 0.929 3.071 17 H -0.266 1.266 18 H -0.291 1.291 19 H -0.252 1.252 20 H 0.049 0.951 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.013 0.987 24 H 0.060 0.940 25 H 0.027 0.973 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.098 0.902 29 H 0.037 0.963 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.028 0.972 34 H 0.034 0.966 35 H 0.043 0.957 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.729 8.446 -11.052 14.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.069 4.069 3 N -0.273 5.273 4 C -0.062 4.062 5 C -0.152 4.152 6 C -0.063 4.063 7 N -0.304 5.304 8 C -0.117 4.117 9 C -0.045 4.045 10 C 0.096 3.904 11 H 0.003 0.997 12 C -0.538 4.538 13 H 0.059 0.941 14 C -0.178 4.178 15 N -0.586 5.586 16 Si 0.754 3.246 17 H -0.191 1.191 18 H -0.218 1.218 19 H -0.176 1.176 20 H 0.068 0.932 21 H 0.084 0.916 22 H 0.083 0.917 23 H 0.031 0.969 24 H 0.078 0.922 25 H 0.045 0.955 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.117 0.883 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.046 0.954 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.761 8.246 -10.915 14.485 hybrid contribution 1.377 -0.095 0.223 1.398 sum -3.385 8.151 -10.692 13.864 Atomic orbital electron populations 1.21717 0.93624 1.01576 1.01901 1.21967 0.96216 0.89005 0.99743 1.59175 1.19720 1.16916 1.31533 1.21827 1.00152 0.94762 0.89457 1.21436 0.96507 0.94797 1.02431 1.22458 0.89420 0.94167 1.00207 1.60863 1.05351 1.36526 1.27702 1.22366 0.91650 0.95620 1.02038 1.22011 0.98324 0.95923 0.88257 1.18418 0.86350 0.92342 0.93270 0.99683 1.21255 0.96172 1.32006 1.04319 0.94100 1.25678 1.01034 0.94621 0.96441 1.70035 1.24851 1.37953 1.25728 0.86024 0.79551 0.77724 0.81260 1.19085 1.21758 1.17591 0.93203 0.91588 0.91681 0.96873 0.92171 0.95507 0.89653 0.92710 0.88326 0.94439 0.89734 0.93449 0.89399 0.95359 0.94768 0.93900 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 9.93 71.98 0.71 -3.37 16 2 C 0.06 2.39 5.41 86.30 0.47 2.85 16 3 N -0.55 -23.17 3.88 -890.68 -3.45 -26.63 16 4 C 0.06 2.16 5.16 85.40 0.44 2.60 16 5 C -0.11 -3.22 5.36 30.11 0.16 -3.06 16 6 C 0.06 1.81 5.46 86.31 0.47 2.28 16 7 N -0.58 -20.86 4.20 -921.45 -3.87 -24.73 16 8 C 0.03 0.95 9.28 127.69 1.19 2.13 16 9 C 0.08 3.67 4.37 87.15 0.38 4.05 16 10 C 0.21 10.02 1.20 45.82 0.05 10.08 16 11 H -0.01 -0.74 5.44 -2.38 -0.01 -0.75 16 12 C -0.50 -28.65 7.02 25.60 0.18 -28.47 16 13 H 0.04 2.62 7.55 -2.91 -0.02 2.60 16 14 C 0.02 1.17 5.45 84.66 0.46 1.63 16 15 N -0.95 -59.30 13.96 21.45 0.30 -59.00 16 16 Si 0.93 46.01 26.15 68.60 1.79 47.80 16 17 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 19 H -0.25 -12.25 6.01 99.48 0.60 -11.65 16 20 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 21 H 0.07 1.75 6.35 -2.39 -0.02 1.74 16 22 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.01 0.53 8.10 -2.38 -0.02 0.51 16 24 H 0.06 2.96 5.84 -2.38 -0.01 2.95 16 25 H 0.03 0.96 7.57 -2.39 -0.02 0.94 16 26 H 0.09 2.41 5.99 -2.38 -0.01 2.39 16 27 H 0.05 1.77 7.23 -2.39 -0.02 1.75 16 28 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.04 0.97 8.03 -2.39 -0.02 0.96 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.57 8.07 -2.39 -0.02 1.55 16 32 H 0.09 2.14 8.11 -2.39 -0.02 2.12 16 33 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.03 1.50 6.93 -2.39 -0.02 1.49 16 35 H 0.04 2.02 6.14 -2.38 -0.01 2.00 16 36 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -65.75 267.42 0.21 -65.54 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 0.92 Total: 6.29 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 4.52 Total: -9.28 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -7.02 Total: -110.36 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.79 Total: 47.80 kcal Total: -65.75 0.21 -65.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250213537.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.667 kcal (2) G-P(sol) polarization free energy of solvation -65.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds