Wall clock time and date at job start Mon Mar 30 2020 03:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.46687 * 2 1 4 4 C 1.48059 * 111.00163 * 61.87973 * 3 2 1 5 5 C 1.53702 * 112.39387 * 192.24189 * 4 3 2 6 6 H 1.09007 * 108.95347 * 79.18089 * 5 4 3 7 7 C 1.52996 * 108.96188 * 197.83185 * 5 4 3 8 8 C 1.50733 * 112.14094 * 318.41339 * 5 4 3 9 9 N 1.47914 * 108.42019 * 92.66149 * 8 5 4 10 10 C 1.40007 * 114.06573 * 280.09604 * 9 8 5 11 11 C 1.44580 * 111.00098 * 294.18272 * 3 2 1 12 12 H 1.09001 * 109.56730 * 100.41815 * 11 3 2 13 13 C 1.50696 * 109.57089 * 340.16757 * 11 3 2 14 14 H 1.07999 * 120.00362 * 305.26357 * 13 11 3 15 15 C 1.37886 * 119.99963 * 125.26923 * 13 11 3 16 16 N 1.31513 * 119.99655 * 359.97438 * 15 13 11 17 17 Si 1.86795 * 120.00019 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47140 * 60.00090 * 17 15 13 19 19 H 1.48503 * 109.47119 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47470 * 300.00087 * 17 15 13 21 21 H 1.08996 * 109.47156 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47417 * 300.00436 * 1 2 3 23 23 H 1.09003 * 109.46797 * 60.00440 * 1 2 3 24 24 H 1.09000 * 109.47043 * 239.99956 * 2 1 3 25 25 H 1.08994 * 109.46598 * 119.99489 * 2 1 3 26 26 H 1.08990 * 108.88771 * 312.96782 * 4 3 2 27 27 H 1.09006 * 108.88006 * 71.52785 * 4 3 2 28 28 H 1.09004 * 109.46819 * 60.00165 * 7 5 4 29 29 H 1.08997 * 109.47167 * 180.02562 * 7 5 4 30 30 H 1.09002 * 109.46971 * 300.00316 * 7 5 4 31 31 H 1.09002 * 109.65916 * 332.99872 * 8 5 4 32 32 H 1.08994 * 109.85403 * 212.44667 * 8 5 4 33 33 H 1.00898 * 110.99336 * 46.38300 * 9 8 5 34 34 H 1.09001 * 108.95886 * 301.13339 * 10 9 8 35 35 H 1.09004 * 108.96106 * 182.48124 * 10 9 8 36 36 H 0.97003 * 119.99897 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5822 2.1025 1.2191 5 6 1.8119 3.6190 1.1202 6 1 1.0147 4.0596 0.5214 7 6 1.7655 4.2215 2.5258 8 6 3.1403 3.9525 0.4908 9 7 2.9373 4.1281 -0.9638 10 6 2.8634 2.9268 -1.6791 11 6 1.6710 2.0579 -1.2313 12 1 0.7976 2.6892 -1.0677 13 6 1.3631 1.0360 -2.2952 14 1 2.0861 0.2699 -2.5336 15 6 0.1584 1.0791 -2.9646 16 7 -0.7222 2.0117 -2.6741 17 14 -0.2229 -0.1871 -4.2839 18 1 -0.1919 -1.5472 -3.6884 19 1 -1.5717 0.0755 -4.8469 20 1 0.7914 -0.0968 -5.3647 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.8932 -0.5137 0.8900 26 1 0.5199 1.9161 1.3761 27 1 2.1377 1.7166 2.0739 28 1 2.5449 3.7707 3.1402 29 1 1.9272 5.2977 2.4652 30 1 0.7911 4.0254 2.9732 31 1 3.8440 3.1389 0.6666 32 1 3.5321 4.8747 0.9198 33 1 2.1336 4.7094 -1.1491 34 1 3.7863 2.3670 -1.5275 35 1 2.7584 3.1524 -2.7404 36 1 -1.5695 2.0423 -3.1452 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250218725.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:36 Heat of formation + Delta-G solvation = -8.748531 kcal Electronic energy + Delta-G solvation = -15665.155435 eV Core-core repulsion = 13376.463145 eV Total energy + Delta-G solvation = -2288.692290 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.51983 -36.91844 -35.27430 -33.93626 -30.89772 -29.23685 -27.17584 -26.11450 -24.89235 -22.96661 -21.76056 -20.03261 -18.19889 -17.43298 -16.63568 -16.39032 -16.01646 -15.47390 -14.86566 -14.37737 -14.10228 -13.85538 -13.77047 -13.46236 -12.98363 -12.82397 -12.76641 -12.51896 -12.36260 -12.13306 -12.00189 -11.72869 -11.63846 -11.41736 -11.16290 -10.88188 -10.44943 -9.14042 -8.49906 -8.13857 -6.18934 1.39037 1.40680 1.46674 2.39937 3.10542 3.50257 3.73209 3.94589 4.09806 4.31525 4.51894 4.63541 4.68110 4.70578 4.78215 4.88736 4.89636 4.97806 5.03658 5.06944 5.14246 5.20852 5.24261 5.39735 5.47112 5.60862 5.64959 5.72812 5.91595 6.03008 6.53248 6.61846 6.72853 6.99821 7.05983 7.45630 8.91808 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037817 B = 0.011651 C = 0.010371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.236252 B = 2402.607322 C = 2699.225541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.084 3.916 3 N -0.553 5.553 4 C 0.064 3.936 5 C -0.120 4.120 6 H 0.039 0.961 7 C -0.131 4.131 8 C 0.084 3.916 9 N -0.699 5.699 10 C 0.097 3.903 11 C 0.171 3.829 12 H 0.018 0.982 13 C -0.509 4.509 14 H 0.051 0.949 15 C 0.030 3.970 16 N -0.920 5.920 17 Si 0.937 3.063 18 H -0.271 1.271 19 H -0.288 1.288 20 H -0.272 1.272 21 H 0.043 0.957 22 H 0.032 0.968 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.011 0.989 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.333 0.667 34 H 0.047 0.953 35 H 0.041 0.959 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.722 1.603 7.537 8.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.044 4.044 3 N -0.277 5.277 4 C -0.063 4.063 5 C -0.140 4.140 6 H 0.057 0.943 7 C -0.190 4.190 8 C -0.045 4.045 9 N -0.327 5.327 10 C -0.036 4.036 11 C 0.062 3.938 12 H 0.036 0.964 13 C -0.549 4.549 14 H 0.069 0.931 15 C -0.169 4.169 16 N -0.560 5.560 17 Si 0.763 3.237 18 H -0.196 1.196 19 H -0.214 1.214 20 H -0.197 1.197 21 H 0.062 0.938 22 H 0.051 0.949 23 H 0.097 0.903 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.029 0.971 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.151 0.849 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.716 1.716 7.369 8.915 hybrid contribution -2.476 -1.048 -0.772 2.797 sum 2.240 0.668 6.597 6.999 Atomic orbital electron populations 1.22550 0.99492 1.00469 1.02403 1.21675 0.92319 0.90433 1.00002 1.61382 1.61125 1.02653 1.02540 1.22414 0.96987 0.93669 0.93248 1.21663 0.98701 0.94784 0.98872 0.94268 1.21753 1.01971 1.01013 0.94225 1.21758 0.95439 1.01284 0.86012 1.58300 1.46474 1.18014 1.09903 1.20836 0.97703 0.89298 0.95717 1.19928 0.93333 0.93893 0.86689 0.96418 1.21213 1.00942 1.13438 1.19278 0.93086 1.25448 0.96176 0.96979 0.98301 1.69999 1.08373 1.34651 1.42967 0.85927 0.77144 0.80336 0.80266 1.19587 1.21414 1.19696 0.93834 0.94899 0.90344 0.91507 0.92590 0.97095 0.91060 0.91245 0.91162 0.93160 0.91504 0.89375 0.84865 0.93432 0.94036 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -8.38 9.19 71.98 0.66 -7.72 16 2 C 0.08 3.53 5.56 86.30 0.48 4.01 16 3 N -0.55 -23.68 4.12 -874.13 -3.60 -27.28 16 4 C 0.06 2.40 4.73 86.32 0.41 2.81 16 5 C -0.12 -3.94 2.23 -11.29 -0.03 -3.97 16 6 H 0.04 1.51 6.79 -2.38 -0.02 1.49 16 7 C -0.13 -3.20 8.85 71.98 0.64 -2.57 16 8 C 0.08 2.71 5.78 85.37 0.49 3.20 16 9 N -0.70 -26.59 6.46 -528.39 -3.41 -30.00 16 10 C 0.10 4.30 5.51 87.95 0.48 4.78 16 11 C 0.17 8.21 1.71 45.01 0.08 8.29 16 12 H 0.02 0.98 5.72 -2.39 -0.01 0.97 16 13 C -0.51 -26.52 5.26 25.60 0.13 -26.39 16 14 H 0.05 2.70 6.90 -2.91 -0.02 2.68 16 15 C 0.03 1.60 3.88 84.66 0.33 1.92 16 16 N -0.92 -51.44 11.96 21.45 0.26 -51.18 16 17 Si 0.94 42.57 29.54 68.60 2.03 44.60 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 21 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.03 1.38 6.18 -2.39 -0.01 1.36 16 23 H 0.08 4.02 4.06 -2.39 -0.01 4.01 16 24 H 0.07 3.03 5.92 -2.39 -0.01 3.02 16 25 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.01 0.44 5.78 -2.39 -0.01 0.43 16 27 H 0.07 2.36 7.95 -2.38 -0.02 2.34 16 28 H 0.07 1.49 8.11 -2.38 -0.02 1.47 16 29 H 0.07 1.49 8.02 -2.39 -0.02 1.47 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 2.30 7.57 -2.39 -0.02 2.28 16 32 H 0.09 2.38 7.67 -2.39 -0.02 2.36 16 33 H 0.33 12.82 8.21 -89.70 -0.74 12.08 16 34 H 0.05 2.13 8.07 -2.39 -0.02 2.11 16 35 H 0.04 1.98 7.98 -2.38 -0.02 1.96 16 36 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -55.53 263.77 -0.73 -56.26 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.32 Total: 23.23 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 3.68 Total: -15.62 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -6.75 Total: -108.46 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -55.53 -0.73 -56.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250218725.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.508 kcal (2) G-P(sol) polarization free energy of solvation -55.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds