Wall clock time and date at job start Mon Mar 30 2020 03:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47166 * 2 1 4 4 C 1.50704 * 109.47100 * 240.00070 * 2 1 3 5 5 H 1.08002 * 120.00000 * 240.00330 * 4 2 1 6 6 C 1.37873 * 119.99975 * 59.72458 * 4 2 1 7 7 N 1.31514 * 120.00207 * 0.28073 * 6 4 2 8 8 Si 1.86803 * 120.00125 * 180.27230 * 6 4 2 9 9 H 1.48496 * 109.46764 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47068 * 120.00340 * 8 6 4 11 11 H 1.48496 * 109.47380 * 240.00444 * 8 6 4 12 12 N 1.46901 * 109.47026 * 120.00381 * 2 1 3 13 13 C 1.46847 * 111.00054 * 61.27455 * 12 2 1 14 14 C 1.53041 * 109.52463 * 174.16183 * 13 12 2 15 15 C 1.53126 * 109.27484 * 59.18159 * 14 13 12 16 16 C 1.53118 * 109.15746 * 302.34366 * 15 14 13 17 17 C 1.46853 * 110.99800 * 297.06806 * 12 2 1 18 18 H 1.08994 * 109.46249 * 65.82416 * 17 12 2 19 19 C 1.52999 * 109.45689 * 305.85510 * 17 12 2 20 20 N 1.46904 * 109.46648 * 177.11049 * 19 17 12 21 21 H 1.09004 * 109.46574 * 63.81192 * 1 2 3 22 22 H 1.09002 * 109.47336 * 183.81009 * 1 2 3 23 23 H 1.08994 * 109.47150 * 303.81503 * 1 2 3 24 24 H 0.96995 * 120.00737 * 179.97438 * 7 6 4 25 25 H 1.08999 * 109.46077 * 294.17799 * 13 12 2 26 26 H 1.09003 * 109.46233 * 54.14517 * 13 12 2 27 27 H 1.09003 * 109.50213 * 179.11939 * 14 13 12 28 28 H 1.08996 * 109.50183 * 299.20155 * 14 13 12 29 29 H 1.08993 * 109.52652 * 62.25224 * 15 14 13 30 30 H 1.09006 * 109.51706 * 182.44364 * 15 14 13 31 31 H 1.09003 * 109.50415 * 177.59855 * 16 15 14 32 32 H 1.08998 * 109.50816 * 297.67642 * 16 15 14 33 33 H 1.09002 * 109.47081 * 297.10196 * 19 17 12 34 34 H 1.08997 * 109.47622 * 57.11236 * 19 17 12 35 35 H 1.00902 * 110.99792 * 174.76093 * 20 19 17 36 36 H 1.00892 * 111.00128 * 298.71342 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6946 -0.2427 -2.4827 7 7 0.9386 0.8267 -2.6034 8 14 2.3110 -1.1277 -4.0080 9 1 3.1365 -2.2939 -3.6038 10 1 1.1526 -1.5960 -4.8106 11 1 3.1332 -0.1969 -4.8220 12 7 2.0197 -0.6926 1.1994 13 6 1.5739 -2.0916 1.2181 14 6 2.2194 -2.8184 2.4001 15 6 1.8208 -2.1187 3.7025 16 6 2.2534 -0.6514 3.6374 17 6 1.6069 0.0126 2.4196 18 1 0.5220 -0.0315 2.5152 19 6 2.0524 1.4740 2.3391 20 7 1.5796 2.1962 3.5278 21 1 -0.3632 0.4536 -0.9222 22 1 -0.3634 -1.0254 0.0683 23 1 -0.3633 0.5719 0.8538 24 1 0.7012 1.1560 -3.4843 25 1 0.4891 -2.1258 1.3193 26 1 1.8672 -2.5787 0.2881 27 1 1.8761 -3.8527 2.4228 28 1 3.3038 -2.7971 2.2921 29 1 0.7397 -2.1744 3.8299 30 1 2.3132 -2.6068 4.5436 31 1 1.9345 -0.1374 4.5442 32 1 3.3385 -0.5954 3.5499 33 1 3.1405 1.5203 2.2949 34 1 1.6324 1.9332 1.4442 35 1 1.9325 3.1414 3.5409 36 1 0.5721 2.1857 3.5804 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251483420.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:39 Heat of formation + Delta-G solvation = -5.625560 kcal Electronic energy + Delta-G solvation = -15295.331213 eV Core-core repulsion = 13006.774345 eV Total energy + Delta-G solvation = -2288.556868 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.84951 -34.33777 -34.14053 -31.84996 -29.75518 -28.10431 -25.31318 -24.51457 -23.37014 -20.93339 -20.05162 -18.44245 -16.18919 -15.78806 -14.93939 -14.63655 -14.23667 -13.89948 -13.49845 -13.38562 -12.69504 -12.48842 -11.99662 -11.78113 -11.43749 -11.21670 -11.00880 -10.81061 -10.69354 -10.45679 -10.20868 -10.05856 -10.00036 -9.71549 -9.41472 -8.80885 -8.45201 -8.14899 -7.04759 -6.00981 -4.04250 3.29557 3.37607 3.42247 4.41260 4.73942 5.18784 5.30279 5.40028 5.44384 5.55977 5.72783 5.89384 6.03806 6.15374 6.20550 6.35256 6.41908 6.50647 6.54439 6.63654 6.70712 6.72799 6.88239 6.91941 6.95193 7.18377 7.40278 7.57796 7.68570 7.76930 7.86874 8.17591 8.44271 8.66848 9.02697 9.60816 11.05922 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034271 B = 0.010332 C = 0.008639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.815847 B = 2709.472861 C = 3240.372305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.206 3.794 3 H 0.044 0.956 4 C -0.498 4.498 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.527 5.527 13 C 0.064 3.936 14 C -0.119 4.119 15 C -0.120 4.120 16 C -0.099 4.099 17 C 0.090 3.910 18 H 0.028 0.972 19 C 0.063 3.937 20 N -0.851 5.851 21 H 0.088 0.912 22 H 0.027 0.973 23 H 0.005 0.995 24 H 0.259 0.741 25 H 0.021 0.979 26 H 0.083 0.917 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.336 0.664 36 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.195 -1.503 9.379 9.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.100 3.900 3 H 0.062 0.938 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.252 5.252 13 C -0.064 4.064 14 C -0.156 4.156 15 C -0.157 4.157 16 C -0.137 4.137 17 C -0.019 4.019 18 H 0.046 0.954 19 C -0.067 4.067 20 N -0.379 5.379 21 H 0.107 0.893 22 H 0.046 0.954 23 H 0.024 0.976 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.101 0.899 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.148 0.852 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.050 -1.951 9.622 9.874 hybrid contribution -1.199 0.252 -1.623 2.033 sum -0.149 -1.699 8.000 8.179 Atomic orbital electron populations 1.22399 1.01185 0.98636 1.00950 1.19365 0.89535 0.94922 0.86156 0.93794 1.21208 1.30201 1.12462 0.89762 0.91856 1.24929 0.95272 0.95170 0.98998 1.69885 1.37196 1.23210 1.23212 0.86489 0.78502 0.79728 0.82992 1.19722 1.21236 1.21100 1.62212 1.59795 1.01359 1.01820 1.21927 0.96156 0.90173 0.98130 1.21653 1.01282 0.97770 0.94944 1.21589 1.00121 0.96664 0.97358 1.21488 1.00622 0.94141 0.97456 1.21401 0.96330 0.92678 0.91502 0.95448 1.21916 1.00640 0.93789 0.90391 1.58717 1.14993 1.20403 1.43808 0.89319 0.95374 0.97603 0.93132 0.96100 0.89875 0.92875 0.91694 0.93069 0.92932 0.91601 0.92048 0.90792 0.94145 0.85220 0.85471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 8.33 37.16 0.31 -3.89 16 2 C 0.21 5.13 1.93 -68.86 -0.13 5.00 16 3 H 0.04 1.19 5.97 -51.93 -0.31 0.88 16 4 C -0.50 -13.53 7.86 -34.44 -0.27 -13.80 16 5 H 0.06 1.73 6.61 -52.49 -0.35 1.39 16 6 C 0.06 1.56 5.29 -17.82 -0.09 1.47 16 7 N -0.90 -25.37 11.29 55.43 0.63 -24.74 16 8 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.53 -11.35 4.49 -220.13 -0.99 -12.33 16 13 C 0.06 1.30 4.71 -3.83 -0.02 1.28 16 14 C -0.12 -1.96 6.09 -26.64 -0.16 -2.12 16 15 C -0.12 -1.82 6.00 -26.61 -0.16 -1.98 16 16 C -0.10 -1.62 5.23 -26.65 -0.14 -1.76 16 17 C 0.09 1.69 1.62 -67.72 -0.11 1.58 16 18 H 0.03 0.55 6.77 -51.93 -0.35 0.19 16 19 C 0.06 1.12 5.86 -3.82 -0.02 1.09 16 20 N -0.85 -12.08 8.97 -10.37 -0.09 -12.17 16 21 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 22 H 0.03 0.66 6.37 -51.93 -0.33 0.33 16 23 H 0.00 0.11 6.80 -51.93 -0.35 -0.24 16 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.02 0.43 6.57 -51.93 -0.34 0.09 16 26 H 0.08 1.81 6.21 -51.93 -0.32 1.49 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.02 7.71 -51.93 -0.40 0.62 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.04 0.81 6.09 -51.93 -0.32 0.49 16 35 H 0.34 4.11 9.08 -39.29 -0.36 3.75 16 36 H 0.33 4.47 9.05 -39.30 -0.36 4.11 16 LS Contribution 268.88 15.07 4.05 4.05 Total: -1.00 -27.77 268.88 -7.99 -35.76 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.77 Total: 6.25 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -0.80 Total: -13.13 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -0.46 Total: -49.25 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.77 -7.99 -35.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251483420.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.139 kcal (2) G-P(sol) polarization free energy of solvation -27.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds