Wall clock time and date at job start Mon Mar 30 2020 03:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46899 * 109.47648 * 2 1 4 4 C 1.40085 * 110.99624 * 297.40341 * 3 2 1 5 5 C 1.54516 * 111.50827 * 188.14859 * 4 3 2 6 6 H 1.09000 * 109.64778 * 43.88675 * 5 4 3 7 7 C 1.53000 * 109.55797 * 164.15511 * 5 4 3 8 8 C 1.50742 * 108.94055 * 283.98936 * 5 4 3 9 9 N 1.48067 * 112.93718 * 92.65189 * 8 5 4 10 10 C 1.47749 * 113.78974 * 318.28859 * 9 8 5 11 11 H 1.08999 * 108.92776 * 79.45122 * 10 9 8 12 12 C 1.50701 * 108.99308 * 198.24933 * 10 9 8 13 13 H 1.07994 * 120.00066 * 122.39555 * 12 10 9 14 14 C 1.37879 * 119.99618 * 302.39082 * 12 10 9 15 15 N 1.31514 * 120.00350 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99904 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47179 * 90.00153 * 16 14 12 18 18 H 1.48503 * 109.47197 * 210.00504 * 16 14 12 19 19 H 1.48500 * 109.46972 * 330.00232 * 16 14 12 20 20 C 1.47683 * 111.00005 * 66.04151 * 3 2 1 21 21 H 1.09001 * 109.46711 * 300.00757 * 1 2 3 22 22 H 1.09005 * 109.46991 * 59.99471 * 1 2 3 23 23 H 1.08990 * 109.47703 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47136 * 239.99537 * 2 1 3 25 25 H 1.09009 * 109.47018 * 119.99782 * 2 1 3 26 26 H 1.08997 * 109.07368 * 67.62349 * 4 3 2 27 27 H 1.09000 * 109.01657 * 308.63231 * 4 3 2 28 28 H 1.09002 * 109.46888 * 179.45628 * 7 5 4 29 29 H 1.08999 * 109.47705 * 299.45337 * 7 5 4 30 30 H 1.09000 * 109.47616 * 59.45906 * 7 5 4 31 31 H 1.09002 * 108.78966 * 331.76707 * 8 5 4 32 32 H 1.08998 * 108.79177 * 213.54413 * 8 5 4 33 33 H 1.00903 * 111.00109 * 192.21941 * 9 8 5 34 34 H 0.96995 * 120.00490 * 179.97438 * 15 14 12 35 35 H 1.08991 * 109.73645 * 32.34204 * 20 3 2 36 36 H 1.08995 * 109.73913 * 271.63419 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6196 2.0588 -1.1611 5 6 2.2926 3.4454 -1.2717 6 1 3.3488 3.3615 -1.0161 7 6 2.1519 3.9703 -2.7020 8 6 1.6159 4.3953 -0.3167 9 7 2.2793 4.4541 1.0057 10 6 2.7044 3.1352 1.5184 11 1 3.6361 2.8496 1.0300 12 6 2.9410 3.2391 3.0030 13 1 2.3968 2.6002 3.6826 14 6 3.8525 4.1500 3.4937 15 7 4.5150 4.9284 2.6662 16 14 4.1463 4.2784 5.3340 17 1 5.2368 3.3501 5.7271 18 1 4.5332 5.6703 5.6776 19 1 2.9026 3.9167 6.0603 20 6 1.6684 2.0706 1.2600 21 1 -0.3633 0.5140 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0275 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 0.5375 2.1886 -1.1426 27 1 1.8916 1.4605 -2.0306 28 1 2.6186 4.9525 -2.7760 29 1 2.6416 3.2825 -3.3914 30 1 1.0953 4.0499 -2.9576 31 1 0.5829 4.0764 -0.1773 32 1 1.6168 5.3934 -0.7547 33 1 1.7016 4.9347 1.6790 34 1 5.1559 5.5694 3.0114 35 1 1.6649 1.3534 2.0807 36 1 0.6842 2.5296 1.1672 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250231953.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:43 Heat of formation + Delta-G solvation = -12.432376 kcal Electronic energy + Delta-G solvation = -15272.078074 eV Core-core repulsion = 12983.226040 eV Total energy + Delta-G solvation = -2288.852034 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.65662 -36.65598 -35.47467 -33.38122 -31.27576 -29.44623 -27.26923 -25.97409 -25.39645 -23.00638 -21.10350 -20.47632 -18.43543 -16.98843 -16.38892 -16.29215 -16.20339 -15.74749 -14.89120 -14.68096 -14.26441 -13.93989 -13.66631 -13.44365 -13.05259 -12.84814 -12.82227 -12.68769 -12.35932 -12.31327 -11.98117 -11.78982 -11.70516 -11.40988 -11.24535 -10.85893 -10.48731 -9.05283 -8.41929 -7.95634 -6.17108 1.44600 1.45606 1.54820 2.47640 3.15765 3.23656 3.79835 3.92246 4.09744 4.13946 4.28457 4.36237 4.51974 4.52863 4.63470 4.68628 4.80921 4.83139 4.86623 4.97200 5.01320 5.02952 5.13709 5.25575 5.29553 5.37829 5.54688 5.68990 5.80556 6.23327 6.34465 6.59877 6.75982 7.17183 7.24910 7.54941 9.07459 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032237 B = 0.010449 C = 0.008436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.365001 B = 2679.141473 C = 3318.198771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.054 3.946 3 N -0.569 5.569 4 C 0.086 3.914 5 C -0.092 4.092 6 H 0.051 0.949 7 C -0.127 4.127 8 C 0.068 3.932 9 N -0.683 5.683 10 C 0.232 3.768 11 H 0.006 0.994 12 C -0.562 4.562 13 H 0.050 0.950 14 C 0.034 3.966 15 N -0.877 5.877 16 Si 0.948 3.052 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.269 1.269 20 C 0.069 3.931 21 H 0.038 0.962 22 H 0.056 0.944 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.018 0.982 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.005 0.995 32 H 0.056 0.944 33 H 0.321 0.679 34 H 0.255 0.745 35 H 0.059 0.941 36 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.432 -5.881 -7.763 12.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.073 4.073 3 N -0.292 5.292 4 C -0.043 4.043 5 C -0.111 4.111 6 H 0.070 0.930 7 C -0.185 4.185 8 C -0.061 4.061 9 N -0.314 5.314 10 C 0.125 3.875 11 H 0.024 0.976 12 C -0.601 4.601 13 H 0.069 0.931 14 C -0.170 4.170 15 N -0.513 5.513 16 Si 0.774 3.226 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.194 1.194 20 C -0.060 4.060 21 H 0.057 0.943 22 H 0.075 0.925 23 H 0.097 0.903 24 H 0.105 0.895 25 H 0.085 0.915 26 H 0.036 0.964 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.023 0.977 32 H 0.075 0.925 33 H 0.138 0.862 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -6.223 -5.620 -8.099 11.657 hybrid contribution -1.278 0.037 1.478 1.954 sum -7.501 -5.583 -6.621 11.457 Atomic orbital electron populations 1.22328 0.97484 1.02883 1.01196 1.22221 0.93490 0.88755 1.02884 1.59199 1.63819 1.03671 1.02537 1.21048 0.96075 0.94614 0.92559 1.21065 0.99786 0.94249 0.96047 0.93026 1.21673 1.02229 1.00970 0.93655 1.21769 0.94128 0.98616 0.91538 1.60530 1.45923 1.22430 1.02500 1.18616 0.92177 0.83842 0.92895 0.97620 1.21519 1.24379 1.21544 0.92636 0.93131 1.25715 0.95116 0.95112 1.01072 1.70281 1.24529 1.21315 1.35147 0.85751 0.78371 0.77028 0.81474 1.20510 1.21080 1.19405 1.22342 0.96586 0.97088 0.89937 0.94320 0.92504 0.90256 0.89546 0.91459 0.96399 0.89992 0.92691 0.91363 0.91632 0.97675 0.92523 0.86165 0.93601 0.92262 0.96497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.49 9.37 71.98 0.67 -3.82 16 2 C 0.05 1.55 5.89 86.30 0.51 2.06 16 3 N -0.57 -21.04 4.16 -912.27 -3.79 -24.83 16 4 C 0.09 2.82 3.85 88.05 0.34 3.16 16 5 C -0.09 -3.32 2.47 -11.01 -0.03 -3.35 16 6 H 0.05 2.30 7.19 -2.39 -0.02 2.28 16 7 C -0.13 -3.42 8.92 71.98 0.64 -2.78 16 8 C 0.07 2.74 5.56 85.35 0.47 3.21 16 9 N -0.68 -33.83 5.86 -498.37 -2.92 -36.75 16 10 C 0.23 12.05 2.04 43.29 0.09 12.14 16 11 H 0.01 0.36 7.19 -2.39 -0.02 0.34 16 12 C -0.56 -31.43 8.33 25.60 0.21 -31.21 16 13 H 0.05 2.77 7.43 -2.91 -0.02 2.75 16 14 C 0.03 1.90 5.37 84.66 0.45 2.36 16 15 N -0.88 -52.18 12.64 21.45 0.27 -51.90 16 16 Si 0.95 44.04 29.54 68.60 2.03 46.06 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 C 0.07 2.98 3.85 85.43 0.33 3.30 16 21 H 0.04 1.08 7.27 -2.39 -0.02 1.07 16 22 H 0.06 1.37 6.63 -2.38 -0.02 1.35 16 23 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.09 2.14 8.01 -2.39 -0.02 2.12 16 25 H 0.07 2.00 7.92 -2.38 -0.02 1.98 16 26 H 0.02 0.57 6.08 -2.39 -0.01 0.56 16 27 H 0.08 2.30 7.83 -2.39 -0.02 2.29 16 28 H 0.05 1.49 8.09 -2.39 -0.02 1.47 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.01 0.20 6.52 -2.39 -0.02 0.18 16 32 H 0.06 2.15 7.68 -2.39 -0.02 2.14 16 33 H 0.32 16.32 8.51 -89.69 -0.76 15.56 16 34 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 35 H 0.06 2.60 7.04 -2.39 -0.02 2.58 16 36 H 0.02 0.72 6.61 -2.39 -0.02 0.71 16 Total: -1.00 -62.00 271.89 -0.44 -62.43 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.28 Total: 19.92 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: 3.70 Total: -14.94 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -6.44 Total: -113.48 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -62.00 -0.44 -62.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250231953.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.002 kcal (2) G-P(sol) polarization free energy of solvation -61.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds