Wall clock time and date at job start Mon Mar 30 2020 03:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.47094 * 2 1 4 4 C 1.48066 * 111.00058 * 193.64339 * 3 2 1 5 5 C 1.50747 * 112.94084 * 192.22488 * 4 3 2 6 6 H 1.08994 * 109.64432 * 332.75967 * 5 4 3 7 7 C 1.53000 * 109.56003 * 212.48980 * 5 4 3 8 8 C 1.54520 * 108.94684 * 92.64981 * 5 4 3 9 9 N 1.40077 * 111.50767 * 283.99145 * 8 5 4 10 10 C 1.47692 * 114.56831 * 61.45226 * 9 8 5 11 11 H 1.08997 * 109.77617 * 38.35527 * 10 9 8 12 12 C 1.50702 * 109.73464 * 159.03650 * 10 9 8 13 13 H 1.07995 * 120.00456 * 118.64258 * 12 10 9 14 14 C 1.37880 * 119.99760 * 298.63898 * 12 10 9 15 15 N 1.31514 * 119.99959 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00049 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47023 * 59.99962 * 16 14 12 18 18 H 1.48503 * 109.47288 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47173 * 300.00245 * 16 14 12 20 20 C 1.47747 * 110.99871 * 66.04905 * 3 2 1 21 21 H 1.09002 * 109.47153 * 299.99508 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99681 * 1 2 3 24 24 H 1.08996 * 109.47853 * 120.00463 * 2 1 3 25 25 H 1.09002 * 109.47153 * 240.00492 * 2 1 3 26 26 H 1.09004 * 108.79461 * 313.11752 * 4 3 2 27 27 H 1.09005 * 108.78883 * 71.33585 * 4 3 2 28 28 H 1.08995 * 109.47202 * 300.53337 * 7 5 4 29 29 H 1.08999 * 109.47004 * 60.53784 * 7 5 4 30 30 H 1.09005 * 109.46889 * 180.53344 * 7 5 4 31 31 H 1.08997 * 109.07049 * 163.47112 * 8 5 4 32 32 H 1.08998 * 109.07138 * 44.51283 * 8 5 4 33 33 H 1.00902 * 111.00520 * 294.75914 * 9 8 5 34 34 H 0.97004 * 119.99581 * 179.97438 * 15 14 12 35 35 H 1.08995 * 108.99854 * 205.56772 * 20 3 2 36 36 H 1.08996 * 108.99166 * 324.31722 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4630 1.4375 -0.3261 5 6 4.0779 2.7870 -0.0551 6 1 3.3150 3.5608 -0.1394 7 6 5.1930 3.0545 -1.0680 8 6 4.6650 2.7929 1.3742 9 7 3.6592 2.9102 2.3421 10 6 2.6796 1.8049 2.3468 11 1 3.1882 0.8606 2.1530 12 6 1.9866 1.7448 3.6837 13 1 0.9176 1.8850 3.7446 14 6 2.7176 1.5107 4.8291 15 7 4.0194 1.3394 4.7549 16 14 1.8586 1.4355 6.4862 17 1 0.8526 0.3432 6.4731 18 1 2.8598 1.1742 7.5514 19 1 1.1806 2.7297 6.7515 20 6 1.6682 2.0708 1.2606 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 3.9850 0.6881 0.2690 27 1 3.5935 1.1978 -1.3814 28 1 5.9531 2.2778 -0.9850 29 1 4.7773 3.0500 -2.0756 30 1 5.6428 4.0264 -0.8648 31 1 5.3537 3.6319 1.4728 32 1 5.2111 1.8641 1.5388 33 1 3.1955 3.8039 2.2754 34 1 4.5337 1.1750 5.5608 35 1 1.6174 3.1442 1.0783 36 1 0.6905 1.7223 1.5933 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250231955.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:46 Heat of formation + Delta-G solvation = -15.373192 kcal Electronic energy + Delta-G solvation = -15323.506581 eV Core-core repulsion = 13034.527023 eV Total energy + Delta-G solvation = -2288.979557 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.59331 -36.48736 -35.46945 -33.55029 -31.52264 -29.63905 -27.16401 -25.61218 -25.23460 -23.14360 -21.38797 -20.22975 -18.80612 -16.99555 -16.58693 -16.36139 -16.16832 -15.85565 -14.96937 -14.51546 -14.08901 -13.92942 -13.44553 -13.38114 -13.02164 -12.92550 -12.78203 -12.58962 -12.43776 -12.09067 -11.98932 -11.86700 -11.80122 -11.58903 -11.47259 -10.99055 -10.51147 -9.20749 -8.39890 -7.93952 -6.18443 1.43043 1.44275 1.51082 2.46373 3.02860 3.23137 3.87645 3.93558 4.08911 4.19651 4.33873 4.43171 4.54628 4.61545 4.67668 4.70702 4.77392 4.84425 4.87453 4.99292 5.00814 5.13865 5.16600 5.25629 5.31079 5.31469 5.49119 5.55874 5.76298 6.10464 6.25044 6.35560 6.74038 7.17860 7.31922 7.54558 9.05852 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028178 B = 0.011635 C = 0.008849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.456886 B = 2405.980214 C = 3163.549709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.052 3.948 3 N -0.548 5.548 4 C 0.071 3.929 5 C -0.133 4.133 6 H 0.067 0.933 7 C -0.127 4.127 8 C 0.097 3.903 9 N -0.688 5.688 10 C 0.219 3.781 11 H -0.006 1.006 12 C -0.546 4.546 13 H 0.052 0.948 14 C 0.035 3.965 15 N -0.886 5.886 16 Si 0.947 3.053 17 H -0.273 1.273 18 H -0.288 1.288 19 H -0.271 1.271 20 C 0.043 3.957 21 H 0.043 0.957 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.006 0.994 25 H 0.081 0.919 26 H 0.003 0.997 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.026 0.974 33 H 0.323 0.677 34 H 0.253 0.747 35 H 0.057 0.943 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 0.844 -10.291 10.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.076 4.076 3 N -0.272 5.272 4 C -0.056 4.056 5 C -0.154 4.154 6 H 0.086 0.914 7 C -0.186 4.186 8 C -0.036 4.036 9 N -0.317 5.317 10 C 0.111 3.889 11 H 0.012 0.988 12 C -0.585 4.585 13 H 0.070 0.930 14 C -0.168 4.168 15 N -0.523 5.523 16 Si 0.773 3.227 17 H -0.198 1.198 18 H -0.214 1.214 19 H -0.196 1.196 20 C -0.086 4.086 21 H 0.062 0.938 22 H 0.091 0.909 23 H 0.087 0.913 24 H 0.025 0.975 25 H 0.100 0.900 26 H 0.021 0.979 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.143 0.857 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.558 0.732 -10.089 10.235 hybrid contribution -0.165 -0.417 1.146 1.231 sum -1.723 0.316 -8.943 9.113 Atomic orbital electron populations 1.21738 0.93651 1.02131 1.01976 1.22031 0.97163 0.88868 0.99585 1.62335 1.15406 1.15985 1.33517 1.21867 0.87044 0.96766 0.99926 1.22051 0.98564 0.96596 0.98226 0.91435 1.21660 0.97207 1.01787 0.97918 1.20936 0.94700 0.99780 0.88139 1.57595 1.18022 1.04902 1.51171 1.18927 0.88064 0.88978 0.92894 0.98809 1.21357 0.93202 1.51040 0.92887 0.92980 1.25682 0.95145 0.93981 1.01994 1.70202 1.06662 1.46934 1.28480 0.85826 0.78256 0.78664 0.79979 1.19840 1.21425 1.19634 1.22705 0.99911 0.97864 0.88158 0.93800 0.90905 0.91320 0.97535 0.90013 0.97867 0.89989 0.92858 0.91594 0.91742 0.92056 0.95541 0.85696 0.93794 0.92428 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 9.89 71.98 0.71 -3.25 16 2 C 0.05 1.75 5.56 86.30 0.48 2.23 16 3 N -0.55 -20.12 4.74 -899.56 -4.26 -24.38 16 4 C 0.07 2.50 4.50 85.35 0.38 2.89 16 5 C -0.13 -4.39 2.47 -11.01 -0.03 -4.41 16 6 H 0.07 2.30 7.20 -2.39 -0.02 2.29 16 7 C -0.13 -3.23 8.91 71.98 0.64 -2.59 16 8 C 0.10 3.94 5.41 88.05 0.48 4.41 16 9 N -0.69 -32.65 5.43 -509.54 -2.77 -35.42 16 10 C 0.22 10.99 1.88 43.30 0.08 11.08 16 11 H -0.01 -0.35 6.28 -2.39 -0.01 -0.36 16 12 C -0.55 -30.24 8.65 25.60 0.22 -30.02 16 13 H 0.05 2.82 7.47 -2.91 -0.02 2.80 16 14 C 0.04 1.98 5.40 84.66 0.46 2.44 16 15 N -0.89 -52.90 12.84 21.45 0.28 -52.62 16 16 Si 0.95 44.22 29.54 68.60 2.03 46.25 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 C 0.04 1.79 4.64 85.42 0.40 2.19 16 21 H 0.04 1.41 6.23 -2.39 -0.01 1.39 16 22 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 24 H 0.01 0.25 7.61 -2.39 -0.02 0.24 16 25 H 0.08 2.38 8.03 -2.39 -0.02 2.37 16 26 H 0.00 0.12 6.41 -2.39 -0.02 0.11 16 27 H 0.08 2.46 7.69 -2.38 -0.02 2.45 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.45 8.10 -2.39 -0.02 1.43 16 30 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.06 2.29 8.04 -2.39 -0.02 2.27 16 32 H 0.03 1.22 7.60 -2.39 -0.02 1.20 16 33 H 0.32 14.46 8.15 -89.69 -0.73 13.73 16 34 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 35 H 0.06 2.35 6.73 -2.39 -0.02 2.34 16 36 H 0.06 2.77 5.17 -2.39 -0.01 2.76 16 Total: -1.00 -61.50 272.74 -0.59 -62.09 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.32 Total: 19.13 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: 3.82 Total: -15.04 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -6.75 Total: -112.42 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -61.50 -0.59 -62.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250231955.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.715 kcal (2) G-P(sol) polarization free energy of solvation -61.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds