Wall clock time and date at job start Mon Mar 30 2020 03:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46899 * 109.47648 * 2 1 4 4 C 1.40085 * 110.99624 * 297.40341 * 3 2 1 5 5 C 1.54516 * 111.50827 * 188.14859 * 4 3 2 6 6 H 1.09000 * 109.64778 * 43.88675 * 5 4 3 7 7 C 1.53000 * 109.55797 * 164.15511 * 5 4 3 8 8 C 1.50742 * 108.94055 * 283.98936 * 5 4 3 9 9 N 1.48067 * 112.93718 * 92.65189 * 8 5 4 10 10 C 1.47749 * 113.78974 * 318.28859 * 9 8 5 11 11 H 1.08999 * 108.92776 * 79.45122 * 10 9 8 12 12 C 1.50701 * 108.99308 * 198.24933 * 10 9 8 13 13 H 1.07994 * 120.00066 * 122.39555 * 12 10 9 14 14 C 1.37879 * 119.99618 * 302.39082 * 12 10 9 15 15 N 1.31514 * 120.00350 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99904 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47179 * 90.00153 * 16 14 12 18 18 H 1.48503 * 109.47197 * 210.00504 * 16 14 12 19 19 H 1.48500 * 109.46972 * 330.00232 * 16 14 12 20 20 C 1.47683 * 111.00005 * 66.04151 * 3 2 1 21 21 H 1.09001 * 109.46711 * 300.00757 * 1 2 3 22 22 H 1.09005 * 109.46991 * 59.99471 * 1 2 3 23 23 H 1.08990 * 109.47703 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47136 * 239.99537 * 2 1 3 25 25 H 1.09009 * 109.47018 * 119.99782 * 2 1 3 26 26 H 1.08997 * 109.07368 * 67.62349 * 4 3 2 27 27 H 1.09000 * 109.01657 * 308.63231 * 4 3 2 28 28 H 1.09002 * 109.46888 * 179.45628 * 7 5 4 29 29 H 1.08999 * 109.47705 * 299.45337 * 7 5 4 30 30 H 1.09000 * 109.47616 * 59.45906 * 7 5 4 31 31 H 1.09002 * 108.78966 * 331.76707 * 8 5 4 32 32 H 1.08998 * 108.79177 * 213.54413 * 8 5 4 33 33 H 1.00903 * 111.00109 * 192.21941 * 9 8 5 34 34 H 0.96995 * 120.00490 * 179.97438 * 15 14 12 35 35 H 1.08991 * 109.73645 * 32.34204 * 20 3 2 36 36 H 1.08995 * 109.73913 * 271.63419 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6196 2.0588 -1.1611 5 6 2.2926 3.4454 -1.2717 6 1 3.3488 3.3615 -1.0161 7 6 2.1519 3.9703 -2.7020 8 6 1.6159 4.3953 -0.3167 9 7 2.2793 4.4541 1.0057 10 6 2.7044 3.1352 1.5184 11 1 3.6361 2.8496 1.0300 12 6 2.9410 3.2391 3.0030 13 1 2.3968 2.6002 3.6826 14 6 3.8525 4.1500 3.4937 15 7 4.5150 4.9284 2.6662 16 14 4.1463 4.2784 5.3340 17 1 5.2368 3.3501 5.7271 18 1 4.5332 5.6703 5.6776 19 1 2.9026 3.9167 6.0603 20 6 1.6684 2.0706 1.2600 21 1 -0.3633 0.5140 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0275 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 0.5375 2.1886 -1.1426 27 1 1.8916 1.4605 -2.0306 28 1 2.6186 4.9525 -2.7760 29 1 2.6416 3.2825 -3.3914 30 1 1.0953 4.0499 -2.9576 31 1 0.5829 4.0764 -0.1773 32 1 1.6168 5.3934 -0.7547 33 1 1.7016 4.9347 1.6790 34 1 5.1559 5.5694 3.0114 35 1 1.6649 1.3534 2.0807 36 1 0.6842 2.5296 1.1672 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250231953.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:44 Heat of formation + Delta-G solvation = 7.601621 kcal Electronic energy + Delta-G solvation = -15271.209335 eV Core-core repulsion = 12983.226040 eV Total energy + Delta-G solvation = -2287.983295 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.11891 -35.06722 -33.73312 -31.41801 -29.91273 -27.81647 -25.52874 -24.56061 -23.63217 -21.48457 -19.57590 -18.75148 -16.44066 -15.37258 -14.87230 -14.72550 -14.35914 -14.00343 -13.39644 -13.34648 -12.89405 -12.27219 -12.09706 -12.00159 -11.62406 -11.31068 -11.09435 -11.02229 -10.73263 -10.63235 -10.49023 -10.35829 -9.93950 -9.82566 -9.51599 -8.88570 -8.35318 -7.57773 -6.57010 -5.82830 -3.97295 3.36055 3.43247 3.45138 4.45793 4.62098 5.20808 5.31942 5.34356 5.43382 5.52267 5.60575 5.65499 5.88550 5.96695 6.00181 6.03920 6.10714 6.21435 6.28613 6.32156 6.38329 6.45309 6.51509 6.66923 6.78241 6.99383 7.08399 7.60572 7.90990 7.94438 8.08466 8.35120 8.73957 9.14708 9.22515 9.70222 11.20611 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032237 B = 0.010449 C = 0.008436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.365001 B = 2679.141473 C = 3318.198771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 N -0.551 5.551 4 C 0.084 3.916 5 C -0.093 4.093 6 H 0.093 0.907 7 C -0.136 4.136 8 C 0.067 3.933 9 N -0.664 5.664 10 C 0.223 3.777 11 H 0.051 0.949 12 C -0.544 4.544 13 H 0.052 0.948 14 C 0.081 3.919 15 N -0.844 5.844 16 Si 0.881 3.119 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.051 3.949 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.010 0.990 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.045 0.955 31 H -0.002 1.002 32 H 0.049 0.951 33 H 0.329 0.671 34 H 0.255 0.745 35 H 0.067 0.933 36 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.287 -5.011 -7.035 10.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.072 4.072 3 N -0.274 5.274 4 C -0.046 4.046 5 C -0.112 4.112 6 H 0.111 0.889 7 C -0.195 4.195 8 C -0.063 4.063 9 N -0.295 5.295 10 C 0.116 3.884 11 H 0.069 0.931 12 C -0.583 4.583 13 H 0.070 0.930 14 C -0.126 4.126 15 N -0.478 5.478 16 Si 0.708 3.292 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.077 4.077 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.028 0.972 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.016 0.984 32 H 0.067 0.933 33 H 0.146 0.854 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -5.067 -4.730 -7.359 10.109 hybrid contribution -1.646 -0.207 1.295 2.104 sum -6.713 -4.937 -6.065 10.306 Atomic orbital electron populations 1.22425 0.99120 1.01395 1.01850 1.22122 0.92134 0.90913 1.02014 1.59295 1.62798 1.02100 1.03197 1.21021 0.95911 0.95146 0.92517 1.21063 1.02540 0.93426 0.94162 0.88911 1.21752 1.00693 1.00851 0.96167 1.21681 0.93960 0.97486 0.93170 1.60751 1.44969 1.22753 1.01049 1.18912 0.92806 0.82260 0.94449 0.93106 1.21149 1.24310 1.21652 0.91235 0.92954 1.24995 0.95380 0.95462 0.96757 1.70140 1.23876 1.20625 1.33197 0.86816 0.78427 0.77141 0.86783 1.20790 1.21341 1.20154 1.22762 0.98122 0.98280 0.88509 0.92664 0.92953 0.92782 0.91714 0.90941 0.97189 0.92397 0.92491 0.93158 0.93594 0.98447 0.93266 0.85356 0.93458 0.91468 0.96391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.61 9.37 37.16 0.35 -2.26 16 2 C 0.06 0.87 5.89 -3.83 -0.02 0.85 16 3 N -0.55 -10.41 4.16 -239.70 -1.00 -11.41 16 4 C 0.08 1.45 3.85 -6.55 -0.03 1.42 16 5 C -0.09 -1.71 2.47 -90.96 -0.22 -1.93 16 6 H 0.09 2.02 7.19 -51.93 -0.37 1.64 16 7 C -0.14 -2.00 8.92 37.16 0.33 -1.67 16 8 C 0.07 1.34 5.56 -4.31 -0.02 1.32 16 9 N -0.66 -16.04 5.86 -108.88 -0.64 -16.67 16 10 C 0.22 5.61 2.04 -69.51 -0.14 5.47 16 11 H 0.05 1.47 7.19 -51.93 -0.37 1.09 16 12 C -0.54 -14.89 8.33 -34.44 -0.29 -15.18 16 13 H 0.05 1.41 7.43 -52.49 -0.39 1.02 16 14 C 0.08 2.24 5.37 -17.82 -0.10 2.15 16 15 N -0.84 -24.49 12.64 55.43 0.70 -23.79 16 16 Si 0.88 21.17 29.54 -169.99 -5.02 16.15 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.05 1.09 3.85 -4.50 -0.02 1.07 16 21 H 0.05 0.83 7.27 -51.93 -0.38 0.45 16 22 H 0.05 0.72 6.63 -51.93 -0.34 0.37 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.90 8.01 -51.93 -0.42 0.49 16 25 H 0.07 1.12 7.92 -51.92 -0.41 0.71 16 26 H 0.01 0.18 6.08 -51.93 -0.32 -0.14 16 27 H 0.06 0.91 7.83 -51.93 -0.41 0.50 16 28 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.00 -0.05 6.52 -51.93 -0.34 -0.39 16 32 H 0.05 0.95 7.68 -51.93 -0.40 0.55 16 33 H 0.33 8.13 8.51 -39.29 -0.33 7.79 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.07 1.46 7.04 -51.93 -0.37 1.09 16 36 H 0.02 0.38 6.61 -51.93 -0.34 0.04 16 LS Contribution 271.89 15.07 4.10 4.10 Total: -1.00 -28.35 271.89 -8.03 -36.38 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.01 Total: 4.00 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -0.16 Total: -8.76 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.93 Total: -51.87 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.35 -8.03 -36.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250231953.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.981 kcal (2) G-P(sol) polarization free energy of solvation -28.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds