Wall clock time and date at job start Mon Mar 30 2020 03:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47166 * 2 1 4 4 C 1.50704 * 109.47100 * 240.00070 * 2 1 3 5 5 H 1.08002 * 120.00000 * 240.00330 * 4 2 1 6 6 C 1.37873 * 119.99975 * 59.72458 * 4 2 1 7 7 N 1.31514 * 120.00207 * 0.28073 * 6 4 2 8 8 Si 1.86803 * 120.00125 * 180.27230 * 6 4 2 9 9 H 1.48496 * 109.46764 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47068 * 120.00340 * 8 6 4 11 11 H 1.48496 * 109.47380 * 240.00444 * 8 6 4 12 12 N 1.46901 * 109.47026 * 120.00381 * 2 1 3 13 13 C 1.46847 * 111.00054 * 61.27455 * 12 2 1 14 14 C 1.53041 * 109.52463 * 174.16183 * 13 12 2 15 15 C 1.53126 * 109.27484 * 59.18159 * 14 13 12 16 16 C 1.53118 * 109.15746 * 302.34366 * 15 14 13 17 17 C 1.46853 * 110.99800 * 297.06806 * 12 2 1 18 18 H 1.08994 * 109.46249 * 65.82416 * 17 12 2 19 19 C 1.52999 * 109.45689 * 305.85510 * 17 12 2 20 20 N 1.46904 * 109.46648 * 177.11049 * 19 17 12 21 21 H 1.09004 * 109.46574 * 63.81192 * 1 2 3 22 22 H 1.09002 * 109.47336 * 183.81009 * 1 2 3 23 23 H 1.08994 * 109.47150 * 303.81503 * 1 2 3 24 24 H 0.96995 * 120.00737 * 179.97438 * 7 6 4 25 25 H 1.08999 * 109.46077 * 294.17799 * 13 12 2 26 26 H 1.09003 * 109.46233 * 54.14517 * 13 12 2 27 27 H 1.09003 * 109.50213 * 179.11939 * 14 13 12 28 28 H 1.08996 * 109.50183 * 299.20155 * 14 13 12 29 29 H 1.08993 * 109.52652 * 62.25224 * 15 14 13 30 30 H 1.09006 * 109.51706 * 182.44364 * 15 14 13 31 31 H 1.09003 * 109.50415 * 177.59855 * 16 15 14 32 32 H 1.08998 * 109.50816 * 297.67642 * 16 15 14 33 33 H 1.09002 * 109.47081 * 297.10196 * 19 17 12 34 34 H 1.08997 * 109.47622 * 57.11236 * 19 17 12 35 35 H 1.00902 * 110.99792 * 174.76093 * 20 19 17 36 36 H 1.00892 * 111.00128 * 298.71342 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6946 -0.2427 -2.4827 7 7 0.9386 0.8267 -2.6034 8 14 2.3110 -1.1277 -4.0080 9 1 3.1365 -2.2939 -3.6038 10 1 1.1526 -1.5960 -4.8106 11 1 3.1332 -0.1969 -4.8220 12 7 2.0197 -0.6926 1.1994 13 6 1.5739 -2.0916 1.2181 14 6 2.2194 -2.8184 2.4001 15 6 1.8208 -2.1187 3.7025 16 6 2.2534 -0.6514 3.6374 17 6 1.6069 0.0126 2.4196 18 1 0.5220 -0.0315 2.5152 19 6 2.0524 1.4740 2.3391 20 7 1.5796 2.1962 3.5278 21 1 -0.3632 0.4536 -0.9222 22 1 -0.3634 -1.0254 0.0683 23 1 -0.3633 0.5719 0.8538 24 1 0.7012 1.1560 -3.4843 25 1 0.4891 -2.1258 1.3193 26 1 1.8672 -2.5787 0.2881 27 1 1.8761 -3.8527 2.4228 28 1 3.3038 -2.7971 2.2921 29 1 0.7397 -2.1744 3.8299 30 1 2.3132 -2.6068 4.5436 31 1 1.9345 -0.1374 4.5442 32 1 3.3385 -0.5954 3.5499 33 1 3.1405 1.5203 2.2949 34 1 1.6324 1.9332 1.4442 35 1 1.9325 3.1414 3.5409 36 1 0.5721 2.1857 3.5804 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251483420.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:39 Heat of formation + Delta-G solvation = -25.372175 kcal Electronic energy + Delta-G solvation = -15296.187490 eV Core-core repulsion = 13006.774345 eV Total energy + Delta-G solvation = -2289.413146 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.43529 -36.10796 -35.49681 -33.73251 -31.14453 -29.92920 -27.36096 -25.97990 -24.96468 -22.57675 -21.54978 -20.03436 -18.22023 -17.33632 -16.63402 -16.15938 -15.86035 -15.43341 -14.99983 -14.88011 -14.33810 -14.08356 -13.72389 -13.43167 -13.03755 -12.91777 -12.74045 -12.55159 -12.52434 -12.26550 -11.95950 -11.73544 -11.46676 -11.25052 -10.97349 -10.72287 -10.48021 -9.53599 -8.78394 -8.11264 -6.21266 1.39681 1.41941 1.53461 2.42193 3.17652 3.25423 3.82977 3.99650 4.09853 4.19955 4.30845 4.50254 4.55411 4.67747 4.72983 4.79581 4.87724 4.98756 5.06492 5.07404 5.17095 5.21934 5.25051 5.35146 5.41439 5.59224 5.60486 5.74611 5.83229 6.16457 6.22597 6.52299 6.62151 6.84857 6.94518 7.47907 8.94846 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034271 B = 0.010332 C = 0.008639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.815847 B = 2709.472861 C = 3240.372305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.212 3.788 3 H 0.017 0.983 4 C -0.513 4.513 5 H 0.056 0.944 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.957 3.043 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.535 5.535 13 C 0.064 3.936 14 C -0.112 4.112 15 C -0.116 4.116 16 C -0.091 4.091 17 C 0.090 3.910 18 H 0.018 0.982 19 C 0.073 3.927 20 N -0.838 5.838 21 H 0.061 0.939 22 H 0.026 0.974 23 H 0.019 0.981 24 H 0.260 0.740 25 H 0.013 0.987 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.010 0.990 35 H 0.350 0.650 36 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.523 -2.407 10.711 10.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.105 3.895 3 H 0.035 0.965 4 C -0.551 4.551 5 H 0.074 0.926 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.783 3.217 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.260 5.260 13 C -0.064 4.064 14 C -0.149 4.149 15 C -0.153 4.153 16 C -0.129 4.129 17 C -0.019 4.019 18 H 0.036 0.964 19 C -0.058 4.058 20 N -0.368 5.368 21 H 0.080 0.920 22 H 0.045 0.955 23 H 0.038 0.962 24 H 0.069 0.931 25 H 0.031 0.969 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.028 0.972 35 H 0.163 0.837 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.380 -2.852 10.978 11.425 hybrid contribution -1.310 0.569 -1.997 2.455 sum 0.069 -2.283 8.981 9.267 Atomic orbital electron populations 1.22184 1.00978 0.98350 1.00070 1.19104 0.89503 0.93630 0.87239 0.96513 1.21467 1.30209 1.12394 0.91046 0.92560 1.25674 0.95472 0.95868 1.01778 1.70007 1.38005 1.24308 1.23824 0.85520 0.78035 0.78707 0.79456 1.19211 1.20784 1.20760 1.62152 1.59921 1.02126 1.01773 1.21937 0.95976 0.89515 0.98959 1.21608 1.00754 0.98671 0.93904 1.21584 1.00650 0.95643 0.97427 1.21436 1.00012 0.95068 0.96412 1.21502 0.95987 0.93197 0.91251 0.96363 1.21682 0.99949 0.93650 0.90500 1.58654 1.15616 1.21213 1.41351 0.92007 0.95485 0.96198 0.93078 0.96864 0.92263 0.90559 0.91965 0.92704 0.90040 0.90143 0.92535 0.91559 0.97194 0.83689 0.84617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.77 8.33 71.98 0.60 -7.17 16 2 C 0.21 10.82 1.93 44.17 0.09 10.91 16 3 H 0.02 0.96 5.97 -2.39 -0.01 0.94 16 4 C -0.51 -28.41 7.86 25.60 0.20 -28.21 16 5 H 0.06 3.13 6.61 -2.91 -0.02 3.11 16 6 C 0.01 0.57 5.29 84.65 0.45 1.01 16 7 N -0.92 -53.20 11.29 21.45 0.24 -52.96 16 8 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 9 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 N -0.54 -23.09 4.49 -850.37 -3.82 -26.91 16 13 C 0.06 2.56 4.71 86.33 0.41 2.96 16 14 C -0.11 -3.42 6.09 30.65 0.19 -3.24 16 15 C -0.12 -3.13 6.00 30.68 0.18 -2.94 16 16 C -0.09 -2.76 5.23 30.65 0.16 -2.60 16 17 C 0.09 3.27 1.62 44.94 0.07 3.34 16 18 H 0.02 0.71 6.77 -2.39 -0.02 0.69 16 19 C 0.07 2.58 5.86 86.30 0.51 3.09 16 20 N -0.84 -22.45 8.97 -186.71 -1.68 -24.13 16 21 H 0.06 3.41 5.97 -2.38 -0.01 3.40 16 22 H 0.03 1.29 6.37 -2.39 -0.02 1.28 16 23 H 0.02 0.88 6.80 -2.39 -0.02 0.86 16 24 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 25 H 0.01 0.54 6.57 -2.39 -0.02 0.52 16 26 H 0.06 2.61 6.21 -2.39 -0.01 2.59 16 27 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.08 2.22 7.71 -2.39 -0.02 2.21 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.01 0.41 6.09 -2.39 -0.01 0.39 16 35 H 0.35 7.96 9.08 -89.69 -0.81 7.14 16 36 H 0.34 8.54 9.05 -89.70 -0.81 7.73 16 Total: -1.00 -59.52 268.88 -0.92 -60.44 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -0.55 Total: 20.27 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: 2.85 Total: -22.84 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -5.25 Total: -104.00 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -59.52 -0.92 -60.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251483420.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.069 kcal (2) G-P(sol) polarization free energy of solvation -59.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds