Wall clock time and date at job start Mon Mar 30 2020 03:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.46894 * 2 1 4 4 C 1.40077 * 111.00140 * 296.42489 * 3 2 1 5 5 C 1.54523 * 111.50336 * 188.15258 * 4 3 2 6 6 C 1.50746 * 108.94555 * 283.99222 * 5 4 3 7 7 H 1.09000 * 108.79242 * 331.75694 * 6 5 4 8 8 C 1.53004 * 108.78814 * 213.53783 * 6 5 4 9 9 N 1.48069 * 112.93654 * 92.65256 * 6 5 4 10 10 C 1.47751 * 113.78852 * 318.28020 * 9 6 5 11 11 H 1.08999 * 108.92677 * 79.46098 * 10 9 6 12 12 C 1.50697 * 108.99680 * 198.25486 * 10 9 6 13 13 H 1.07993 * 120.00028 * 122.40124 * 12 10 9 14 14 C 1.37877 * 119.99751 * 302.68531 * 12 10 9 15 15 N 1.31518 * 120.00246 * 359.71813 * 14 12 10 16 16 Si 1.86804 * 120.00116 * 179.72414 * 14 12 10 17 17 H 1.48503 * 109.46886 * 59.99410 * 16 14 12 18 18 H 1.48500 * 109.47268 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46802 * 299.99624 * 16 14 12 20 20 C 1.47688 * 110.99978 * 65.07287 * 3 2 1 21 21 H 1.09005 * 109.47034 * 305.59337 * 1 2 3 22 22 H 1.09001 * 109.47368 * 65.59493 * 1 2 3 23 23 H 1.08999 * 109.47237 * 185.59941 * 1 2 3 24 24 H 1.08997 * 109.47160 * 240.00127 * 2 1 3 25 25 H 1.08996 * 109.47149 * 119.99907 * 2 1 3 26 26 H 1.08992 * 109.07499 * 308.67570 * 4 3 2 27 27 H 1.09004 * 109.06954 * 67.63577 * 4 3 2 28 28 H 1.08996 * 109.55699 * 43.83779 * 5 4 3 29 29 H 1.08996 * 109.55328 * 164.04848 * 5 4 3 30 30 H 1.09007 * 109.46647 * 60.00627 * 8 6 5 31 31 H 1.08995 * 109.46932 * 180.02562 * 8 6 5 32 32 H 1.08994 * 109.47164 * 300.00883 * 8 6 5 33 33 H 1.00909 * 110.99836 * 192.22198 * 9 6 5 34 34 H 0.97004 * 120.00165 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.73762 * 32.32415 * 20 3 2 36 36 H 1.09005 * 109.73371 * 271.62918 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6382 2.0523 -1.1711 5 6 2.3130 3.4383 -1.2786 6 6 1.6211 4.3936 -0.3399 7 1 0.5860 4.0757 -0.2154 8 6 1.6327 5.7912 -0.9624 9 7 2.2633 4.4598 0.9927 10 6 2.6798 3.1437 1.5195 11 1 3.6192 2.8553 1.0479 12 6 2.8925 3.2559 3.0072 13 1 2.3372 2.6207 3.6814 14 6 3.7916 4.1735 3.5078 15 7 4.4678 4.9470 2.6867 16 14 4.0496 4.3179 5.3523 17 1 4.5273 3.0181 5.8885 18 1 5.0611 5.3692 5.6298 19 1 2.7659 4.6809 6.0047 20 6 1.6481 2.0777 1.2503 21 1 -0.3633 0.5982 0.8357 22 1 -0.3634 0.4246 -0.9358 23 1 -0.3634 -1.0227 0.1003 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.9232 1.4496 -2.0333 27 1 0.5560 2.1821 -1.1706 28 1 3.3645 3.3544 -1.0044 29 1 2.2308 3.8056 -2.3015 30 1 1.1086 5.7677 -1.9179 31 1 1.1351 6.4917 -0.2918 32 1 2.6629 6.1099 -1.1208 33 1 1.6748 4.9442 1.6540 34 1 5.1006 5.5923 3.0389 35 1 1.6313 1.3651 2.0750 36 1 0.6654 2.5361 1.1392 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250451971.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:29 Heat of formation + Delta-G solvation = 8.708881 kcal Electronic energy + Delta-G solvation = -15301.683254 eV Core-core repulsion = 13013.747974 eV Total energy + Delta-G solvation = -2287.935280 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.04288 -35.32341 -33.28953 -30.91215 -30.41238 -27.36207 -26.35811 -24.80962 -22.97294 -21.41705 -19.59011 -18.60304 -16.50843 -15.41914 -14.87383 -14.64492 -14.31504 -14.29118 -13.40421 -12.95404 -12.86855 -12.23342 -11.87321 -11.70258 -11.60471 -11.32148 -11.05353 -10.96598 -10.77919 -10.68388 -10.53154 -10.31648 -9.96588 -9.77368 -9.51000 -8.87434 -8.34747 -7.57527 -6.56681 -5.82296 -3.96741 3.37270 3.42662 3.44667 4.46656 4.64365 5.21558 5.30965 5.39779 5.47302 5.58117 5.66525 5.69812 5.86938 5.96336 6.06898 6.09102 6.15382 6.31492 6.36599 6.37468 6.43796 6.45799 6.66377 6.76072 6.88925 6.99131 7.12166 7.61765 7.91269 7.94868 8.09089 8.35741 8.75253 9.16184 9.23263 9.70583 11.20895 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028850 B = 0.011227 C = 0.008731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.307799 B = 2493.493688 C = 3206.070546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.056 3.944 3 N -0.551 5.551 4 C 0.078 3.922 5 C -0.113 4.113 6 C 0.084 3.916 7 H 0.006 0.994 8 C -0.136 4.136 9 N -0.657 5.657 10 C 0.225 3.775 11 H 0.051 0.949 12 C -0.545 4.545 13 H 0.052 0.948 14 C 0.082 3.918 15 N -0.843 5.843 16 Si 0.880 3.120 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.279 1.279 20 C 0.051 3.949 21 H 0.055 0.945 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.010 0.990 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.328 0.672 34 H 0.256 0.744 35 H 0.067 0.933 36 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.267 -4.453 -6.487 10.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.072 4.072 3 N -0.274 5.274 4 C -0.052 4.052 5 C -0.151 4.151 6 C -0.026 4.026 7 H 0.024 0.976 8 C -0.194 4.194 9 N -0.290 5.290 10 C 0.117 3.883 11 H 0.069 0.931 12 C -0.584 4.584 13 H 0.070 0.930 14 C -0.125 4.125 15 N -0.477 5.477 16 Si 0.708 3.292 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.205 1.205 20 C -0.077 4.077 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.028 0.972 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.146 0.854 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -5.031 -4.169 -6.808 9.437 hybrid contribution -1.681 -0.185 1.286 2.125 sum -6.713 -4.354 -5.522 9.722 Atomic orbital electron populations 1.22425 0.99109 1.01466 1.01740 1.22124 0.92136 0.90970 1.01990 1.59313 1.62847 1.02085 1.03123 1.20983 0.96141 0.95653 0.92424 1.21565 1.02326 0.93194 0.97982 1.21158 0.94335 0.94118 0.93028 0.97647 1.21828 1.01714 0.97463 0.98370 1.60740 1.45351 1.22594 1.00267 1.18891 0.92907 0.82268 0.94208 0.93097 1.21108 1.24665 1.21562 0.91061 0.93026 1.24985 0.95324 0.95489 0.96725 1.70133 1.23795 1.20519 1.33285 0.86887 0.77776 0.77610 0.86912 1.20428 1.21413 1.20507 1.22767 0.98006 0.98207 0.88675 0.92585 0.93080 0.92790 0.91723 0.90971 0.92443 0.97238 0.89629 0.92253 0.94267 0.93635 0.92185 0.85445 0.93426 0.91487 0.96397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.60 9.31 37.16 0.35 -2.26 16 2 C 0.06 0.86 5.89 -3.82 -0.02 0.84 16 3 N -0.55 -10.37 4.16 -239.70 -1.00 -11.36 16 4 C 0.08 1.34 4.50 -6.55 -0.03 1.31 16 5 C -0.11 -2.08 5.18 -27.06 -0.14 -2.22 16 6 C 0.08 1.65 2.57 -68.20 -0.17 1.48 16 7 H 0.01 0.11 6.52 -51.93 -0.34 -0.22 16 8 C -0.14 -2.39 9.22 37.16 0.34 -2.04 16 9 N -0.66 -15.62 5.43 -101.89 -0.55 -16.17 16 10 C 0.22 5.61 2.04 -69.51 -0.14 5.46 16 11 H 0.05 1.46 7.19 -51.93 -0.37 1.09 16 12 C -0.54 -14.83 8.33 -34.44 -0.29 -15.12 16 13 H 0.05 1.39 7.43 -52.49 -0.39 1.00 16 14 C 0.08 2.26 5.37 -17.82 -0.10 2.16 16 15 N -0.84 -24.30 12.63 55.43 0.70 -23.60 16 16 Si 0.88 21.12 29.54 -169.99 -5.02 16.10 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.05 1.09 3.79 -4.51 -0.02 1.07 16 21 H 0.06 0.85 6.98 -51.93 -0.36 0.49 16 22 H 0.05 0.69 6.95 -51.93 -0.36 0.33 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.90 7.99 -51.93 -0.41 0.48 16 25 H 0.07 1.12 7.94 -51.93 -0.41 0.71 16 26 H 0.06 0.89 7.91 -51.93 -0.41 0.48 16 27 H 0.01 0.17 6.22 -51.93 -0.32 -0.16 16 28 H 0.09 1.84 7.19 -51.93 -0.37 1.46 16 29 H 0.06 0.94 7.69 -51.93 -0.40 0.54 16 30 H 0.04 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.33 8.06 8.51 -39.29 -0.33 7.73 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.07 1.45 7.06 -51.93 -0.37 1.08 16 36 H 0.02 0.38 6.47 -51.93 -0.34 0.05 16 LS Contribution 272.15 15.07 4.10 4.10 Total: -1.00 -28.00 272.15 -8.01 -36.01 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.02 Total: 4.23 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -0.22 Total: -9.31 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.85 Total: -51.13 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.00 -8.01 -36.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250451971.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.718 kcal (2) G-P(sol) polarization free energy of solvation -28.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds