Wall clock time and date at job start Mon Mar 30 2020 03:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46905 * 109.47159 * 2 1 4 4 C 1.48061 * 110.99447 * 69.64637 * 3 2 1 5 5 C 1.53703 * 112.47082 * 192.19484 * 4 3 2 6 6 C 1.50801 * 112.09898 * 318.55252 * 5 4 3 7 7 H 1.08993 * 109.63179 * 332.85121 * 6 5 4 8 8 C 1.52995 * 109.63260 * 212.44968 * 6 5 4 9 9 N 1.47909 * 108.48884 * 92.55153 * 6 5 4 10 10 C 1.40017 * 114.07053 * 280.06482 * 9 6 5 11 11 C 1.44569 * 111.00212 * 301.95347 * 3 2 1 12 12 H 1.09005 * 109.57446 * 100.53013 * 11 3 2 13 13 C 1.50702 * 109.57570 * 340.15648 * 11 3 2 14 14 H 1.08001 * 119.99766 * 354.21531 * 13 11 3 15 15 C 1.37868 * 120.00218 * 174.21860 * 13 11 3 16 16 N 1.31518 * 119.99912 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 120.00315 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46997 * 89.99766 * 17 15 13 19 19 H 1.48493 * 109.47418 * 210.00049 * 17 15 13 20 20 H 1.48504 * 109.47067 * 330.00074 * 17 15 13 21 21 H 1.08999 * 109.47337 * 59.99273 * 1 2 3 22 22 H 1.09004 * 109.47070 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46686 * 299.99613 * 1 2 3 24 24 H 1.09003 * 109.47371 * 240.00648 * 2 1 3 25 25 H 1.09002 * 109.47909 * 120.00256 * 2 1 3 26 26 H 1.09000 * 108.88305 * 312.96404 * 4 3 2 27 27 H 1.09000 * 108.88696 * 71.52869 * 4 3 2 28 28 H 1.08998 * 108.95218 * 79.22869 * 5 4 3 29 29 H 1.08996 * 108.95500 * 197.96498 * 5 4 3 30 30 H 1.09005 * 109.47262 * 60.00149 * 8 6 5 31 31 H 1.09006 * 109.47222 * 179.97438 * 8 6 5 32 32 H 1.08995 * 109.47392 * 300.00057 * 8 6 5 33 33 H 1.00900 * 110.99788 * 153.78316 * 9 6 5 34 34 H 1.08998 * 108.95923 * 182.48531 * 10 9 6 35 35 H 1.08997 * 108.95957 * 301.23227 * 10 9 6 36 36 H 0.97006 * 119.99828 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7432 2.0454 1.2960 5 6 1.9634 3.5655 1.2396 6 6 3.2013 3.9309 0.4595 7 1 3.9191 3.1121 0.5074 8 6 3.8255 5.1971 1.0493 9 7 2.8149 4.1715 -0.9478 10 6 2.6470 3.0036 -1.7016 11 6 1.5189 2.1116 -1.1451 12 1 0.6767 2.7341 -0.8430 13 6 1.0752 1.1380 -2.2063 14 1 1.2474 0.0800 -2.0745 15 6 0.4494 1.5978 -3.3455 16 7 0.2393 2.8861 -3.5059 17 14 -0.1001 0.3910 -4.6613 18 1 -1.4885 -0.0528 -4.3772 19 1 -0.0539 1.0523 -5.9900 20 1 0.8053 -0.7862 -4.6625 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 0.7089 1.8491 1.5784 27 1 2.4019 1.6231 2.0548 28 1 1.0978 4.0314 0.7687 29 1 2.0614 3.9471 2.2558 30 1 4.0934 5.0189 2.0908 31 1 4.7200 5.4585 0.4840 32 1 3.1080 6.0157 0.9937 33 1 3.4615 4.8022 -1.3974 34 1 2.4082 3.2767 -2.7294 35 1 3.5796 2.4395 -1.6930 36 1 -0.2014 3.2096 -4.3073 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250350149.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:20 Heat of formation + Delta-G solvation = 1.264842 kcal Electronic energy + Delta-G solvation = -15564.612174 eV Core-core repulsion = 13276.354096 eV Total energy + Delta-G solvation = -2288.258078 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.38868 -37.19876 -35.03840 -33.22671 -31.53484 -29.40468 -28.12696 -25.48040 -24.47225 -23.40206 -21.18377 -20.08035 -18.52387 -17.21708 -16.54450 -16.09705 -15.91881 -15.64107 -15.22654 -14.55725 -14.29759 -13.74315 -13.51750 -13.31167 -12.98243 -12.84140 -12.66115 -12.55991 -12.47249 -12.06173 -11.77916 -11.60356 -11.52746 -11.43499 -11.19859 -10.62300 -10.50796 -8.92726 -8.67715 -8.05813 -6.12985 1.41266 1.43386 1.52177 2.44209 3.20270 3.44658 3.60556 4.09250 4.19758 4.35493 4.50550 4.54468 4.66909 4.73181 4.80878 4.86310 4.90422 4.95781 5.04615 5.07178 5.14781 5.19737 5.32336 5.37970 5.48794 5.57046 5.72864 5.78965 5.94955 6.15136 6.50230 6.66561 6.90777 7.02209 7.06481 7.52614 9.00356 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034135 B = 0.012106 C = 0.009652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.066426 B = 2312.330842 C = 2900.215443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.072 3.928 3 N -0.560 5.560 4 C 0.058 3.942 5 C -0.108 4.108 6 C 0.096 3.904 7 H 0.034 0.966 8 C -0.138 4.138 9 N -0.700 5.700 10 C 0.108 3.892 11 C 0.241 3.759 12 H -0.022 1.022 13 C -0.529 4.529 14 H 0.079 0.921 15 C 0.014 3.986 16 N -0.911 5.911 17 Si 0.947 3.053 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.266 1.266 21 H 0.065 0.935 22 H 0.057 0.943 23 H 0.037 0.963 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.020 0.980 27 H 0.076 0.924 28 H 0.039 0.961 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.334 0.666 34 H 0.053 0.947 35 H -0.020 1.020 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.578 -0.032 8.330 9.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.056 4.056 3 N -0.284 5.284 4 C -0.069 4.069 5 C -0.147 4.147 6 C -0.012 4.012 7 H 0.052 0.948 8 C -0.196 4.196 9 N -0.333 5.333 10 C -0.024 4.024 11 C 0.132 3.868 12 H -0.005 1.005 13 C -0.567 4.567 14 H 0.097 0.903 15 C -0.186 4.186 16 N -0.550 5.550 17 Si 0.773 3.227 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.191 1.191 21 H 0.084 0.916 22 H 0.076 0.924 23 H 0.056 0.944 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.039 0.961 27 H 0.095 0.905 28 H 0.057 0.943 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.153 0.847 34 H 0.071 0.929 35 H -0.002 1.002 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.352 0.105 8.315 9.386 hybrid contribution -0.596 -0.622 -1.190 1.469 sum 3.756 -0.518 7.126 8.072 Atomic orbital electron populations 1.22577 0.98603 1.01310 1.01968 1.21900 0.93042 0.90084 1.00566 1.61094 1.61683 1.03041 1.02603 1.22417 0.98341 0.94666 0.91508 1.21465 0.98189 0.94608 1.00398 1.21144 0.95162 0.97242 0.87679 0.94813 1.21879 1.00165 0.96188 1.01331 1.57796 1.54676 1.17592 1.03203 1.20578 0.95626 0.89307 0.96888 1.18631 0.90158 0.90988 0.86993 1.00473 1.21995 1.36875 0.94529 1.03319 0.90318 1.25700 0.96429 0.96364 1.00087 1.70149 1.42939 1.14015 1.27946 0.85721 0.78639 0.79524 0.78790 1.20491 1.21392 1.19056 0.91601 0.92382 0.94381 0.91517 0.91468 0.96136 0.90528 0.94257 0.89024 0.90194 0.92255 0.92261 0.84667 0.92915 1.00232 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.42 9.00 71.98 0.65 -6.78 16 2 C 0.07 2.85 5.49 86.30 0.47 3.33 16 3 N -0.56 -24.24 4.12 -874.11 -3.60 -27.84 16 4 C 0.06 2.14 5.35 86.32 0.46 2.60 16 5 C -0.11 -3.78 4.92 30.12 0.15 -3.64 16 6 C 0.10 3.33 2.77 44.01 0.12 3.45 16 7 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 8 C -0.14 -3.50 9.02 71.98 0.65 -2.85 16 9 N -0.70 -29.29 6.02 -505.86 -3.05 -32.34 16 10 C 0.11 5.34 5.37 87.95 0.47 5.81 16 11 C 0.24 12.24 1.24 45.01 0.06 12.30 16 12 H -0.02 -1.33 6.93 -2.38 -0.02 -1.34 16 13 C -0.53 -28.27 5.35 25.60 0.14 -28.13 16 14 H 0.08 4.08 4.55 -2.91 -0.01 4.07 16 15 C 0.01 0.76 5.18 84.65 0.44 1.19 16 16 N -0.91 -53.08 11.91 21.44 0.26 -52.82 16 17 Si 0.95 43.45 29.54 68.60 2.03 45.47 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 H 0.07 3.17 5.24 -2.39 -0.01 3.15 16 22 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 23 H 0.04 1.44 6.45 -2.38 -0.02 1.42 16 24 H 0.07 2.84 5.87 -2.39 -0.01 2.83 16 25 H 0.07 2.28 8.09 -2.39 -0.02 2.26 16 26 H 0.02 0.77 6.18 -2.39 -0.01 0.76 16 27 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.04 1.63 7.23 -2.39 -0.02 1.61 16 29 H 0.09 2.50 7.70 -2.39 -0.02 2.48 16 30 H 0.08 1.64 8.09 -2.38 -0.02 1.62 16 31 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.33 12.52 8.47 -89.69 -0.76 11.76 16 34 H 0.05 2.95 6.41 -2.39 -0.02 2.93 16 35 H -0.02 -1.02 8.06 -2.39 -0.02 -1.04 16 36 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 Total: -1.00 -60.57 264.34 -0.46 -61.02 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.30 Total: 19.21 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 3.61 Total: -12.71 kcal Atomic # 7 Polarization: -106.61 SS G_CDS: -6.39 Total: -113.00 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -60.57 -0.46 -61.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250350149.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.288 kcal (2) G-P(sol) polarization free energy of solvation -60.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds