Wall clock time and date at job start Mon Mar 30 2020 03:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46897 * 109.47013 * 2 1 4 4 C 1.48070 * 111.00129 * 293.95139 * 3 2 1 5 5 C 1.50743 * 112.93773 * 192.22198 * 4 3 2 6 6 C 1.54513 * 108.93873 * 92.65400 * 5 4 3 7 7 N 1.40080 * 111.51335 * 283.97983 * 6 5 4 8 8 C 1.46904 * 110.99607 * 188.13945 * 7 6 5 9 9 C 1.47689 * 114.56801 * 61.45193 * 7 6 5 10 10 H 1.09004 * 109.73749 * 38.39117 * 9 7 6 11 11 C 1.50699 * 109.73822 * 159.04566 * 9 7 6 12 12 H 1.08000 * 119.99737 * 54.89730 * 11 9 7 13 13 C 1.37881 * 119.99787 * 234.62109 * 11 9 7 14 14 N 1.31509 * 120.00302 * 353.87723 * 13 11 9 15 15 Si 1.86802 * 119.99719 * 173.87970 * 13 11 9 16 16 H 1.48499 * 109.47273 * 59.99936 * 15 13 11 17 17 H 1.48499 * 109.47099 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47040 * 299.99798 * 15 13 11 19 19 C 1.47690 * 110.96272 * 166.36011 * 3 2 1 20 20 H 1.08995 * 109.46805 * 60.00103 * 1 2 3 21 21 H 1.09001 * 109.46596 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.46769 * 300.00428 * 1 2 3 23 23 H 1.08998 * 109.47440 * 239.99885 * 2 1 3 24 24 H 1.08995 * 109.46805 * 119.99897 * 2 1 3 25 25 H 1.09006 * 108.78914 * 71.33082 * 4 3 2 26 26 H 1.08997 * 108.69907 * 313.05323 * 4 3 2 27 27 H 1.08998 * 109.55571 * 332.81635 * 5 4 3 28 28 H 1.08997 * 109.55984 * 212.49028 * 5 4 3 29 29 H 1.08997 * 109.07105 * 163.45440 * 6 5 4 30 30 H 1.08999 * 109.01604 * 44.46918 * 6 5 4 31 31 H 1.08993 * 109.47466 * 285.25343 * 8 7 6 32 32 H 1.09001 * 109.46975 * 45.25738 * 8 7 6 33 33 H 1.09004 * 109.46841 * 165.25252 * 8 7 6 34 34 H 0.97001 * 120.00185 * 180.02562 * 14 13 11 35 35 H 1.08993 * 109.00295 * 324.33365 * 19 3 2 36 36 H 1.09000 * 108.94150 * 205.60764 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6675 2.0723 -1.2633 5 6 2.3893 3.3840 -1.4395 6 6 3.6890 3.1378 -2.2379 7 7 4.6787 2.5498 -1.4397 8 6 5.9643 2.4973 -2.1486 9 6 4.3206 1.2249 -0.8942 10 1 3.7671 0.6564 -1.6416 11 6 5.5717 0.4776 -0.5102 12 1 6.2817 0.9262 0.1687 13 6 5.8069 -0.7813 -1.0212 14 7 4.8868 -1.3794 -1.7459 15 14 7.4327 -1.6373 -0.6840 16 1 7.6089 -1.8059 0.7808 17 1 7.4361 -2.9694 -1.3402 18 1 8.5458 -0.8166 -1.2252 19 6 3.4594 1.4364 0.3252 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 0.5935 2.2584 -1.2742 26 1 1.9184 1.4186 -2.0986 27 1 2.6345 3.7996 -0.4621 28 1 1.7525 4.0805 -1.9847 29 1 4.0582 4.0897 -2.6195 30 1 3.4704 2.4784 -3.0778 31 1 5.9317 1.7106 -2.9023 32 1 6.1521 3.4560 -2.6320 33 1 6.7629 2.2863 -1.4374 34 1 5.0522 -2.2651 -2.1050 35 1 3.6856 0.6619 1.0579 36 1 3.6899 2.4100 0.7577 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250384814.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:58 Heat of formation + Delta-G solvation = 11.182461 kcal Electronic energy + Delta-G solvation = -15504.885356 eV Core-core repulsion = 13217.057338 eV Total energy + Delta-G solvation = -2287.828018 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.79923 -35.42534 -33.14839 -31.39252 -30.39653 -27.12314 -26.17542 -23.85512 -23.38033 -21.41448 -19.70854 -18.60224 -16.63955 -15.24675 -15.02003 -14.79720 -14.03326 -13.86109 -13.78057 -13.23264 -12.38568 -12.14161 -11.77509 -11.70282 -11.50049 -11.16501 -10.95437 -10.92117 -10.78717 -10.60780 -10.51871 -10.20781 -9.91178 -9.72308 -9.52066 -9.08055 -8.65901 -7.42263 -6.81769 -6.12973 -4.15187 3.25942 3.31190 3.33972 4.34025 4.73454 5.04627 5.37403 5.52120 5.63001 5.69235 5.89516 5.99197 6.02792 6.27152 6.32651 6.41791 6.42545 6.46453 6.51695 6.58693 6.72873 6.74398 6.82370 6.83877 6.99020 7.08956 7.35089 7.62092 7.75988 7.87171 7.96521 8.19102 8.41140 8.87417 8.99915 9.49033 10.94847 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028218 B = 0.012923 C = 0.009763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.029414 B = 2166.217230 C = 2867.293752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.056 3.944 3 N -0.552 5.552 4 C 0.063 3.937 5 C -0.118 4.118 6 C 0.078 3.922 7 N -0.567 5.567 8 C 0.064 3.936 9 C 0.178 3.822 10 H 0.050 0.950 11 C -0.508 4.508 12 H 0.060 0.940 13 C 0.067 3.933 14 N -0.891 5.891 15 Si 0.893 3.107 16 H -0.275 1.275 17 H -0.288 1.288 18 H -0.275 1.275 19 C 0.073 3.927 20 H 0.047 0.953 21 H 0.049 0.951 22 H 0.054 0.946 23 H 0.043 0.957 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.029 0.971 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.004 0.996 31 H 0.018 0.982 32 H 0.028 0.972 33 H 0.068 0.932 34 H 0.263 0.737 35 H 0.065 0.935 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.711 4.546 0.203 6.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 N -0.277 5.277 4 C -0.065 4.065 5 C -0.156 4.156 6 C -0.052 4.052 7 N -0.293 5.293 8 C -0.084 4.084 9 C 0.073 3.927 10 H 0.067 0.933 11 C -0.548 4.548 12 H 0.078 0.922 13 C -0.136 4.136 14 N -0.529 5.529 15 Si 0.720 3.280 16 H -0.200 1.200 17 H -0.214 1.214 18 H -0.201 1.201 19 C -0.054 4.054 20 H 0.066 0.934 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.061 0.939 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.021 0.979 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.958 4.899 0.833 7.020 hybrid contribution 1.187 -1.533 -1.292 2.330 sum -3.771 3.366 -0.459 5.075 Atomic orbital electron populations 1.21798 0.96540 1.00443 1.01414 1.21967 0.94019 0.89757 1.01515 1.62266 1.17835 1.14962 1.32665 1.21740 0.98421 0.95015 0.91291 1.21533 0.95944 0.96677 1.01428 1.20944 0.92837 0.97580 0.93884 1.59451 1.02804 1.28528 1.38477 1.21850 0.92788 0.96830 0.96938 1.19730 0.95718 0.83613 0.93666 0.93257 1.20944 1.05813 1.00222 1.27788 0.92208 1.24994 0.96646 0.97321 0.94621 1.69904 1.33141 1.14670 1.35198 0.86642 0.84156 0.78555 0.78632 1.20030 1.21369 1.20088 1.22202 0.83539 1.00726 0.98931 0.93398 0.93212 0.92687 0.93894 0.91519 0.92512 0.95290 0.90385 0.92087 0.93142 0.97852 0.96368 0.95312 0.91330 0.92749 0.91651 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.84 37.16 0.37 -1.90 16 2 C 0.06 1.09 5.55 -3.82 -0.02 1.07 16 3 N -0.55 -11.20 4.74 -235.73 -1.12 -12.31 16 4 C 0.06 1.19 4.45 -4.31 -0.02 1.17 16 5 C -0.12 -2.08 5.68 -27.07 -0.15 -2.23 16 6 C 0.08 1.54 4.95 -6.55 -0.03 1.51 16 7 N -0.57 -12.73 4.20 -241.36 -1.01 -13.75 16 8 C 0.06 1.39 8.64 60.07 0.52 1.91 16 9 C 0.18 4.41 2.09 -69.54 -0.15 4.26 16 10 H 0.05 1.39 5.28 -51.93 -0.27 1.11 16 11 C -0.51 -13.54 6.01 -34.44 -0.21 -13.75 16 12 H 0.06 1.60 7.58 -52.49 -0.40 1.21 16 13 C 0.07 1.82 5.45 -17.82 -0.10 1.72 16 14 N -0.89 -25.17 12.65 55.43 0.70 -24.47 16 15 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 C 0.07 1.67 4.81 -4.50 -0.02 1.64 16 20 H 0.05 0.73 6.81 -51.93 -0.35 0.37 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.04 0.97 7.73 -51.93 -0.40 0.57 16 24 H 0.07 1.32 7.70 -51.93 -0.40 0.92 16 25 H 0.06 0.95 7.03 -51.93 -0.37 0.59 16 26 H 0.03 0.62 6.28 -51.93 -0.33 0.29 16 27 H 0.08 1.44 7.19 -51.93 -0.37 1.07 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.90 7.78 -51.93 -0.40 0.49 16 30 H 0.00 0.08 7.59 -51.93 -0.39 -0.32 16 31 H 0.02 0.43 8.10 -51.93 -0.42 0.00 16 32 H 0.03 0.53 7.76 -51.93 -0.40 0.13 16 33 H 0.07 1.54 6.90 -51.93 -0.36 1.18 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 35 H 0.07 1.56 7.15 -51.93 -0.37 1.19 16 36 H 0.06 1.36 7.20 -51.93 -0.37 0.99 16 LS Contribution 270.74 15.07 4.08 4.08 Total: -1.00 -27.49 270.74 -8.20 -35.70 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.02 Total: -0.56 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 0.19 Total: -4.59 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -1.43 Total: -50.53 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.49 -8.20 -35.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250384814.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.880 kcal (2) G-P(sol) polarization free energy of solvation -27.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds