Wall clock time and date at job start Mon Mar 30 2020 03:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47444 * 2 1 4 4 C 1.50697 * 109.47464 * 120.00382 * 2 1 3 5 5 H 1.08000 * 120.00396 * 119.99613 * 4 2 1 6 6 C 1.37879 * 119.99863 * 300.00212 * 4 2 1 7 7 N 1.31518 * 119.99761 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00121 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47382 * 89.99451 * 8 6 4 10 10 H 1.48503 * 109.47180 * 209.99529 * 8 6 4 11 11 H 1.48502 * 109.47201 * 329.99471 * 8 6 4 12 12 N 1.46903 * 109.47069 * 240.00093 * 2 1 3 13 13 C 1.46900 * 111.00026 * 303.79865 * 12 2 1 14 14 C 1.46902 * 111.00166 * 67.74788 * 12 2 1 15 15 H 1.09000 * 109.50683 * 297.31435 * 14 12 2 16 16 C 1.53121 * 109.50058 * 57.42370 * 14 12 2 17 17 C 1.53089 * 109.15721 * 177.59551 * 16 14 12 18 18 C 1.53045 * 109.29221 * 302.34191 * 17 16 14 19 19 N 1.46846 * 109.51150 * 59.18334 * 18 17 16 20 20 C 1.46853 * 111.19580 * 298.26217 * 19 18 17 21 21 H 1.08996 * 109.46891 * 66.58401 * 1 2 3 22 22 H 1.08998 * 109.46969 * 186.58631 * 1 2 3 23 23 H 1.09000 * 109.46800 * 306.58066 * 1 2 3 24 24 H 0.97005 * 119.99819 * 179.97438 * 7 6 4 25 25 H 1.09002 * 109.47544 * 183.95312 * 13 12 2 26 26 H 1.09005 * 109.47026 * 303.95545 * 13 12 2 27 27 H 1.09005 * 109.47310 * 63.94843 * 13 12 2 28 28 H 1.09004 * 109.52696 * 297.50470 * 16 14 12 29 29 H 1.09006 * 109.52212 * 57.62599 * 16 14 12 30 30 H 1.08999 * 109.49451 * 182.40465 * 17 16 14 31 31 H 1.09000 * 109.50712 * 62.29011 * 17 16 14 32 32 H 1.09005 * 109.45940 * 299.17379 * 18 17 16 33 33 H 1.08992 * 109.46234 * 179.19326 * 18 17 16 34 34 H 1.00897 * 111.00084 * 174.17263 * 19 18 17 35 35 H 1.09005 * 109.45896 * 181.75738 * 20 19 18 36 36 H 1.08994 * 109.46272 * 301.73725 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3227 -1.1197 4.0078 9 1 3.6307 -0.5442 4.4117 10 1 1.3446 -0.9491 5.1122 11 1 2.4882 -2.5655 3.7121 12 7 2.0197 -0.6925 -1.1995 13 6 1.4759 -2.0548 -1.2797 14 6 1.7055 0.0720 -2.4139 15 1 0.6241 0.1535 -2.5231 16 6 2.3163 1.4722 -2.3087 17 6 2.0358 2.2411 -3.6024 18 6 2.6106 1.4627 -4.7881 19 7 1.9942 0.1311 -4.8457 20 6 2.2899 -0.6438 -3.6337 21 1 -0.3633 0.4084 -0.9430 22 1 -0.3633 -1.0209 0.1179 23 1 -0.3633 0.6125 0.8252 24 1 0.7089 1.1612 3.4844 25 1 1.9086 -2.5688 -2.1380 26 1 1.7228 -2.5988 -0.3680 27 1 0.3927 -2.0076 -1.3926 28 1 1.8710 2.0016 -1.4664 29 1 3.3929 1.3897 -2.1590 30 1 2.5048 3.2237 -3.5506 31 1 0.9596 2.3573 -3.7308 32 1 3.6888 1.3589 -4.6660 33 1 2.3998 2.0007 -5.7123 34 1 2.2859 -0.3670 -5.6733 35 1 1.8463 -1.6358 -3.7197 36 1 3.3695 -0.7375 -3.5171 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251437300.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:14 Heat of formation + Delta-G solvation = 3.963720 kcal Electronic energy + Delta-G solvation = -15146.806831 eV Core-core repulsion = 12858.665785 eV Total energy + Delta-G solvation = -2288.141046 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.86067 -36.08204 -32.69001 -31.57249 -29.76023 -28.06535 -25.16685 -24.88449 -23.25820 -21.70182 -19.95881 -18.44926 -16.61627 -15.96971 -15.08800 -14.48399 -14.07330 -13.74797 -13.56916 -13.41228 -13.02706 -12.46322 -12.28495 -11.89958 -11.47028 -11.15609 -10.92451 -10.76085 -10.71168 -10.61107 -10.34327 -10.22268 -9.98768 -9.90435 -9.40000 -8.79282 -8.33604 -8.26437 -7.06135 -5.97351 -3.99817 3.33165 3.39366 3.42800 4.31333 4.47486 5.05258 5.19815 5.31495 5.34266 5.36480 5.62782 5.70910 5.90507 6.01053 6.10852 6.14732 6.25490 6.31810 6.38946 6.51101 6.71075 6.77010 6.82343 6.92590 6.94805 7.14948 7.20759 7.51911 7.60324 7.76065 7.89386 8.21222 8.43515 8.67569 9.06146 9.64612 11.10310 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.050611 B = 0.008210 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.105752 B = 3409.707093 C = 3614.159765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.208 3.792 3 H 0.045 0.955 4 C -0.499 4.499 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.534 5.534 13 C 0.034 3.966 14 C 0.088 3.912 15 H 0.041 0.959 16 C -0.114 4.114 17 C -0.116 4.116 18 C 0.059 3.941 19 N -0.692 5.692 20 C 0.065 3.935 21 H 0.008 0.992 22 H 0.030 0.970 23 H 0.082 0.918 24 H 0.259 0.741 25 H 0.042 0.958 26 H 0.072 0.928 27 H 0.015 0.985 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.027 0.973 33 H 0.067 0.933 34 H 0.337 0.663 35 H 0.070 0.930 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.814 -0.173 -11.431 11.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.102 3.898 3 H 0.063 0.937 4 C -0.537 4.537 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.258 5.258 13 C -0.115 4.115 14 C -0.022 4.022 15 H 0.059 0.941 16 C -0.152 4.152 17 C -0.155 4.155 18 C -0.070 4.070 19 N -0.323 5.323 20 C -0.065 4.065 21 H 0.027 0.973 22 H 0.049 0.951 23 H 0.101 0.899 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.034 0.966 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.154 0.846 35 H 0.089 0.911 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.646 0.123 -11.008 11.131 hybrid contribution 0.283 -0.610 0.712 0.979 sum 1.928 -0.487 -10.295 10.486 Atomic orbital electron populations 1.22359 1.00944 1.00250 0.99171 1.19356 0.89655 0.94908 0.85856 0.93722 1.21134 1.30437 1.12412 0.89751 0.92052 1.24925 0.95285 0.95179 0.98940 1.69909 1.37156 1.23114 1.23283 0.86539 0.78474 0.79992 0.82616 1.20760 1.21414 1.20006 1.62363 1.59305 1.02005 1.02105 1.22238 0.96480 0.91714 1.01065 1.21469 0.97480 0.93170 0.90049 0.94144 1.21656 1.01311 0.95318 0.96927 1.21587 1.01429 0.97900 0.94553 1.21911 0.95894 0.90421 0.98778 1.60239 1.63292 1.04110 1.04690 1.22002 0.98578 0.96352 0.89536 0.97333 0.95069 0.89917 0.93100 0.93950 0.90882 0.96602 0.90892 0.91847 0.91859 0.91568 0.95427 0.91455 0.84601 0.91147 0.94683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 8.05 37.16 0.30 -3.86 16 2 C 0.21 5.27 2.06 -68.86 -0.14 5.13 16 3 H 0.05 1.23 5.90 -51.93 -0.31 0.92 16 4 C -0.50 -13.76 7.89 -34.44 -0.27 -14.03 16 5 H 0.06 1.70 6.96 -52.49 -0.37 1.33 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.68 11.40 55.43 0.63 -25.05 16 8 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.53 -11.65 4.59 -228.19 -1.05 -12.69 16 13 C 0.03 0.67 8.37 60.06 0.50 1.18 16 14 C 0.09 1.66 1.81 -67.63 -0.12 1.54 16 15 H 0.04 0.84 6.52 -51.93 -0.34 0.50 16 16 C -0.11 -2.06 4.90 -26.62 -0.13 -2.19 16 17 C -0.12 -1.69 6.09 -26.66 -0.16 -1.85 16 18 C 0.06 0.77 6.55 -3.83 -0.03 0.74 16 19 N -0.69 -9.53 6.85 -113.81 -0.78 -10.31 16 20 C 0.06 1.03 5.53 -3.83 -0.02 1.01 16 21 H 0.01 0.18 6.40 -51.93 -0.33 -0.15 16 22 H 0.03 0.76 6.83 -51.93 -0.35 0.40 16 23 H 0.08 2.24 6.28 -51.93 -0.33 1.91 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.04 0.73 6.30 -51.93 -0.33 0.40 16 26 H 0.07 1.57 6.60 -51.93 -0.34 1.22 16 27 H 0.02 0.32 6.63 -51.93 -0.34 -0.03 16 28 H 0.07 1.47 6.35 -51.93 -0.33 1.14 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.34 3.78 8.90 -39.29 -0.35 3.43 16 35 H 0.07 1.09 6.43 -51.93 -0.33 0.76 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 267.52 15.07 4.03 4.03 Total: -1.00 -28.51 267.52 -8.07 -36.58 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -5.72 Total: 1.76 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -0.17 Total: -10.84 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -1.19 Total: -48.05 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.51 -8.07 -36.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251437300.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.547 kcal (2) G-P(sol) polarization free energy of solvation -28.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds