Wall clock time and date at job start Mon Mar 30 2020 02:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 108.93857 * 2 1 4 4 C 1.50803 * 108.95630 * 118.75345 * 2 1 3 5 5 N 1.47908 * 108.49582 * 213.22817 * 4 2 1 6 6 C 1.46900 * 110.99964 * 153.77167 * 5 4 2 7 7 C 1.40013 * 114.06784 * 280.05964 * 5 4 2 8 8 C 1.54208 * 112.07706 * 61.81476 * 7 5 4 9 9 H 1.08994 * 109.57294 * 41.12440 * 8 7 5 10 10 C 1.50698 * 109.57322 * 161.38016 * 8 7 5 11 11 H 1.08000 * 120.00317 * 55.17264 * 10 8 7 12 12 C 1.37881 * 119.99781 * 235.17506 * 10 8 7 13 13 N 1.31514 * 119.99786 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99929 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46850 * 89.99872 * 14 12 10 16 16 H 1.48496 * 109.46925 * 209.99727 * 14 12 10 17 17 H 1.48494 * 109.47262 * 330.00021 * 14 12 10 18 18 N 1.44575 * 108.85412 * 281.19049 * 8 7 5 19 19 C 1.46904 * 110.99990 * 220.34601 * 18 8 7 20 20 C 1.48067 * 113.86127 * 94.22551 * 18 8 7 21 21 H 1.09002 * 109.47286 * 301.24580 * 1 2 3 22 22 H 1.08999 * 109.46943 * 181.24784 * 1 2 3 23 23 H 1.09002 * 109.47184 * 61.24734 * 1 2 3 24 24 H 1.08995 * 109.63037 * 332.92868 * 4 2 1 25 25 H 1.09000 * 109.63180 * 93.32439 * 4 2 1 26 26 H 1.08996 * 109.47021 * 59.99747 * 6 5 4 27 27 H 1.09000 * 109.46907 * 180.02562 * 6 5 4 28 28 H 1.09003 * 109.46973 * 300.00061 * 6 5 4 29 29 H 1.09000 * 108.95781 * 182.48019 * 7 5 4 30 30 H 1.09001 * 108.96263 * 301.14219 * 7 5 4 31 31 H 0.97002 * 119.99604 * 179.97438 * 13 12 10 32 32 H 1.09004 * 109.46812 * 66.18293 * 19 18 8 33 33 H 1.08996 * 109.47414 * 186.18728 * 19 18 8 34 34 H 1.08998 * 109.47241 * 306.19063 * 19 18 8 35 35 H 1.09003 * 108.88184 * 197.54790 * 20 18 8 36 36 H 1.09001 * 108.88517 * 79.09078 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8837 1.0310 0.0000 4 6 2.0198 -0.6861 1.2504 5 7 3.2819 -0.0423 1.6750 6 6 3.4873 -0.1899 3.1221 7 6 4.4088 -0.4695 0.9622 8 6 4.3023 -0.1420 -0.5409 9 1 3.8791 0.8543 -0.6684 10 6 5.6721 -0.1927 -1.1670 11 1 6.2762 -1.0830 -1.0731 12 6 6.1543 0.8976 -1.8597 13 7 5.4184 1.9816 -1.9744 14 14 7.8525 0.8351 -2.6351 15 1 7.7446 0.3147 -4.0218 16 1 8.4346 2.2009 -2.6628 17 1 8.7284 -0.0602 -1.8373 18 7 3.4446 -1.1197 -1.1724 19 6 3.9732 -1.5139 -2.4852 20 6 2.0293 -0.6972 -1.2755 21 1 -0.3634 0.5331 0.8786 22 1 -0.3633 -1.0274 0.0224 23 1 -0.3634 0.4943 -0.9010 24 1 1.2742 -0.5859 2.0391 25 1 2.1951 -1.7419 1.0441 26 1 3.5321 -1.2488 3.3765 27 1 4.4220 0.2927 3.4075 28 1 2.6597 0.2773 3.6560 29 1 5.2926 0.0212 1.3698 30 1 4.5167 -1.5474 1.0831 31 1 5.7578 2.7488 -2.4614 32 1 4.9155 -2.0457 -2.3526 33 1 3.2559 -2.1647 -2.9852 34 1 4.1407 -0.6239 -3.0917 35 1 1.4116 -1.5757 -1.4622 36 1 1.9262 -0.0109 -2.1161 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251572019.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:35 Heat of formation + Delta-G solvation = -7.597832 kcal Electronic energy + Delta-G solvation = -15436.626841 eV Core-core repulsion = 13147.984448 eV Total energy + Delta-G solvation = -2288.642392 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.40272 -36.99852 -35.63825 -33.96036 -30.43761 -28.28302 -27.70409 -26.71128 -25.20609 -23.21927 -21.34602 -20.27841 -18.43410 -17.09077 -16.52912 -16.30039 -16.11923 -15.70815 -14.97001 -14.58152 -14.03431 -13.95172 -13.73949 -13.17229 -13.10713 -12.96993 -12.84924 -12.71261 -12.67335 -12.31442 -11.83725 -11.76343 -11.55885 -11.37815 -11.25513 -10.94917 -10.68348 -8.95314 -8.66841 -8.17992 -6.27886 1.37916 1.39076 1.49772 2.38191 3.05818 3.27234 3.57259 4.01164 4.16186 4.32826 4.43759 4.60124 4.67918 4.71210 4.77673 4.81225 4.84157 4.89042 4.96291 5.01986 5.03117 5.06404 5.24411 5.29976 5.37925 5.45760 5.53520 5.61202 5.74159 6.01138 6.45458 6.59253 6.63436 6.98194 7.00026 7.40731 8.90365 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033801 B = 0.011082 C = 0.009615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.177136 B = 2526.012647 C = 2911.282428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 H 0.043 0.957 4 C 0.086 3.914 5 N -0.576 5.576 6 C 0.035 3.965 7 C 0.105 3.895 8 C 0.203 3.797 9 H 0.022 0.978 10 C -0.521 4.521 11 H 0.051 0.949 12 C 0.021 3.979 13 N -0.924 5.924 14 Si 0.954 3.046 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.265 1.265 18 N -0.563 5.563 19 C 0.076 3.924 20 C 0.069 3.931 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.053 0.947 24 H 0.090 0.910 25 H 0.035 0.965 26 H 0.026 0.974 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.041 0.959 30 H -0.002 1.002 31 H 0.262 0.738 32 H 0.054 0.946 33 H 0.055 0.945 34 H -0.006 1.006 35 H 0.075 0.925 36 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.335 -4.883 4.922 10.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.109 4.109 3 H 0.062 0.938 4 C -0.041 4.041 5 N -0.300 5.300 6 C -0.113 4.113 7 C -0.025 4.025 8 C 0.096 3.904 9 H 0.040 0.960 10 C -0.561 4.561 11 H 0.069 0.931 12 C -0.179 4.179 13 N -0.563 5.563 14 Si 0.779 3.221 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.190 1.190 18 N -0.288 5.288 19 C -0.073 4.073 20 C -0.058 4.058 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.072 0.928 24 H 0.108 0.892 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.016 0.984 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.013 0.987 35 H 0.094 0.906 36 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -7.365 -4.630 5.048 10.058 hybrid contribution 1.310 0.271 -1.026 1.686 sum -6.054 -4.359 4.022 8.475 Atomic orbital electron populations 1.21744 0.92122 1.02667 1.02243 1.20951 0.97054 0.98890 0.93987 0.93811 1.21736 0.90229 0.95679 0.96446 1.59263 1.03985 1.61677 1.05106 1.22332 1.02461 0.99448 0.87021 1.20847 0.91021 0.95057 0.95605 1.19126 0.91072 0.90586 0.89627 0.96015 1.21270 1.01554 0.99754 1.33497 0.93106 1.25734 1.00896 0.94948 0.96322 1.70067 1.38808 1.04771 1.42638 0.85616 0.80081 0.77406 0.78988 1.19925 1.20939 1.18959 1.61258 1.01735 1.44093 1.21707 1.21728 0.98787 0.97367 0.89370 1.22420 0.89815 0.97615 0.95994 0.91220 0.91158 0.92779 0.89165 0.94649 0.95584 0.92330 0.89941 0.94056 0.98354 0.92894 0.92717 0.92669 0.98692 0.90629 0.98188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.81 71.98 0.63 -2.68 16 2 C -0.09 -3.19 2.25 -11.27 -0.03 -3.22 16 3 H 0.04 1.89 7.23 -2.39 -0.02 1.88 16 4 C 0.09 2.92 4.84 85.40 0.41 3.33 16 5 N -0.58 -22.78 4.32 -938.77 -4.06 -26.84 16 6 C 0.03 1.07 9.45 127.69 1.21 2.28 16 7 C 0.11 4.90 4.43 87.96 0.39 5.29 16 8 C 0.20 10.61 2.28 45.01 0.10 10.71 16 9 H 0.02 1.32 5.73 -2.39 -0.01 1.30 16 10 C -0.52 -28.99 5.68 25.60 0.15 -28.84 16 11 H 0.05 2.82 7.46 -2.91 -0.02 2.80 16 12 C 0.02 1.17 5.32 84.66 0.45 1.62 16 13 N -0.92 -55.13 12.61 21.45 0.27 -54.86 16 14 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 15 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 18 N -0.56 -26.06 4.20 -900.17 -3.78 -29.84 16 19 C 0.08 3.43 8.48 127.69 1.08 4.51 16 20 C 0.07 2.76 4.79 86.31 0.41 3.17 16 21 H 0.07 1.56 8.08 -2.39 -0.02 1.54 16 22 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.09 2.47 7.38 -2.39 -0.02 2.45 16 25 H 0.04 1.27 7.59 -2.39 -0.02 1.25 16 26 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 1.81 7.89 -2.39 -0.02 1.79 16 28 H 0.08 2.10 8.07 -2.39 -0.02 2.08 16 29 H 0.04 2.03 7.69 -2.39 -0.02 2.01 16 30 H 0.00 -0.07 8.07 -2.39 -0.02 -0.09 16 31 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 32 H 0.05 2.51 6.93 -2.38 -0.02 2.50 16 33 H 0.05 2.10 8.03 -2.39 -0.02 2.08 16 34 H -0.01 -0.29 7.61 -2.39 -0.02 -0.31 16 35 H 0.08 2.59 7.97 -2.39 -0.02 2.58 16 36 H 0.00 -0.01 8.03 -2.39 -0.02 -0.03 16 Total: -1.00 -63.00 274.84 0.29 -62.71 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 1.02 Total: 6.58 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 4.81 Total: -3.82 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -7.56 Total: -111.54 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -63.00 0.29 -62.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251572019.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.109 kcal (2) G-P(sol) polarization free energy of solvation -62.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds