Wall clock time and date at job start Mon Mar 30 2020 03:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47212 * 2 1 4 4 C 1.50703 * 109.47309 * 120.00046 * 2 1 3 5 5 H 1.08000 * 120.00054 * 115.86176 * 4 2 1 6 6 C 1.37877 * 119.99886 * 295.85865 * 4 2 1 7 7 N 1.31512 * 120.00377 * 353.91898 * 6 4 2 8 8 Si 1.86801 * 119.99881 * 173.91222 * 6 4 2 9 9 H 1.48502 * 109.47288 * 180.02562 * 8 6 4 10 10 H 1.48490 * 109.47477 * 300.00505 * 8 6 4 11 11 H 1.48507 * 109.46898 * 60.00416 * 8 6 4 12 12 N 1.46901 * 109.47016 * 240.00226 * 2 1 3 13 13 C 1.46845 * 110.99651 * 296.45536 * 12 2 1 14 14 C 1.53039 * 109.51896 * 174.16045 * 13 12 2 15 15 C 1.53112 * 109.28058 * 59.18672 * 14 13 12 16 16 C 1.53121 * 109.15777 * 302.34177 * 15 14 13 17 17 C 1.46852 * 110.99748 * 172.25435 * 12 2 1 18 18 H 1.08998 * 109.46442 * 65.82100 * 17 12 2 19 19 C 1.52997 * 109.46023 * 305.84920 * 17 12 2 20 20 N 1.46898 * 109.47470 * 305.30161 * 19 17 12 21 21 H 1.09007 * 109.47452 * 306.14201 * 1 2 3 22 22 H 1.08997 * 109.47915 * 66.14456 * 1 2 3 23 23 H 1.08998 * 109.47174 * 186.14889 * 1 2 3 24 24 H 0.97003 * 119.99737 * 354.58464 * 7 6 4 25 25 H 1.08994 * 109.46916 * 294.17623 * 13 12 2 26 26 H 1.09002 * 109.46124 * 54.15397 * 13 12 2 27 27 H 1.08997 * 109.50679 * 299.23739 * 14 13 12 28 28 H 1.09008 * 109.53596 * 179.14232 * 14 13 12 29 29 H 1.08996 * 109.52796 * 182.43977 * 15 14 13 30 30 H 1.08998 * 109.57524 * 62.27378 * 15 14 13 31 31 H 1.08998 * 109.50750 * 297.71136 * 16 15 14 32 32 H 1.08999 * 109.53957 * 177.61146 * 16 15 14 33 33 H 1.09007 * 109.47048 * 65.30025 * 19 17 12 34 34 H 1.09001 * 109.47583 * 185.29925 * 19 17 12 35 35 H 1.00908 * 111.00326 * 184.62252 * 20 19 17 36 36 H 1.00905 * 111.00166 * 308.57708 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5970 -1.6259 1.1328 6 6 1.7711 -0.1917 2.4809 7 7 1.1891 0.9819 2.5976 8 14 2.2438 -1.1558 4.0095 9 1 1.8577 -0.3862 5.2194 10 1 1.5382 -2.4624 4.0085 11 1 3.7110 -1.3857 4.0157 12 7 2.0196 -0.6925 -1.1995 13 6 1.6191 -2.1052 -1.1918 14 6 2.0183 -2.7571 -2.5176 15 6 3.5334 -2.6379 -2.7036 16 6 3.9303 -1.1597 -2.6593 17 6 3.4758 -0.5541 -1.3294 18 1 3.9650 -1.0756 -0.5067 19 6 3.8526 0.9282 -1.2890 20 7 3.0954 1.6542 -2.3174 21 1 -0.3634 0.6061 0.8299 22 1 -0.3635 0.4156 -0.9398 23 1 -0.3633 -1.0217 0.1101 24 1 1.0148 1.5174 1.8078 25 1 2.1171 -2.6195 -0.3698 26 1 0.5390 -2.1758 -1.0631 27 1 1.5099 -2.2523 -3.3390 28 1 1.7348 -3.8096 -2.5062 29 1 3.8167 -3.0624 -3.6667 30 1 4.0429 -3.1759 -1.9043 31 1 3.4521 -0.6296 -3.4830 32 1 5.0129 -1.0701 -2.7487 33 1 3.6151 1.3369 -0.3067 34 1 4.9203 1.0371 -1.4793 35 1 3.3811 2.6210 -2.3619 36 1 3.1885 1.2079 -3.2176 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251483416.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:36 Heat of formation + Delta-G solvation = -27.620687 kcal Electronic energy + Delta-G solvation = -15532.421672 eV Core-core repulsion = 13242.911024 eV Total energy + Delta-G solvation = -2289.510648 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.42498 -36.36948 -35.42645 -33.54523 -31.05918 -30.03048 -26.87994 -26.21952 -24.98655 -22.24891 -21.71083 -20.44074 -18.39284 -17.08124 -16.85047 -16.09068 -15.62356 -15.36594 -15.20866 -14.85457 -14.39026 -14.12906 -13.77002 -13.35951 -13.10286 -12.90012 -12.56061 -12.55041 -12.35162 -12.00403 -11.97640 -11.88950 -11.55451 -11.10755 -10.89340 -10.75796 -10.39200 -9.35001 -8.76359 -8.41820 -6.24965 1.48210 1.54473 1.73787 2.56398 3.23324 3.33092 3.89280 3.94402 3.99269 4.10298 4.36176 4.45689 4.55744 4.59772 4.72601 4.79261 4.87752 4.93320 4.95327 5.07953 5.11659 5.17361 5.17749 5.29949 5.35563 5.52768 5.54051 5.58959 6.05861 6.16896 6.36366 6.67271 6.71016 6.75983 6.82347 7.54996 8.83124 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030276 B = 0.011628 C = 0.010586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.605771 B = 2407.465163 C = 2644.296977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.200 3.800 3 H 0.022 0.978 4 C -0.620 4.620 5 H 0.036 0.964 6 C -0.022 4.022 7 N -0.934 5.934 8 Si 1.100 2.900 9 H -0.285 1.285 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.501 5.501 13 C 0.058 3.942 14 C -0.108 4.108 15 C -0.114 4.114 16 C -0.105 4.105 17 C 0.091 3.909 18 H 0.009 0.991 19 C 0.080 3.920 20 N -0.835 5.835 21 H 0.030 0.970 22 H 0.039 0.961 23 H 0.030 0.970 24 H 0.261 0.739 25 H 0.006 0.994 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.340 0.660 36 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.542 -4.600 -11.032 13.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.092 3.908 3 H 0.040 0.960 4 C -0.659 4.659 5 H 0.054 0.946 6 C -0.222 4.222 7 N -0.572 5.572 8 Si 0.924 3.076 9 H -0.210 1.210 10 H -0.203 1.203 11 H -0.203 1.203 12 N -0.225 5.225 13 C -0.071 4.071 14 C -0.146 4.146 15 C -0.151 4.151 16 C -0.143 4.143 17 C -0.019 4.019 18 H 0.027 0.973 19 C -0.051 4.051 20 N -0.367 5.367 21 H 0.049 0.951 22 H 0.058 0.942 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.025 0.975 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.153 0.847 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.598 -4.548 -9.366 11.382 hybrid contribution 1.178 -0.028 -0.772 1.409 sum 5.777 -4.576 -10.138 12.534 Atomic orbital electron populations 1.21669 0.98703 0.99008 0.98401 1.19157 0.91334 0.94025 0.86256 0.96049 1.22786 1.37841 1.10672 0.94630 0.94556 1.26841 0.94065 0.97166 1.04101 1.70879 1.41304 1.11611 1.33361 0.83146 0.76601 0.74666 0.73195 1.21008 1.20303 1.20260 1.62286 1.10551 1.11116 1.38527 1.21979 0.99224 0.89469 0.96411 1.21570 0.96536 0.99958 0.96515 1.21525 0.95604 0.96024 1.01983 1.21619 1.00293 0.96183 0.96204 1.21496 0.89260 0.94643 0.96470 0.97274 1.21597 0.94202 0.93833 0.95464 1.58399 1.62936 1.05679 1.09731 0.95082 0.94224 0.95043 0.92850 0.97528 0.92869 0.91161 0.90868 0.89523 0.93517 0.90500 0.90889 0.94521 0.94604 0.84726 0.83943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.98 8.55 71.98 0.62 -5.37 16 2 C 0.20 10.20 1.64 44.17 0.07 10.27 16 3 H 0.02 1.21 5.28 -2.39 -0.01 1.20 16 4 C -0.62 -34.66 7.16 25.60 0.18 -34.48 16 5 H 0.04 2.07 5.86 -2.91 -0.02 2.06 16 6 C -0.02 -1.27 5.27 84.66 0.45 -0.83 16 7 N -0.93 -56.98 12.91 21.45 0.28 -56.70 16 8 Si 1.10 51.43 29.91 68.60 2.05 53.48 16 9 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 12 N -0.50 -21.26 4.17 -850.39 -3.55 -24.81 16 13 C 0.06 2.30 4.79 86.33 0.41 2.72 16 14 C -0.11 -3.19 6.09 30.64 0.19 -3.01 16 15 C -0.11 -3.01 6.00 30.67 0.18 -2.82 16 16 C -0.11 -2.95 5.17 30.65 0.16 -2.80 16 17 C 0.09 3.46 1.91 44.94 0.09 3.54 16 18 H 0.01 0.42 7.23 -2.39 -0.02 0.40 16 19 C 0.08 2.93 5.76 86.30 0.50 3.43 16 20 N -0.84 -26.47 9.35 -186.72 -1.75 -28.22 16 21 H 0.03 1.66 6.27 -2.38 -0.01 1.64 16 22 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.03 1.53 6.67 -2.39 -0.02 1.51 16 24 H 0.26 16.14 5.99 -92.71 -0.56 15.59 16 25 H 0.01 0.29 6.41 -2.39 -0.02 0.28 16 26 H 0.05 2.22 6.26 -2.39 -0.01 2.20 16 27 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 2.01 6.56 -2.39 -0.02 2.00 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.04 1.66 6.48 -2.38 -0.02 1.65 16 34 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.34 9.25 9.08 -89.69 -0.81 8.43 16 36 H 0.35 9.39 7.11 -89.69 -0.64 8.75 16 Total: -1.00 -63.75 266.17 -0.29 -64.04 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -0.16 Total: 21.55 kcal Atomic # 6 Polarization: -32.18 SS G_CDS: 2.84 Total: -29.34 kcal Atomic # 7 Polarization: -104.71 SS G_CDS: -5.02 Total: -109.73 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 2.05 Total: 53.48 kcal Total: -63.75 -0.29 -64.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251483416.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.416 kcal (2) G-P(sol) polarization free energy of solvation -63.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds