Wall clock time and date at job start Mon Mar 30 2020 03:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47444 * 2 1 4 4 C 1.50697 * 109.47464 * 120.00382 * 2 1 3 5 5 H 1.08000 * 120.00396 * 119.99613 * 4 2 1 6 6 C 1.37879 * 119.99863 * 300.00212 * 4 2 1 7 7 N 1.31518 * 119.99761 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00121 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47382 * 89.99451 * 8 6 4 10 10 H 1.48503 * 109.47180 * 209.99529 * 8 6 4 11 11 H 1.48502 * 109.47201 * 329.99471 * 8 6 4 12 12 N 1.46903 * 109.47069 * 240.00093 * 2 1 3 13 13 C 1.46900 * 111.00026 * 303.79865 * 12 2 1 14 14 C 1.46902 * 111.00166 * 67.74788 * 12 2 1 15 15 H 1.09000 * 109.50683 * 297.31435 * 14 12 2 16 16 C 1.53121 * 109.50058 * 57.42370 * 14 12 2 17 17 C 1.53089 * 109.15721 * 177.59551 * 16 14 12 18 18 C 1.53045 * 109.29221 * 302.34191 * 17 16 14 19 19 N 1.46846 * 109.51150 * 59.18334 * 18 17 16 20 20 C 1.46853 * 111.19580 * 298.26217 * 19 18 17 21 21 H 1.08996 * 109.46891 * 66.58401 * 1 2 3 22 22 H 1.08998 * 109.46969 * 186.58631 * 1 2 3 23 23 H 1.09000 * 109.46800 * 306.58066 * 1 2 3 24 24 H 0.97005 * 119.99819 * 179.97438 * 7 6 4 25 25 H 1.09002 * 109.47544 * 183.95312 * 13 12 2 26 26 H 1.09005 * 109.47026 * 303.95545 * 13 12 2 27 27 H 1.09005 * 109.47310 * 63.94843 * 13 12 2 28 28 H 1.09004 * 109.52696 * 297.50470 * 16 14 12 29 29 H 1.09006 * 109.52212 * 57.62599 * 16 14 12 30 30 H 1.08999 * 109.49451 * 182.40465 * 17 16 14 31 31 H 1.09000 * 109.50712 * 62.29011 * 17 16 14 32 32 H 1.09005 * 109.45940 * 299.17379 * 18 17 16 33 33 H 1.08992 * 109.46234 * 179.19326 * 18 17 16 34 34 H 1.00897 * 111.00084 * 174.17263 * 19 18 17 35 35 H 1.09005 * 109.45896 * 181.75738 * 20 19 18 36 36 H 1.08994 * 109.46272 * 301.73725 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3227 -1.1197 4.0078 9 1 3.6307 -0.5442 4.4117 10 1 1.3446 -0.9491 5.1122 11 1 2.4882 -2.5655 3.7121 12 7 2.0197 -0.6925 -1.1995 13 6 1.4759 -2.0548 -1.2797 14 6 1.7055 0.0720 -2.4139 15 1 0.6241 0.1535 -2.5231 16 6 2.3163 1.4722 -2.3087 17 6 2.0358 2.2411 -3.6024 18 6 2.6106 1.4627 -4.7881 19 7 1.9942 0.1311 -4.8457 20 6 2.2899 -0.6438 -3.6337 21 1 -0.3633 0.4084 -0.9430 22 1 -0.3633 -1.0209 0.1179 23 1 -0.3633 0.6125 0.8252 24 1 0.7089 1.1612 3.4844 25 1 1.9086 -2.5688 -2.1380 26 1 1.7228 -2.5988 -0.3680 27 1 0.3927 -2.0076 -1.3926 28 1 1.8710 2.0016 -1.4664 29 1 3.3929 1.3897 -2.1590 30 1 2.5048 3.2237 -3.5506 31 1 0.9596 2.3573 -3.7308 32 1 3.6888 1.3589 -4.6660 33 1 2.3998 2.0007 -5.7123 34 1 2.2859 -0.3670 -5.6733 35 1 1.8463 -1.6358 -3.7197 36 1 3.3695 -0.7375 -3.5171 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251437300.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:13 Heat of formation + Delta-G solvation = -16.687019 kcal Electronic energy + Delta-G solvation = -15147.702314 eV Core-core repulsion = 12858.665785 eV Total energy + Delta-G solvation = -2289.036529 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.33714 -37.63505 -34.68259 -32.84601 -31.46101 -29.70920 -27.28784 -26.51748 -24.59008 -23.21400 -21.49272 -20.04729 -18.34868 -17.62724 -16.89209 -16.08751 -15.41262 -15.35475 -15.21281 -14.77427 -14.57863 -14.08471 -13.66475 -13.60345 -13.24416 -12.97597 -12.68548 -12.60638 -12.39304 -12.12019 -12.04059 -12.00001 -11.76541 -11.33155 -10.98589 -10.84784 -10.43430 -9.38018 -8.83246 -8.10051 -6.19894 1.42404 1.42745 1.53193 2.43101 3.12509 3.19435 3.63218 3.87318 4.01603 4.13023 4.34738 4.48916 4.56897 4.64791 4.73815 4.77491 4.80310 4.82023 4.87642 5.00716 5.03537 5.12613 5.17632 5.19554 5.32027 5.43009 5.57015 5.71161 5.79778 6.02913 6.24279 6.49524 6.59442 6.79790 6.94198 7.48869 8.96721 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.050611 B = 0.008210 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.105752 B = 3409.707093 C = 3614.159765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.214 3.786 3 H 0.017 0.983 4 C -0.515 4.515 5 H 0.056 0.944 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.268 1.268 12 N -0.542 5.542 13 C 0.038 3.962 14 C 0.087 3.913 15 H 0.023 0.977 16 C -0.112 4.112 17 C -0.112 4.112 18 C 0.061 3.939 19 N -0.694 5.694 20 C 0.076 3.924 21 H 0.020 0.980 22 H 0.027 0.973 23 H 0.056 0.944 24 H 0.260 0.740 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.012 0.988 28 H 0.041 0.959 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.032 0.968 33 H 0.096 0.904 34 H 0.356 0.644 35 H 0.078 0.922 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.456 -0.804 -12.851 13.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.107 3.893 3 H 0.035 0.965 4 C -0.554 4.554 5 H 0.074 0.926 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.785 3.215 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.193 1.193 12 N -0.266 5.266 13 C -0.111 4.111 14 C -0.022 4.022 15 H 0.041 0.959 16 C -0.150 4.150 17 C -0.150 4.150 18 C -0.068 4.068 19 N -0.328 5.328 20 C -0.054 4.054 21 H 0.039 0.961 22 H 0.047 0.953 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.031 0.969 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.114 0.886 34 H 0.176 0.824 35 H 0.096 0.904 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.295 -0.520 -12.461 12.681 hybrid contribution 0.077 -0.382 1.109 1.175 sum 2.372 -0.902 -11.352 11.632 Atomic orbital electron populations 1.22143 1.00796 0.99420 0.98694 1.19090 0.89570 0.93607 0.87033 0.96538 1.21410 1.30526 1.12421 0.91009 0.92575 1.25702 0.95446 0.95859 1.01839 1.70039 1.37993 1.24259 1.23917 0.85540 0.77934 0.79085 0.78953 1.20303 1.21005 1.19301 1.62286 1.59385 1.02818 1.02129 1.22228 0.96434 0.90785 1.01623 1.21544 0.96696 0.93753 0.90179 0.95879 1.21609 1.00286 0.95188 0.97947 1.21572 1.01451 0.98645 0.93331 1.21952 0.95915 0.89907 0.99029 1.60175 1.63645 1.04464 1.04484 1.21795 0.98082 0.96480 0.89037 0.96067 0.95346 0.92507 0.93062 0.90655 0.92627 0.96925 0.94073 0.92647 0.90015 0.92129 0.94926 0.88565 0.82426 0.90394 0.94895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.66 8.05 71.98 0.58 -7.08 16 2 C 0.21 11.10 2.06 44.17 0.09 11.19 16 3 H 0.02 0.96 5.90 -2.39 -0.01 0.94 16 4 C -0.52 -28.87 7.89 25.60 0.20 -28.67 16 5 H 0.06 3.14 6.96 -2.91 -0.02 3.12 16 6 C 0.01 0.55 5.30 84.65 0.45 1.00 16 7 N -0.92 -53.94 11.40 21.45 0.24 -53.69 16 8 Si 0.96 44.38 29.54 68.60 2.03 46.40 16 9 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 N -0.54 -23.71 4.59 -875.86 -4.02 -27.73 16 13 C 0.04 1.48 8.37 127.69 1.07 2.55 16 14 C 0.09 3.26 1.81 44.97 0.08 3.34 16 15 H 0.02 0.95 6.52 -2.39 -0.02 0.94 16 16 C -0.11 -4.06 4.90 30.66 0.15 -3.91 16 17 C -0.11 -3.07 6.09 30.64 0.19 -2.88 16 18 C 0.06 1.38 6.55 86.33 0.57 1.95 16 19 N -0.69 -16.98 6.85 -514.00 -3.52 -20.50 16 20 C 0.08 2.25 5.53 86.32 0.48 2.72 16 21 H 0.02 0.97 6.40 -2.39 -0.02 0.96 16 22 H 0.03 1.40 6.83 -2.39 -0.02 1.38 16 23 H 0.06 3.16 6.28 -2.39 -0.01 3.15 16 24 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 25 H 0.07 2.44 6.30 -2.39 -0.02 2.43 16 26 H 0.05 2.36 6.60 -2.38 -0.02 2.35 16 27 H 0.01 0.49 6.63 -2.38 -0.02 0.47 16 28 H 0.04 1.72 6.35 -2.38 -0.02 1.70 16 29 H 0.05 2.05 8.14 -2.38 -0.02 2.04 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 32 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.36 6.64 8.90 -89.70 -0.80 5.84 16 35 H 0.08 2.19 6.43 -2.38 -0.02 2.17 16 36 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -61.34 267.52 -1.15 -62.49 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.26 Total: 12.81 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 3.85 Total: -19.79 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -7.29 Total: -101.92 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -61.34 -1.15 -62.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251437300.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.803 kcal (2) G-P(sol) polarization free energy of solvation -61.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds