Wall clock time and date at job start Mon Mar 30 2020 02:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 108.86219 * 2 1 4 4 C 1.53703 * 108.95677 * 241.29678 * 2 1 3 5 5 N 1.48066 * 112.46637 * 197.88209 * 4 2 1 6 6 C 1.46898 * 110.99846 * 192.18768 * 5 4 2 7 7 C 1.44642 * 113.77991 * 318.31149 * 5 4 2 8 8 C 1.54206 * 108.82920 * 94.33537 * 7 5 4 9 9 H 1.09001 * 108.96514 * 41.69492 * 8 7 5 10 10 C 1.50699 * 108.96330 * 160.45336 * 8 7 5 11 11 H 1.08002 * 120.00516 * 121.23049 * 10 8 7 12 12 C 1.37884 * 119.99783 * 301.23349 * 10 8 7 13 13 N 1.31514 * 119.99707 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 119.99956 * 180.27458 * 12 10 8 15 15 H 1.48503 * 109.47407 * 269.72718 * 14 12 10 16 16 H 1.48505 * 109.47281 * 29.72474 * 14 12 10 17 17 H 1.48501 * 109.47274 * 149.72572 * 14 12 10 18 18 N 1.40021 * 111.99949 * 281.07322 * 8 7 5 19 19 C 1.46906 * 110.99821 * 188.14162 * 18 8 7 20 20 C 1.47906 * 114.07259 * 61.85421 * 18 8 7 21 21 H 1.08999 * 109.46968 * 301.29066 * 1 2 3 22 22 H 1.08995 * 109.47059 * 61.29117 * 1 2 3 23 23 H 1.08999 * 109.46532 * 181.28698 * 1 2 3 24 24 H 1.09000 * 108.87859 * 318.64599 * 4 2 1 25 25 H 1.08995 * 108.88678 * 77.20493 * 4 2 1 26 26 H 1.09000 * 109.47210 * 60.00575 * 6 5 4 27 27 H 1.09007 * 109.47013 * 179.97438 * 6 5 4 28 28 H 1.08993 * 109.47261 * 300.00232 * 6 5 4 29 29 H 1.08994 * 109.65534 * 334.48711 * 7 5 4 30 30 H 1.09007 * 109.52051 * 214.09529 * 7 5 4 31 31 H 0.97005 * 119.99656 * 179.97438 * 13 12 10 32 32 H 1.09000 * 109.46725 * 60.00166 * 19 18 8 33 33 H 1.08995 * 109.46965 * 180.02562 * 19 18 8 34 34 H 1.09005 * 109.47073 * 300.00553 * 19 18 8 35 35 H 1.08997 * 109.63271 * 39.74716 * 20 18 8 36 36 H 1.08992 * 109.63228 * 160.14978 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8824 1.0315 0.0000 4 6 2.0294 -0.6982 -1.2750 5 7 3.4447 -1.1205 -1.1716 6 6 3.9733 -1.5159 -2.4839 7 6 4.3011 -0.1406 -0.5403 8 6 4.4090 -0.4685 0.9626 9 1 4.5162 -1.5465 1.0832 10 6 5.6308 0.2108 1.5255 11 1 5.5308 0.9162 2.3372 12 6 6.8764 -0.0683 1.0043 13 7 6.9981 -0.9269 0.0155 14 14 8.3917 0.7678 1.7071 15 1 8.6467 2.0314 0.9698 16 1 8.1691 1.0695 3.1440 17 1 9.5642 -0.1327 1.5663 18 7 3.2819 -0.0408 1.6750 19 6 3.4872 -0.1871 3.1222 20 6 2.0199 -0.6851 1.2509 21 1 -0.3633 0.5337 0.8782 22 1 -0.3633 0.4936 -0.9013 23 1 -0.3632 -1.0274 0.0231 24 1 1.4117 -1.5768 -1.4609 25 1 1.9280 -0.0120 -2.1158 26 1 3.9099 -0.6717 -3.1705 27 1 5.0146 -1.8211 -2.3792 28 1 3.3881 -2.3477 -2.8757 29 1 3.8752 0.8546 -0.6674 30 1 5.2917 -0.1765 -0.9939 31 1 7.8744 -1.1230 -0.3515 32 1 4.3436 0.4127 3.4301 33 1 2.5967 0.1517 3.6515 34 1 3.6735 -1.2347 3.3587 35 1 2.1988 -1.7403 1.0444 36 1 1.2755 -0.5876 2.0409 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251572006.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:33 Heat of formation + Delta-G solvation = 0.499231 kcal Electronic energy + Delta-G solvation = -15454.194226 eV Core-core repulsion = 13165.902949 eV Total energy + Delta-G solvation = -2288.291277 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41473 -36.95169 -35.68297 -34.00339 -30.19998 -28.40928 -27.68904 -26.56130 -25.28334 -23.29925 -21.21807 -20.36650 -18.45329 -17.09019 -16.70265 -16.11785 -15.91580 -15.70877 -14.99327 -14.43281 -14.18498 -14.01699 -13.65881 -13.19320 -13.05042 -13.00579 -12.84325 -12.70431 -12.38393 -12.20359 -11.95707 -11.85663 -11.66159 -11.41025 -11.32657 -10.78624 -10.46135 -8.89015 -8.75560 -8.06117 -6.20176 1.42498 1.43025 1.53194 2.43367 3.10803 3.34790 3.49617 3.96971 4.17095 4.31364 4.47829 4.59627 4.62915 4.68130 4.75232 4.81476 4.83589 4.87095 4.94598 4.99152 5.03482 5.12845 5.23528 5.25015 5.36580 5.44931 5.53962 5.75169 5.78060 6.18644 6.49724 6.53928 6.60795 6.97521 7.09941 7.51701 8.97036 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034522 B = 0.011517 C = 0.009167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.887222 B = 2430.621459 C = 3053.801709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.089 4.089 3 H 0.056 0.944 4 C 0.069 3.931 5 N -0.574 5.574 6 C 0.044 3.956 7 C 0.089 3.911 8 C 0.246 3.754 9 H -0.054 1.054 10 C -0.528 4.528 11 H 0.063 0.937 12 C 0.012 3.988 13 N -0.911 5.911 14 Si 0.957 3.043 15 H -0.276 1.276 16 H -0.268 1.268 17 H -0.285 1.285 18 N -0.560 5.560 19 C 0.048 3.952 20 C 0.076 3.924 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.028 0.972 26 H 0.019 0.981 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.005 0.995 30 H 0.076 0.924 31 H 0.259 0.741 32 H 0.061 0.939 33 H 0.075 0.925 34 H -0.001 1.001 35 H 0.018 0.982 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.116 1.001 -1.136 10.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.108 4.108 3 H 0.074 0.926 4 C -0.058 4.058 5 N -0.299 5.299 6 C -0.104 4.104 7 C -0.040 4.040 8 C 0.136 3.864 9 H -0.036 1.036 10 C -0.567 4.567 11 H 0.081 0.919 12 C -0.187 4.187 13 N -0.550 5.550 14 Si 0.783 3.217 15 H -0.202 1.202 16 H -0.193 1.193 17 H -0.211 1.211 18 N -0.284 5.284 19 C -0.100 4.100 20 C -0.051 4.051 21 H 0.085 0.915 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.046 0.954 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.023 0.977 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.018 0.982 35 H 0.037 0.963 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.012 0.988 -1.067 10.117 hybrid contribution 1.407 0.048 -0.207 1.423 sum -8.605 1.036 -1.274 8.760 Atomic orbital electron populations 1.21742 0.91950 1.02490 1.02561 1.20980 0.97155 0.99183 0.93477 0.92581 1.22504 0.88233 0.98518 0.96573 1.60793 1.02639 1.44350 1.22130 1.22219 0.99999 0.99299 0.88870 1.21823 0.95844 0.89824 0.96463 1.17779 0.87136 0.90878 0.90627 1.03633 1.21717 0.91796 1.25093 1.18099 0.91903 1.25737 1.01711 0.95795 0.95450 1.70062 1.23968 1.34852 1.26147 0.85571 0.78905 0.78215 0.79002 1.20224 1.19291 1.21100 1.59347 1.03764 1.60536 1.04742 1.22183 1.01591 0.98126 0.88090 1.21807 0.91041 0.95316 0.96959 0.91533 0.91703 0.91786 0.90458 0.95387 0.96276 0.93322 0.90562 0.97660 0.90576 0.93142 0.92042 0.90668 0.98208 0.96349 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.81 71.98 0.63 -2.36 16 2 C -0.09 -2.93 2.25 -11.27 -0.03 -2.96 16 3 H 0.06 2.11 7.23 -2.39 -0.02 2.09 16 4 C 0.07 2.38 4.86 86.32 0.42 2.79 16 5 N -0.57 -24.90 4.20 -921.24 -3.87 -28.76 16 6 C 0.04 1.69 9.40 127.69 1.20 2.89 16 7 C 0.09 4.52 4.62 87.13 0.40 4.92 16 8 C 0.25 13.09 1.59 45.82 0.07 13.16 16 9 H -0.05 -3.33 8.07 -2.39 -0.02 -3.35 16 10 C -0.53 -29.71 7.76 25.60 0.20 -29.51 16 11 H 0.06 3.48 5.97 -2.91 -0.02 3.46 16 12 C 0.01 0.67 5.18 84.66 0.44 1.11 16 13 N -0.91 -52.94 11.26 21.45 0.24 -52.70 16 14 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 15 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 18 N -0.56 -25.35 4.15 -916.87 -3.81 -29.16 16 19 C 0.05 1.96 9.06 127.69 1.16 3.12 16 20 C 0.08 2.84 4.85 85.39 0.41 3.26 16 21 H 0.07 1.40 8.09 -2.39 -0.02 1.38 16 22 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.08 2.36 7.97 -2.39 -0.02 2.34 16 25 H 0.03 0.92 8.00 -2.39 -0.02 0.90 16 26 H 0.02 0.67 8.10 -2.39 -0.02 0.66 16 27 H 0.05 2.09 7.86 -2.38 -0.02 2.07 16 28 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.01 0.26 6.93 -2.39 -0.02 0.25 16 30 H 0.08 4.30 4.99 -2.38 -0.01 4.29 16 31 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 32 H 0.06 2.68 5.80 -2.39 -0.01 2.67 16 33 H 0.07 2.48 7.87 -2.39 -0.02 2.47 16 34 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 35 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 36 H 0.08 2.59 7.26 -2.39 -0.02 2.58 16 Total: -1.00 -62.73 271.42 0.54 -62.19 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 1.03 Total: 5.88 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 4.91 Total: -3.57 kcal Atomic # 7 Polarization: -103.19 SS G_CDS: -7.43 Total: -110.62 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -62.73 0.54 -62.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251572006.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.690 kcal (2) G-P(sol) polarization free energy of solvation -62.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds