Wall clock time and date at job start Mon Mar 30 2020 03:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46897 * 109.47013 * 2 1 4 4 C 1.48070 * 111.00129 * 293.95139 * 3 2 1 5 5 C 1.50743 * 112.93773 * 192.22198 * 4 3 2 6 6 C 1.54513 * 108.93873 * 92.65400 * 5 4 3 7 7 N 1.40080 * 111.51335 * 283.97983 * 6 5 4 8 8 C 1.46904 * 110.99607 * 188.13945 * 7 6 5 9 9 C 1.47689 * 114.56801 * 61.45193 * 7 6 5 10 10 H 1.09004 * 109.73749 * 38.39117 * 9 7 6 11 11 C 1.50699 * 109.73822 * 159.04566 * 9 7 6 12 12 H 1.08000 * 119.99737 * 54.89730 * 11 9 7 13 13 C 1.37881 * 119.99787 * 234.62109 * 11 9 7 14 14 N 1.31509 * 120.00302 * 353.87723 * 13 11 9 15 15 Si 1.86802 * 119.99719 * 173.87970 * 13 11 9 16 16 H 1.48499 * 109.47273 * 59.99936 * 15 13 11 17 17 H 1.48499 * 109.47099 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47040 * 299.99798 * 15 13 11 19 19 C 1.47690 * 110.96272 * 166.36011 * 3 2 1 20 20 H 1.08995 * 109.46805 * 60.00103 * 1 2 3 21 21 H 1.09001 * 109.46596 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.46769 * 300.00428 * 1 2 3 23 23 H 1.08998 * 109.47440 * 239.99885 * 2 1 3 24 24 H 1.08995 * 109.46805 * 119.99897 * 2 1 3 25 25 H 1.09006 * 108.78914 * 71.33082 * 4 3 2 26 26 H 1.08997 * 108.69907 * 313.05323 * 4 3 2 27 27 H 1.08998 * 109.55571 * 332.81635 * 5 4 3 28 28 H 1.08997 * 109.55984 * 212.49028 * 5 4 3 29 29 H 1.08997 * 109.07105 * 163.45440 * 6 5 4 30 30 H 1.08999 * 109.01604 * 44.46918 * 6 5 4 31 31 H 1.08993 * 109.47466 * 285.25343 * 8 7 6 32 32 H 1.09001 * 109.46975 * 45.25738 * 8 7 6 33 33 H 1.09004 * 109.46841 * 165.25252 * 8 7 6 34 34 H 0.97001 * 120.00185 * 180.02562 * 14 13 11 35 35 H 1.08993 * 109.00295 * 324.33365 * 19 3 2 36 36 H 1.09000 * 108.94150 * 205.60764 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6675 2.0723 -1.2633 5 6 2.3893 3.3840 -1.4395 6 6 3.6890 3.1378 -2.2379 7 7 4.6787 2.5498 -1.4397 8 6 5.9643 2.4973 -2.1486 9 6 4.3206 1.2249 -0.8942 10 1 3.7671 0.6564 -1.6416 11 6 5.5717 0.4776 -0.5102 12 1 6.2817 0.9262 0.1687 13 6 5.8069 -0.7813 -1.0212 14 7 4.8868 -1.3794 -1.7459 15 14 7.4327 -1.6373 -0.6840 16 1 7.6089 -1.8059 0.7808 17 1 7.4361 -2.9694 -1.3402 18 1 8.5458 -0.8166 -1.2252 19 6 3.4594 1.4364 0.3252 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 0.5935 2.2584 -1.2742 26 1 1.9184 1.4186 -2.0986 27 1 2.6345 3.7996 -0.4621 28 1 1.7525 4.0805 -1.9847 29 1 4.0582 4.0897 -2.6195 30 1 3.4704 2.4784 -3.0778 31 1 5.9317 1.7106 -2.9023 32 1 6.1521 3.4560 -2.6320 33 1 6.7629 2.2863 -1.4374 34 1 5.0522 -2.2651 -2.1050 35 1 3.6856 0.6619 1.0579 36 1 3.6899 2.4100 0.7577 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250384814.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:57 Heat of formation + Delta-G solvation = -7.873976 kcal Electronic energy + Delta-G solvation = -15505.711705 eV Core-core repulsion = 13217.057338 eV Total energy + Delta-G solvation = -2288.654367 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.51920 -37.10574 -35.08789 -33.07750 -32.08359 -28.85150 -27.98096 -25.67268 -25.11193 -23.03227 -21.38824 -20.35527 -18.66320 -17.02479 -16.76502 -16.53299 -15.83206 -15.52193 -15.44744 -14.86217 -14.21030 -13.77912 -13.43535 -13.38374 -13.04748 -12.84958 -12.78129 -12.69782 -12.44701 -12.33187 -12.20180 -11.82033 -11.71868 -11.33541 -11.24037 -11.06354 -10.72237 -9.19156 -8.65653 -8.20564 -6.29039 1.37828 1.38801 1.46598 2.36466 3.01727 3.15091 3.56259 4.01388 4.12358 4.15361 4.44402 4.51488 4.60377 4.71910 4.72951 4.78163 4.85320 4.87083 4.94693 5.00753 5.04252 5.10344 5.15882 5.27246 5.36345 5.38551 5.52313 5.59191 5.73008 5.93783 6.30648 6.41453 6.46375 6.92896 7.05476 7.38611 8.86350 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028218 B = 0.012923 C = 0.009763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.029414 B = 2166.217230 C = 2867.293752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.058 3.942 3 N -0.546 5.546 4 C 0.064 3.936 5 C -0.109 4.109 6 C 0.072 3.928 7 N -0.568 5.568 8 C 0.069 3.931 9 C 0.185 3.815 10 H 0.011 0.989 11 C -0.518 4.518 12 H 0.055 0.945 13 C 0.020 3.980 14 N -0.923 5.923 15 Si 0.953 3.047 16 H -0.268 1.268 17 H -0.287 1.287 18 H -0.269 1.269 19 C 0.084 3.916 20 H 0.054 0.946 21 H 0.065 0.935 22 H 0.069 0.931 23 H 0.003 0.997 24 H 0.057 0.943 25 H 0.087 0.913 26 H -0.002 1.002 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.079 0.921 30 H -0.018 1.018 31 H -0.012 1.012 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.261 0.739 35 H 0.044 0.956 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.291 5.979 0.572 8.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.070 4.070 3 N -0.270 5.270 4 C -0.064 4.064 5 C -0.147 4.147 6 C -0.058 4.058 7 N -0.293 5.293 8 C -0.079 4.079 9 C 0.078 3.922 10 H 0.029 0.971 11 C -0.557 4.557 12 H 0.073 0.927 13 C -0.180 4.180 14 N -0.563 5.563 15 Si 0.778 3.222 16 H -0.193 1.193 17 H -0.213 1.213 18 H -0.194 1.194 19 C -0.044 4.044 20 H 0.073 0.927 21 H 0.084 0.916 22 H 0.088 0.912 23 H 0.021 0.979 24 H 0.075 0.925 25 H 0.105 0.895 26 H 0.016 0.984 27 H 0.094 0.906 28 H 0.119 0.881 29 H 0.097 0.903 30 H 0.000 1.000 31 H 0.007 0.993 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.542 6.352 1.206 8.515 hybrid contribution 1.348 -1.937 -1.434 2.761 sum -4.194 4.415 -0.228 6.094 Atomic orbital electron populations 1.21696 0.92838 1.01945 1.02424 1.21970 0.96984 0.88982 0.99111 1.62371 1.15865 1.15272 1.33515 1.21861 1.00391 0.94904 0.89221 1.21544 0.95206 0.96514 1.01457 1.21119 0.93445 0.97968 0.93262 1.59480 1.03771 1.26845 1.39181 1.21820 0.92400 0.97739 0.95945 1.19533 0.94916 0.84268 0.93451 0.97092 1.21177 1.06356 1.00615 1.27525 0.92675 1.25722 0.99658 0.98056 0.94562 1.70050 1.34866 1.14889 1.36460 0.85683 0.80362 0.77421 0.78717 1.19277 1.21291 1.19353 1.21958 0.85024 0.99985 0.97475 0.92661 0.91612 0.91191 0.97900 0.92486 0.89488 0.98375 0.90618 0.88094 0.90257 1.00031 0.99342 0.91653 0.92389 0.92982 0.93730 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 9.84 71.98 0.71 -3.17 16 2 C 0.06 2.30 5.55 86.31 0.48 2.78 16 3 N -0.55 -21.92 4.74 -899.73 -4.26 -26.18 16 4 C 0.06 2.31 4.45 85.35 0.38 2.69 16 5 C -0.11 -3.57 5.68 30.38 0.17 -3.40 16 6 C 0.07 2.74 4.95 88.05 0.44 3.18 16 7 N -0.57 -25.28 4.20 -917.52 -3.85 -29.13 16 8 C 0.07 2.98 8.64 127.69 1.10 4.08 16 9 C 0.18 9.36 2.09 43.30 0.09 9.45 16 10 H 0.01 0.66 5.28 -2.38 -0.01 0.64 16 11 C -0.52 -28.21 6.01 25.60 0.15 -28.06 16 12 H 0.06 3.00 7.58 -2.91 -0.02 2.98 16 13 C 0.02 1.09 5.45 84.66 0.46 1.55 16 14 N -0.92 -54.09 12.65 21.45 0.27 -53.82 16 15 Si 0.95 43.54 29.54 68.60 2.03 45.57 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 C 0.08 3.85 4.81 85.43 0.41 4.26 16 20 H 0.05 1.55 6.81 -2.39 -0.02 1.53 16 21 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.00 0.13 7.73 -2.39 -0.02 0.11 16 24 H 0.06 2.32 7.70 -2.39 -0.02 2.30 16 25 H 0.09 2.66 7.03 -2.38 -0.02 2.64 16 26 H 0.00 -0.09 6.28 -2.39 -0.01 -0.11 16 27 H 0.08 2.57 7.19 -2.39 -0.02 2.55 16 28 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.08 2.57 7.78 -2.39 -0.02 2.56 16 30 H -0.02 -0.78 7.59 -2.39 -0.02 -0.80 16 31 H -0.01 -0.60 8.10 -2.39 -0.02 -0.62 16 32 H 0.06 2.31 7.76 -2.39 -0.02 2.30 16 33 H 0.06 2.59 6.90 -2.39 -0.02 2.57 16 34 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 35 H 0.04 2.19 7.15 -2.39 -0.02 2.17 16 36 H 0.06 2.89 7.20 -2.39 -0.02 2.87 16 Total: -1.00 -60.76 270.74 -0.39 -61.15 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 1.03 Total: 9.05 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 4.40 Total: -6.64 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -7.84 Total: -109.13 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -60.76 -0.39 -61.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250384814.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.276 kcal (2) G-P(sol) polarization free energy of solvation -60.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds