Wall clock time and date at job start Mon Mar 30 2020 03:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46768 * 2 1 4 4 C 1.50701 * 109.47047 * 239.99565 * 2 1 3 5 5 H 1.07991 * 120.00056 * 239.99779 * 4 2 1 6 6 C 1.37879 * 119.99819 * 59.99918 * 4 2 1 7 7 N 1.31515 * 119.99852 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99741 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47221 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46661 * 120.00416 * 8 6 4 11 11 H 1.48503 * 109.47141 * 240.00159 * 8 6 4 12 12 N 1.46900 * 109.46976 * 119.99777 * 2 1 3 13 13 C 1.46898 * 111.00205 * 58.95335 * 12 2 1 14 14 C 1.46898 * 110.99818 * 295.00077 * 12 2 1 15 15 H 1.08994 * 109.54100 * 60.10154 * 14 12 2 16 16 C 1.53126 * 109.49996 * 180.19821 * 14 12 2 17 17 C 1.53099 * 109.15071 * 177.59181 * 16 14 12 18 18 C 1.53034 * 109.29509 * 302.33888 * 17 16 14 19 19 N 1.46847 * 109.51345 * 59.18740 * 18 17 16 20 20 C 1.46854 * 111.19790 * 298.26320 * 19 18 17 21 21 H 1.09003 * 109.47020 * 300.00338 * 1 2 3 22 22 H 1.08998 * 109.46916 * 60.00625 * 1 2 3 23 23 H 1.08998 * 109.46768 * 180.02562 * 1 2 3 24 24 H 0.97003 * 119.99676 * 179.97438 * 7 6 4 25 25 H 1.09003 * 109.46984 * 296.04695 * 13 12 2 26 26 H 1.09004 * 109.47017 * 56.04422 * 13 12 2 27 27 H 1.08996 * 109.47266 * 176.04387 * 13 12 2 28 28 H 1.08990 * 109.52264 * 297.49844 * 16 14 12 29 29 H 1.09002 * 109.52383 * 57.62629 * 16 14 12 30 30 H 1.09007 * 109.48839 * 182.39531 * 17 16 14 31 31 H 1.09009 * 109.50682 * 62.29317 * 17 16 14 32 32 H 1.09002 * 109.46271 * 299.17460 * 18 17 16 33 33 H 1.08994 * 109.46242 * 179.19760 * 18 17 16 34 34 H 1.00899 * 111.00257 * 174.16817 * 19 18 17 35 35 H 1.08993 * 109.46229 * 181.76227 * 20 19 18 36 36 H 1.09008 * 109.45803 * 301.73838 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3225 -1.1198 -4.0079 9 1 3.1474 -2.2865 -3.6036 10 1 1.1677 -1.5868 -4.8163 11 1 3.1473 -0.1861 -4.8161 12 7 2.0197 -0.6925 1.1995 13 6 1.5284 -2.0760 1.2461 14 6 1.6487 0.0393 2.4180 15 1 0.5633 0.1168 2.4804 16 6 2.1791 -0.7083 3.6446 17 6 1.8405 0.0914 4.9054 18 6 2.4460 1.4924 4.7934 19 7 1.9066 2.1663 3.6054 20 6 2.2597 1.4418 2.3778 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7095 1.1616 -3.4844 25 1 0.4420 -2.0730 1.3349 26 1 1.8167 -2.5950 0.3319 27 1 1.9617 -2.5867 2.1060 28 1 1.7134 -1.6921 3.7011 29 1 3.2602 -0.8212 3.5631 30 1 2.2527 -0.4144 5.7786 31 1 0.7580 0.1698 5.0070 32 1 3.5296 1.4138 4.7058 33 1 2.1945 2.0690 5.6835 34 1 2.2173 3.1253 3.5613 35 1 1.8731 1.9818 1.5135 36 1 3.3443 1.3633 2.3017 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251437303.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:16 Heat of formation + Delta-G solvation = -16.206128 kcal Electronic energy + Delta-G solvation = -15151.626007 eV Core-core repulsion = 12862.610331 eV Total energy + Delta-G solvation = -2289.015676 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.33588 -37.62625 -34.74183 -32.85839 -31.17374 -29.96272 -27.28853 -26.53778 -24.20222 -23.60878 -21.38108 -20.05813 -18.38814 -17.53381 -16.89889 -16.10824 -15.48974 -15.35496 -15.16719 -14.91908 -14.47033 -14.03797 -13.74594 -13.47486 -13.18925 -12.93560 -12.77361 -12.55857 -12.43878 -12.13607 -12.06568 -11.98301 -11.69061 -11.33244 -10.96667 -10.83086 -10.44530 -9.39703 -8.82808 -8.09799 -6.20375 1.41238 1.43027 1.54835 2.43275 3.11290 3.19130 3.63467 3.88975 4.02225 4.14844 4.32949 4.48243 4.60021 4.65874 4.71014 4.79762 4.81763 4.86755 4.91504 5.02824 5.04984 5.07929 5.19777 5.20742 5.28682 5.46276 5.57251 5.72098 5.80882 6.06434 6.22015 6.48005 6.54711 6.79963 6.94208 7.48700 8.96598 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.051042 B = 0.008226 C = 0.007734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.431393 B = 3403.137782 C = 3619.625866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.214 3.786 3 H 0.014 0.986 4 C -0.515 4.515 5 H 0.057 0.943 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.959 3.041 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.281 1.281 12 N -0.543 5.543 13 C 0.039 3.961 14 C 0.087 3.913 15 H 0.024 0.976 16 C -0.110 4.110 17 C -0.111 4.111 18 C 0.056 3.944 19 N -0.696 5.696 20 C 0.075 3.925 21 H 0.020 0.980 22 H 0.060 0.940 23 H 0.028 0.972 24 H 0.260 0.740 25 H 0.012 0.988 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.031 0.969 33 H 0.094 0.906 34 H 0.351 0.649 35 H 0.050 0.950 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.202 -0.987 12.860 13.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.107 3.893 3 H 0.032 0.968 4 C -0.553 4.553 5 H 0.075 0.925 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.207 1.207 12 N -0.267 5.267 13 C -0.109 4.109 14 C -0.022 4.022 15 H 0.042 0.958 16 C -0.148 4.148 17 C -0.150 4.150 18 C -0.073 4.073 19 N -0.328 5.328 20 C -0.054 4.054 21 H 0.039 0.961 22 H 0.079 0.921 23 H 0.047 0.953 24 H 0.070 0.930 25 H 0.030 0.970 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.113 0.887 34 H 0.170 0.830 35 H 0.069 0.931 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.040 -1.189 12.760 12.977 hybrid contribution 0.094 0.108 -1.361 1.368 sum 2.133 -1.082 11.400 11.648 Atomic orbital electron populations 1.22170 1.00846 0.98840 0.99652 1.19081 0.89615 0.93452 0.87181 0.96801 1.21455 1.30443 1.12417 0.91003 0.92481 1.25704 0.95456 0.95845 1.01856 1.70031 1.38009 1.24230 1.23868 0.85488 0.78039 0.78644 0.79336 1.19202 1.20723 1.20738 1.62283 1.59704 1.02658 1.02008 1.22220 0.96709 0.90258 1.01744 1.21553 0.96577 0.93309 0.90768 0.95834 1.21663 1.00971 0.98756 0.93374 1.21584 1.01302 0.94852 0.97227 1.22034 0.96534 0.95730 0.93014 1.60218 1.64472 1.06083 1.02063 1.21721 0.97254 0.94417 0.92043 0.96126 0.92126 0.95262 0.93043 0.96973 0.92533 0.90628 0.91395 0.91973 0.88989 0.91987 0.95060 0.88732 0.83032 0.93114 0.95487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.91 8.27 71.98 0.60 -7.31 16 2 C 0.21 11.08 2.09 44.17 0.09 11.17 16 3 H 0.01 0.81 6.07 -2.39 -0.01 0.79 16 4 C -0.51 -28.75 7.88 25.60 0.20 -28.55 16 5 H 0.06 3.18 6.77 -2.92 -0.02 3.16 16 6 C 0.01 0.54 5.30 84.65 0.45 0.99 16 7 N -0.92 -53.75 11.32 21.45 0.24 -53.51 16 8 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 9 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 N -0.54 -23.74 4.61 -875.87 -4.04 -27.77 16 13 C 0.04 1.54 8.35 127.69 1.07 2.60 16 14 C 0.09 3.25 1.81 44.97 0.08 3.33 16 15 H 0.02 0.98 6.45 -2.39 -0.02 0.96 16 16 C -0.11 -3.21 4.84 30.67 0.15 -3.06 16 17 C -0.11 -2.59 6.09 30.64 0.19 -2.40 16 18 C 0.06 1.28 6.55 86.32 0.57 1.84 16 19 N -0.70 -19.97 6.85 -513.99 -3.52 -23.49 16 20 C 0.08 2.74 5.58 86.32 0.48 3.23 16 21 H 0.02 0.95 6.53 -2.39 -0.02 0.94 16 22 H 0.06 3.40 6.07 -2.39 -0.01 3.38 16 23 H 0.03 1.43 6.47 -2.39 -0.02 1.41 16 24 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 25 H 0.01 0.47 6.51 -2.39 -0.02 0.46 16 26 H 0.06 2.41 6.41 -2.39 -0.02 2.39 16 27 H 0.08 2.48 6.30 -2.39 -0.02 2.47 16 28 H 0.07 1.88 6.50 -2.39 -0.02 1.86 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.35 8.64 8.90 -89.69 -0.80 7.84 16 35 H 0.05 2.14 6.35 -2.39 -0.02 2.13 16 36 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -61.10 266.88 -1.16 -62.26 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.26 Total: 14.39 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 3.87 Total: -18.16 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -7.31 Total: -104.77 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -61.10 -1.16 -62.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251437303.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.053 kcal (2) G-P(sol) polarization free energy of solvation -61.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds