Wall clock time and date at job start Mon Mar 30 2020 03:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.47540 * 2 1 4 4 C 1.48228 * 110.97921 * 295.13651 * 3 2 1 5 5 C 1.46136 * 112.12616 * 156.41778 * 4 3 2 6 6 H 1.08998 * 108.93778 * 300.31877 * 5 4 3 7 7 C 1.53000 * 108.99632 * 181.51782 * 5 4 3 8 8 C 1.54260 * 111.89843 * 60.89901 * 5 4 3 9 9 N 1.44252 * 108.64245 * 281.38935 * 8 5 4 10 10 C 1.48201 * 114.27143 * 93.39129 * 9 8 5 11 11 C 1.44254 * 111.00225 * 172.59842 * 3 2 1 12 12 H 1.09003 * 108.86625 * 96.44465 * 11 3 2 13 13 C 1.50700 * 108.86980 * 337.92612 * 11 3 2 14 14 H 1.08004 * 119.99589 * 303.91581 * 13 11 3 15 15 C 1.37870 * 120.00049 * 123.91487 * 13 11 3 16 16 N 1.31511 * 120.00075 * 8.57693 * 15 13 11 17 17 Si 1.86808 * 119.99728 * 188.57627 * 15 13 11 18 18 H 1.48494 * 109.47073 * 269.99823 * 17 15 13 19 19 H 1.48500 * 109.46914 * 149.99937 * 17 15 13 20 20 H 1.48503 * 109.47086 * 30.00192 * 17 15 13 21 21 H 1.08996 * 109.46841 * 299.99819 * 1 2 3 22 22 H 1.08998 * 109.46638 * 60.00105 * 1 2 3 23 23 H 1.08994 * 109.47116 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47305 * 240.00147 * 2 1 3 25 25 H 1.09000 * 109.47289 * 120.00271 * 2 1 3 26 26 H 1.09007 * 108.94509 * 35.76082 * 4 3 2 27 27 H 1.08994 * 108.92296 * 277.06890 * 4 3 2 28 28 H 1.08998 * 109.47137 * 297.61488 * 7 5 4 29 29 H 1.09002 * 109.46372 * 57.61193 * 7 5 4 30 30 H 1.09001 * 109.47070 * 177.61232 * 7 5 4 31 31 H 1.09002 * 109.60732 * 161.64324 * 8 5 4 32 32 H 1.09004 * 109.60986 * 41.14037 * 8 5 4 33 33 H 1.00896 * 111.00022 * 326.94289 * 9 8 5 34 34 H 1.09001 * 108.82181 * 197.28513 * 10 9 8 35 35 H 1.08998 * 108.73303 * 78.92740 * 10 9 8 36 36 H 0.96995 * 120.00090 * 355.62665 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6424 2.0813 -1.2530 5 6 1.6042 3.5326 -1.0860 6 1 0.8744 3.7809 -0.3155 7 6 1.1722 4.1745 -2.4060 8 6 2.9788 4.1011 -0.6775 9 7 3.1749 3.8652 0.7320 10 6 3.9035 2.6130 1.0445 11 6 3.4512 1.4271 0.1735 12 1 3.9227 1.5090 -0.8059 13 6 3.9013 0.1447 0.8245 14 1 3.4742 -0.1605 1.7684 15 6 4.8582 -0.6389 0.2153 16 7 5.4994 -0.1909 -0.8419 17 14 5.2438 -2.3370 0.8915 18 1 6.3280 -2.2334 1.9009 19 1 5.6822 -3.2232 -0.2165 20 1 4.0278 -2.9044 1.5276 21 1 -0.3633 0.5138 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 0.6577 1.7353 -1.5673 27 1 2.3681 1.8332 -2.0275 28 1 1.9077 3.9482 -3.1779 29 1 0.2010 3.7779 -2.7020 30 1 1.1001 5.2546 -2.2782 31 1 3.0052 5.1726 -0.8762 32 1 3.7644 3.6020 -1.2448 33 1 2.2991 3.9080 1.2311 34 1 3.7390 2.3625 2.0925 35 1 4.9691 2.7792 0.8863 36 1 5.2555 0.6634 -1.2311 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250218722.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:33 Heat of formation + Delta-G solvation = -17.288598 kcal Electronic energy + Delta-G solvation = -15510.483135 eV Core-core repulsion = 13221.420520 eV Total energy + Delta-G solvation = -2289.062615 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.67067 -36.81372 -35.55403 -34.01813 -31.50994 -29.10011 -27.33333 -26.06039 -25.12919 -22.60092 -21.54244 -21.12098 -18.74248 -17.15261 -16.74766 -16.51593 -15.91515 -15.62098 -15.17298 -14.68148 -14.27043 -14.04029 -13.72498 -13.41180 -13.08829 -13.03809 -12.67567 -12.59030 -12.46013 -12.15478 -12.02986 -11.93784 -11.64717 -11.50796 -11.35995 -10.73790 -10.48615 -9.32260 -8.88310 -8.66769 -6.35080 1.48444 1.56065 1.73137 2.50058 3.00000 3.28135 3.61639 3.71520 4.07519 4.21069 4.35202 4.38233 4.48716 4.56883 4.65752 4.67433 4.75912 4.80080 4.84683 4.94639 5.02509 5.10997 5.17363 5.24475 5.25365 5.35199 5.47218 5.48698 5.72210 6.02931 6.24832 6.43335 6.57110 6.64285 6.77338 7.42093 8.69120 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032707 B = 0.011499 C = 0.009913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.868957 B = 2434.508816 C = 2823.983575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.073 3.927 3 N -0.526 5.526 4 C 0.055 3.945 5 C -0.112 4.112 6 H 0.082 0.918 7 C -0.135 4.135 8 C 0.079 3.921 9 N -0.694 5.694 10 C 0.098 3.902 11 C 0.161 3.839 12 H -0.014 1.014 13 C -0.594 4.594 14 H 0.052 0.948 15 C -0.026 4.026 16 N -0.939 5.939 17 Si 1.110 2.890 18 H -0.274 1.274 19 H -0.288 1.288 20 H -0.266 1.266 21 H 0.062 0.938 22 H 0.054 0.946 23 H 0.066 0.934 24 H -0.011 1.011 25 H 0.072 0.928 26 H 0.078 0.922 27 H -0.008 1.008 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.027 0.973 33 H 0.346 0.654 34 H 0.054 0.946 35 H 0.028 0.972 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.967 4.765 -0.111 11.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.054 4.054 3 N -0.250 5.250 4 C -0.072 4.072 5 C -0.132 4.132 6 H 0.100 0.900 7 C -0.193 4.193 8 C -0.052 4.052 9 N -0.323 5.323 10 C -0.032 4.032 11 C 0.051 3.949 12 H 0.004 0.996 13 C -0.633 4.633 14 H 0.071 0.929 15 C -0.225 4.225 16 N -0.578 5.578 17 Si 0.932 3.068 18 H -0.199 1.199 19 H -0.214 1.214 20 H -0.190 1.190 21 H 0.081 0.919 22 H 0.073 0.927 23 H 0.085 0.915 24 H 0.008 0.992 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.010 0.990 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.046 0.954 33 H 0.165 0.835 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.632 4.081 0.111 9.549 hybrid contribution -0.661 0.093 -0.944 1.156 sum -9.293 4.174 -0.833 10.221 Atomic orbital electron populations 1.21830 0.93884 1.01799 1.01897 1.21817 0.94684 0.89324 0.99625 1.61947 1.14043 1.15580 1.33429 1.21272 0.99645 0.95890 0.90420 1.20828 0.98438 0.94057 0.99907 0.89961 1.21747 1.01072 1.01389 0.95140 1.21766 0.94827 1.00165 0.88403 1.59522 1.27489 1.35516 1.09734 1.22198 0.95356 0.86862 0.98818 1.19768 0.85526 0.95174 0.94445 0.99600 1.22168 1.25771 1.06942 1.08434 0.92940 1.27205 0.92971 1.06984 0.95342 1.70950 1.39862 1.22355 1.24599 0.83030 0.77102 0.71181 0.75492 1.19936 1.21372 1.19020 0.91908 0.92739 0.91478 0.99237 0.90951 0.90421 0.99010 0.93748 0.91723 0.90474 0.89422 0.95386 0.83495 0.92728 0.95323 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.29 9.87 71.98 0.71 -3.57 16 2 C 0.07 3.10 4.75 86.30 0.41 3.51 16 3 N -0.53 -22.51 4.40 -889.20 -3.92 -26.43 16 4 C 0.06 2.07 4.04 83.94 0.34 2.41 16 5 C -0.11 -3.43 2.50 -12.48 -0.03 -3.46 16 6 H 0.08 2.39 7.62 -2.39 -0.02 2.37 16 7 C -0.13 -3.23 9.00 71.98 0.65 -2.58 16 8 C 0.08 2.71 5.63 87.22 0.49 3.20 16 9 N -0.69 -26.00 6.59 -512.83 -3.38 -29.38 16 10 C 0.10 4.48 6.14 86.37 0.53 5.01 16 11 C 0.16 8.03 2.00 44.98 0.09 8.12 16 12 H -0.01 -0.79 4.12 -2.39 -0.01 -0.79 16 13 C -0.59 -32.33 5.76 25.60 0.15 -32.18 16 14 H 0.05 2.86 7.04 -2.91 -0.02 2.84 16 15 C -0.03 -1.49 5.45 84.65 0.46 -1.02 16 16 N -0.94 -57.69 13.64 21.44 0.29 -57.40 16 17 Si 1.11 49.91 29.91 68.60 2.05 51.96 16 18 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 19 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 21 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 22 H 0.05 1.57 6.17 -2.39 -0.01 1.56 16 23 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 24 H -0.01 -0.52 8.13 -2.38 -0.02 -0.54 16 25 H 0.07 3.34 5.80 -2.39 -0.01 3.33 16 26 H 0.08 2.59 5.72 -2.38 -0.01 2.58 16 27 H -0.01 -0.37 7.37 -2.39 -0.02 -0.39 16 28 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 1.52 8.13 -2.39 -0.02 1.50 16 31 H 0.09 2.57 8.00 -2.39 -0.02 2.55 16 32 H 0.03 1.14 6.96 -2.38 -0.02 1.13 16 33 H 0.35 11.94 8.08 -89.70 -0.72 11.22 16 34 H 0.05 2.51 7.97 -2.39 -0.02 2.49 16 35 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.25 15.99 6.31 -92.71 -0.58 15.40 16 Total: -1.00 -61.93 269.15 -0.64 -62.57 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.51 Total: 19.24 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 3.80 Total: -20.57 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -7.00 Total: -113.20 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 2.05 Total: 51.96 kcal Total: -61.93 -0.64 -62.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250218722.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.277 kcal (2) G-P(sol) polarization free energy of solvation -61.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds