Wall clock time and date at job start Mon Mar 30 2020 03:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.47094 * 2 1 4 4 C 1.48066 * 111.00058 * 193.64339 * 3 2 1 5 5 C 1.50747 * 112.94084 * 192.22488 * 4 3 2 6 6 H 1.08994 * 109.64432 * 332.75967 * 5 4 3 7 7 C 1.53000 * 109.56003 * 212.48980 * 5 4 3 8 8 C 1.54520 * 108.94684 * 92.64981 * 5 4 3 9 9 N 1.40077 * 111.50767 * 283.99145 * 8 5 4 10 10 C 1.47692 * 114.56831 * 61.45226 * 9 8 5 11 11 H 1.08997 * 109.77617 * 38.35527 * 10 9 8 12 12 C 1.50702 * 109.73464 * 159.03650 * 10 9 8 13 13 H 1.07995 * 120.00456 * 118.64258 * 12 10 9 14 14 C 1.37880 * 119.99760 * 298.63898 * 12 10 9 15 15 N 1.31514 * 119.99959 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00049 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47023 * 59.99962 * 16 14 12 18 18 H 1.48503 * 109.47288 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47173 * 300.00245 * 16 14 12 20 20 C 1.47747 * 110.99871 * 66.04905 * 3 2 1 21 21 H 1.09002 * 109.47153 * 299.99508 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99681 * 1 2 3 24 24 H 1.08996 * 109.47853 * 120.00463 * 2 1 3 25 25 H 1.09002 * 109.47153 * 240.00492 * 2 1 3 26 26 H 1.09004 * 108.79461 * 313.11752 * 4 3 2 27 27 H 1.09005 * 108.78883 * 71.33585 * 4 3 2 28 28 H 1.08995 * 109.47202 * 300.53337 * 7 5 4 29 29 H 1.08999 * 109.47004 * 60.53784 * 7 5 4 30 30 H 1.09005 * 109.46889 * 180.53344 * 7 5 4 31 31 H 1.08997 * 109.07049 * 163.47112 * 8 5 4 32 32 H 1.08998 * 109.07138 * 44.51283 * 8 5 4 33 33 H 1.00902 * 111.00520 * 294.75914 * 9 8 5 34 34 H 0.97004 * 119.99581 * 179.97438 * 15 14 12 35 35 H 1.08995 * 108.99854 * 205.56772 * 20 3 2 36 36 H 1.08996 * 108.99166 * 324.31722 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4630 1.4375 -0.3261 5 6 4.0779 2.7870 -0.0551 6 1 3.3150 3.5608 -0.1394 7 6 5.1930 3.0545 -1.0680 8 6 4.6650 2.7929 1.3742 9 7 3.6592 2.9102 2.3421 10 6 2.6796 1.8049 2.3468 11 1 3.1882 0.8606 2.1530 12 6 1.9866 1.7448 3.6837 13 1 0.9176 1.8850 3.7446 14 6 2.7176 1.5107 4.8291 15 7 4.0194 1.3394 4.7549 16 14 1.8586 1.4355 6.4862 17 1 0.8526 0.3432 6.4731 18 1 2.8598 1.1742 7.5514 19 1 1.1806 2.7297 6.7515 20 6 1.6682 2.0708 1.2606 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 3.9850 0.6881 0.2690 27 1 3.5935 1.1978 -1.3814 28 1 5.9531 2.2778 -0.9850 29 1 4.7773 3.0500 -2.0756 30 1 5.6428 4.0264 -0.8648 31 1 5.3537 3.6319 1.4728 32 1 5.2111 1.8641 1.5388 33 1 3.1955 3.8039 2.2754 34 1 4.5337 1.1750 5.5608 35 1 1.6174 3.1442 1.0783 36 1 0.6905 1.7223 1.5933 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250231955.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:46 Heat of formation + Delta-G solvation = 4.699263 kcal Electronic energy + Delta-G solvation = -15322.636174 eV Core-core repulsion = 13034.527023 eV Total energy + Delta-G solvation = -2288.109150 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.96229 -34.94465 -33.68695 -31.62472 -30.05321 -28.02029 -25.36546 -24.20114 -23.45973 -21.46063 -19.83582 -18.61473 -16.78677 -15.48899 -14.78858 -14.62260 -14.42250 -14.25295 -13.33844 -12.97157 -12.46807 -12.28376 -12.08121 -12.02727 -11.52033 -11.36293 -10.96615 -10.82442 -10.69862 -10.64068 -10.54911 -10.17762 -10.12966 -9.92644 -9.80015 -9.02147 -8.37146 -7.58613 -6.59188 -5.84837 -3.99120 3.35957 3.40852 3.43163 4.46081 4.54824 5.25369 5.40116 5.40577 5.52916 5.61833 5.74580 5.88129 5.96899 6.01938 6.12261 6.17691 6.21398 6.27817 6.36169 6.42911 6.43555 6.53863 6.58663 6.68865 6.70438 6.94935 7.02633 7.42557 7.73278 7.80282 7.95865 8.34032 8.71948 9.07121 9.18998 9.69670 11.19479 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028178 B = 0.011635 C = 0.008849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.456886 B = 2405.980214 C = 3163.549709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 N -0.554 5.554 4 C 0.072 3.928 5 C -0.145 4.145 6 H 0.069 0.931 7 C -0.134 4.134 8 C 0.094 3.906 9 N -0.668 5.668 10 C 0.209 3.791 11 H 0.034 0.966 12 C -0.529 4.529 13 H 0.053 0.947 14 C 0.085 3.915 15 N -0.853 5.853 16 Si 0.882 3.118 17 H -0.279 1.279 18 H -0.289 1.289 19 H -0.278 1.278 20 C 0.029 3.971 21 H 0.060 0.940 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.038 0.962 25 H 0.058 0.942 26 H 0.031 0.969 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.318 0.682 34 H 0.255 0.745 35 H 0.053 0.947 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.149 0.318 -9.043 9.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.074 4.074 3 N -0.279 5.279 4 C -0.056 4.056 5 C -0.167 4.167 6 H 0.087 0.913 7 C -0.193 4.193 8 C -0.039 4.039 9 N -0.296 5.296 10 C 0.102 3.898 11 H 0.052 0.948 12 C -0.569 4.569 13 H 0.071 0.929 14 C -0.122 4.122 15 N -0.488 5.488 16 Si 0.710 3.290 17 H -0.205 1.205 18 H -0.215 1.215 19 H -0.203 1.203 20 C -0.099 4.099 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.056 0.944 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.822 0.204 -8.823 8.863 hybrid contribution -0.415 -0.222 0.795 0.924 sum -1.237 -0.018 -8.028 8.123 Atomic orbital electron populations 1.21789 0.95496 1.00727 1.02213 1.21907 0.95593 0.89868 1.00000 1.62226 1.14917 1.15239 1.35487 1.21765 0.87796 0.97001 0.99020 1.22241 0.97738 0.97191 0.99539 0.91263 1.21714 0.98410 1.01005 0.98154 1.21013 0.95498 1.00840 0.86594 1.57836 1.17699 1.05121 1.48919 1.19206 0.87598 0.90291 0.92693 0.94774 1.20943 0.92978 1.51556 0.91389 0.92928 1.24940 0.94553 0.94195 0.98471 1.70057 1.05278 1.45613 1.27829 0.86855 0.79343 0.78444 0.84324 1.20491 1.21457 1.20312 1.22988 1.01361 0.97391 0.88157 0.92087 0.93031 0.92732 0.94397 0.92305 0.95075 0.92625 0.93106 0.93533 0.92996 0.93430 0.92551 0.86327 0.93496 0.92889 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.89 37.16 0.37 -1.84 16 2 C 0.05 0.95 5.56 -3.82 -0.02 0.92 16 3 N -0.55 -10.41 4.74 -235.68 -1.12 -11.53 16 4 C 0.07 1.29 4.50 -4.31 -0.02 1.27 16 5 C -0.15 -2.50 2.47 -90.95 -0.22 -2.73 16 6 H 0.07 1.25 7.20 -51.93 -0.37 0.88 16 7 C -0.13 -1.89 8.91 37.16 0.33 -1.56 16 8 C 0.09 1.90 5.41 -6.55 -0.04 1.86 16 9 N -0.67 -15.59 5.43 -112.40 -0.61 -16.20 16 10 C 0.21 5.12 1.88 -69.54 -0.13 4.99 16 11 H 0.03 0.95 6.28 -51.93 -0.33 0.62 16 12 C -0.53 -14.41 8.65 -34.44 -0.30 -14.71 16 13 H 0.05 1.41 7.47 -52.49 -0.39 1.02 16 14 C 0.08 2.36 5.40 -17.82 -0.10 2.27 16 15 N -0.85 -24.83 12.84 55.43 0.71 -24.12 16 16 Si 0.88 21.32 29.54 -169.99 -5.02 16.30 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C 0.03 0.62 4.64 -4.47 -0.02 0.60 16 21 H 0.06 1.01 6.23 -51.93 -0.32 0.68 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.04 0.74 7.61 -51.93 -0.40 0.34 16 25 H 0.06 0.91 8.03 -51.93 -0.42 0.50 16 26 H 0.03 0.62 6.41 -51.93 -0.33 0.29 16 27 H 0.06 0.91 7.69 -51.93 -0.40 0.51 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.60 8.10 -51.93 -0.42 0.18 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 32 H 0.06 1.26 7.60 -51.93 -0.39 0.86 16 33 H 0.32 7.08 8.15 -39.29 -0.32 6.76 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.05 1.10 6.73 -51.93 -0.35 0.75 16 36 H 0.07 1.49 5.17 -51.93 -0.27 1.23 16 LS Contribution 272.74 15.07 4.11 4.11 Total: -1.00 -28.36 272.74 -8.03 -36.39 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.96 Total: 3.98 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -0.15 Total: -8.93 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -1.01 Total: -51.85 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.36 -8.03 -36.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250231955.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.092 kcal (2) G-P(sol) polarization free energy of solvation -28.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds