Wall clock time and date at job start Mon Mar 30 2020 03:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46768 * 2 1 4 4 C 1.50701 * 109.47047 * 239.99565 * 2 1 3 5 5 H 1.07991 * 120.00056 * 239.99779 * 4 2 1 6 6 C 1.37879 * 119.99819 * 59.99918 * 4 2 1 7 7 N 1.31515 * 119.99852 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99741 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47221 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46661 * 120.00416 * 8 6 4 11 11 H 1.48503 * 109.47141 * 240.00159 * 8 6 4 12 12 N 1.46900 * 109.46976 * 119.99777 * 2 1 3 13 13 C 1.46898 * 111.00205 * 58.95335 * 12 2 1 14 14 C 1.46898 * 110.99818 * 295.00077 * 12 2 1 15 15 H 1.08994 * 109.54100 * 60.10154 * 14 12 2 16 16 C 1.53126 * 109.49996 * 180.19821 * 14 12 2 17 17 C 1.53099 * 109.15071 * 177.59181 * 16 14 12 18 18 C 1.53034 * 109.29509 * 302.33888 * 17 16 14 19 19 N 1.46847 * 109.51345 * 59.18740 * 18 17 16 20 20 C 1.46854 * 111.19790 * 298.26320 * 19 18 17 21 21 H 1.09003 * 109.47020 * 300.00338 * 1 2 3 22 22 H 1.08998 * 109.46916 * 60.00625 * 1 2 3 23 23 H 1.08998 * 109.46768 * 180.02562 * 1 2 3 24 24 H 0.97003 * 119.99676 * 179.97438 * 7 6 4 25 25 H 1.09003 * 109.46984 * 296.04695 * 13 12 2 26 26 H 1.09004 * 109.47017 * 56.04422 * 13 12 2 27 27 H 1.08996 * 109.47266 * 176.04387 * 13 12 2 28 28 H 1.08990 * 109.52264 * 297.49844 * 16 14 12 29 29 H 1.09002 * 109.52383 * 57.62629 * 16 14 12 30 30 H 1.09007 * 109.48839 * 182.39531 * 17 16 14 31 31 H 1.09009 * 109.50682 * 62.29317 * 17 16 14 32 32 H 1.09002 * 109.46271 * 299.17460 * 18 17 16 33 33 H 1.08994 * 109.46242 * 179.19760 * 18 17 16 34 34 H 1.00899 * 111.00257 * 174.16817 * 19 18 17 35 35 H 1.08993 * 109.46229 * 181.76227 * 20 19 18 36 36 H 1.09008 * 109.45803 * 301.73838 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3225 -1.1198 -4.0079 9 1 3.1474 -2.2865 -3.6036 10 1 1.1677 -1.5868 -4.8163 11 1 3.1473 -0.1861 -4.8161 12 7 2.0197 -0.6925 1.1995 13 6 1.5284 -2.0760 1.2461 14 6 1.6487 0.0393 2.4180 15 1 0.5633 0.1168 2.4804 16 6 2.1791 -0.7083 3.6446 17 6 1.8405 0.0914 4.9054 18 6 2.4460 1.4924 4.7934 19 7 1.9066 2.1663 3.6054 20 6 2.2597 1.4418 2.3778 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7095 1.1616 -3.4844 25 1 0.4420 -2.0730 1.3349 26 1 1.8167 -2.5950 0.3319 27 1 1.9617 -2.5867 2.1060 28 1 1.7134 -1.6921 3.7011 29 1 3.2602 -0.8212 3.5631 30 1 2.2527 -0.4144 5.7786 31 1 0.7580 0.1698 5.0070 32 1 3.5296 1.4138 4.7058 33 1 2.1945 2.0690 5.6835 34 1 2.2173 3.1253 3.5613 35 1 1.8731 1.9818 1.5135 36 1 3.3443 1.3633 2.3017 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251437303.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:16 Heat of formation + Delta-G solvation = 4.378662 kcal Electronic energy + Delta-G solvation = -15150.733383 eV Core-core repulsion = 12862.610331 eV Total energy + Delta-G solvation = -2288.123053 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.85503 -36.06069 -32.79910 -31.51072 -29.59542 -28.22567 -25.17481 -24.96010 -22.82948 -22.09883 -19.87500 -18.46409 -16.62494 -15.86630 -15.03381 -14.53825 -14.15800 -13.78549 -13.56638 -13.46777 -12.89977 -12.50587 -12.23951 -11.87975 -11.41249 -11.13599 -11.05507 -10.76632 -10.72370 -10.66637 -10.37393 -10.16545 -10.00675 -9.95407 -9.39230 -8.77969 -8.33542 -8.17730 -7.05712 -5.97796 -4.01066 3.31416 3.39268 3.43836 4.37596 4.47712 5.03172 5.16625 5.29327 5.31574 5.35495 5.63856 5.71968 5.90982 5.99543 6.08876 6.17536 6.26852 6.32090 6.33035 6.46799 6.62078 6.74099 6.76484 6.93187 6.96431 7.19157 7.27237 7.60048 7.62448 7.78176 7.89479 8.18638 8.44793 8.67232 9.05422 9.63703 11.09262 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.051042 B = 0.008226 C = 0.007734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.431393 B = 3403.137782 C = 3619.625866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.208 3.792 3 H 0.043 0.957 4 C -0.499 4.499 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.534 5.534 13 C 0.035 3.965 14 C 0.087 3.913 15 H 0.042 0.958 16 C -0.115 4.115 17 C -0.115 4.115 18 C 0.059 3.941 19 N -0.692 5.692 20 C 0.066 3.934 21 H 0.010 0.990 22 H 0.087 0.913 23 H 0.028 0.972 24 H 0.259 0.741 25 H 0.015 0.985 26 H 0.073 0.927 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.027 0.973 33 H 0.067 0.933 34 H 0.339 0.661 35 H 0.082 0.918 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.620 -0.235 11.408 11.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.102 3.898 3 H 0.060 0.940 4 C -0.537 4.537 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.258 5.258 13 C -0.114 4.114 14 C -0.022 4.022 15 H 0.060 0.940 16 C -0.153 4.153 17 C -0.154 4.154 18 C -0.071 4.071 19 N -0.323 5.323 20 C -0.063 4.063 21 H 0.029 0.971 22 H 0.105 0.895 23 H 0.047 0.953 24 H 0.069 0.931 25 H 0.033 0.967 26 H 0.092 0.908 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.157 0.843 35 H 0.100 0.900 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.453 -0.439 11.285 11.387 hybrid contribution 0.277 -0.156 -0.972 1.023 sum 1.731 -0.595 10.313 10.474 Atomic orbital electron populations 1.22382 1.00947 0.99249 1.00564 1.19345 0.89742 0.94744 0.86005 0.93973 1.21190 1.30353 1.12412 0.89778 0.91956 1.24931 0.95296 0.95168 0.98967 1.69904 1.37191 1.23086 1.23193 0.86491 0.78515 0.79670 0.83025 1.19797 1.21212 1.21108 1.62355 1.59598 1.01859 1.02007 1.22233 0.96759 0.91173 1.01216 1.21471 0.97519 0.92589 0.90633 0.94014 1.21697 1.01275 0.98442 0.93925 1.21568 1.01331 0.94875 0.97610 1.21889 0.96336 0.95587 0.93286 1.60243 1.64078 1.05419 1.02607 1.21976 0.98149 0.94765 0.91428 0.97101 0.89486 0.95298 0.93127 0.96678 0.90812 0.93799 0.92100 0.91860 0.92064 0.91560 0.95524 0.91490 0.84324 0.89962 0.94710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.27 8.27 37.16 0.31 -3.96 16 2 C 0.21 5.25 2.09 -68.86 -0.14 5.11 16 3 H 0.04 1.16 6.07 -51.93 -0.32 0.84 16 4 C -0.50 -13.72 7.88 -34.44 -0.27 -13.99 16 5 H 0.06 1.72 6.77 -52.49 -0.36 1.37 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -25.59 11.32 55.43 0.63 -24.97 16 8 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 N -0.53 -11.66 4.61 -228.19 -1.05 -12.72 16 13 C 0.03 0.70 8.35 60.06 0.50 1.20 16 14 C 0.09 1.65 1.81 -67.63 -0.12 1.53 16 15 H 0.04 0.87 6.45 -51.93 -0.33 0.53 16 16 C -0.12 -1.82 4.84 -26.62 -0.13 -1.95 16 17 C -0.12 -1.53 6.09 -26.66 -0.16 -1.70 16 18 C 0.06 0.76 6.55 -3.84 -0.03 0.73 16 19 N -0.69 -10.40 6.85 -113.81 -0.78 -11.18 16 20 C 0.07 1.19 5.58 -3.83 -0.02 1.17 16 21 H 0.01 0.24 6.53 -51.93 -0.34 -0.10 16 22 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 23 H 0.03 0.69 6.47 -51.93 -0.34 0.36 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.01 0.30 6.51 -51.93 -0.34 -0.04 16 26 H 0.07 1.58 6.41 -51.93 -0.33 1.25 16 27 H 0.04 0.76 6.30 -51.93 -0.33 0.44 16 28 H 0.06 0.93 6.50 -51.93 -0.34 0.59 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 32 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.34 4.40 8.90 -39.29 -0.35 4.05 16 35 H 0.08 1.67 6.35 -51.93 -0.33 1.34 16 36 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 LS Contribution 266.88 15.07 4.02 4.02 Total: -1.00 -28.42 266.88 -8.05 -36.46 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.68 Total: 2.31 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -0.16 Total: -10.37 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -1.20 Total: -48.87 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.42 -8.05 -36.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251437303.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.843 kcal (2) G-P(sol) polarization free energy of solvation -28.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds