Wall clock time and date at job start Mon Mar 30 2020 02:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47874 * 2 1 4 4 N 1.46903 * 109.46964 * 120.00360 * 2 1 3 5 5 C 1.46957 * 110.99975 * 304.99186 * 4 2 1 6 6 C 1.53050 * 109.36566 * 183.18815 * 5 4 2 7 7 H 1.08999 * 109.50763 * 181.62037 * 6 5 4 8 8 C 1.53003 * 109.48920 * 61.56483 * 6 5 4 9 9 N 1.46954 * 109.36603 * 301.59580 * 6 5 4 10 10 C 1.46957 * 110.87658 * 59.32050 * 9 6 5 11 11 C 1.46961 * 111.00065 * 68.79000 * 4 2 1 12 12 H 1.09001 * 109.48787 * 296.77753 * 11 4 2 13 13 C 1.50696 * 109.48909 * 56.84427 * 11 4 2 14 14 H 1.08007 * 119.99939 * 35.16758 * 13 11 4 15 15 C 1.37878 * 119.99959 * 215.16078 * 13 11 4 16 16 N 1.31518 * 119.99894 * 174.66113 * 15 13 11 17 17 Si 1.86792 * 119.99992 * 354.66713 * 15 13 11 18 18 H 1.48496 * 109.47508 * 94.32323 * 17 15 13 19 19 H 1.48506 * 109.47029 * 214.31866 * 17 15 13 20 20 H 1.48496 * 109.47148 * 334.31877 * 17 15 13 21 21 H 1.09000 * 109.46788 * 59.99884 * 1 2 3 22 22 H 1.09003 * 109.46836 * 300.00507 * 1 2 3 23 23 H 1.08987 * 109.47430 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47312 * 239.99646 * 2 1 3 25 25 H 1.09007 * 109.47026 * 53.29884 * 3 2 1 26 26 H 1.09001 * 109.47624 * 173.29355 * 3 2 1 27 27 H 1.08997 * 109.47343 * 293.30169 * 3 2 1 28 28 H 1.09001 * 109.48717 * 303.15702 * 5 4 2 29 29 H 1.09004 * 109.48697 * 63.21938 * 5 4 2 30 30 H 1.08998 * 109.47071 * 300.10973 * 8 6 5 31 31 H 1.09000 * 109.46800 * 60.10655 * 8 6 5 32 32 H 1.08994 * 109.47073 * 180.10569 * 8 6 5 33 33 H 1.00896 * 110.99871 * 295.45719 * 9 6 5 34 34 H 1.09001 * 109.48717 * 180.71085 * 10 9 6 35 35 H 1.09004 * 109.49183 * 60.65062 * 10 9 6 36 36 H 0.97001 * 120.00067 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.4534 -0.0987 2.4185 6 6 2.0478 -0.7944 3.6453 7 1 1.6079 -0.3753 4.5503 8 6 3.5628 -0.5820 3.6686 9 7 1.7554 -2.2330 3.5791 10 6 2.3216 -2.8270 2.3600 11 6 1.7272 -2.1313 1.1331 12 1 0.6479 -2.2826 1.1166 13 6 2.3358 -2.7109 -0.1177 14 1 3.2790 -2.3335 -0.4843 15 6 1.6885 -3.7231 -0.7941 16 7 2.1645 -4.1570 -1.9408 17 14 0.1355 -4.4782 -0.0819 18 1 -1.0535 -3.7972 -0.6542 19 1 0.0882 -5.9236 -0.4193 20 1 0.1373 -4.3143 1.3940 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 -1.0275 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.5823 1.9897 0.8240 26 1 3.1235 1.4447 0.1200 27 1 1.7781 1.9205 -0.9438 28 1 1.6940 0.9640 2.4509 29 1 0.3709 -0.2269 2.4166 30 1 4.0023 -1.0006 2.7632 31 1 3.7794 0.4851 3.7177 32 1 3.9861 -1.0792 4.5413 33 1 0.7625 -2.4032 3.6367 34 1 2.0810 -3.8896 2.3276 35 1 3.4041 -2.6988 2.3619 36 1 1.7090 -4.8689 -2.4168 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251576243.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:47 Heat of formation + Delta-G solvation = 4.739175 kcal Electronic energy + Delta-G solvation = -15672.272904 eV Core-core repulsion = 13384.165485 eV Total energy + Delta-G solvation = -2288.107420 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.19473 -35.29242 -33.07567 -31.02264 -30.05861 -27.55006 -26.66454 -24.84178 -23.99378 -21.04459 -19.78370 -18.13862 -16.90969 -15.88343 -15.02292 -14.43433 -14.23812 -13.92304 -13.21894 -13.21602 -12.73075 -12.54479 -12.44110 -11.75845 -11.57723 -11.37056 -11.18869 -11.08910 -10.70957 -10.55020 -10.49231 -10.35836 -10.09172 -9.88573 -9.60205 -9.30366 -8.71117 -7.73299 -7.21432 -6.14486 -4.11509 3.19593 3.30342 3.31459 4.33696 4.67577 4.93517 5.20650 5.51262 5.56610 5.58064 5.74829 5.80044 5.97582 6.06255 6.08525 6.14903 6.26231 6.29976 6.30925 6.35044 6.50357 6.53124 6.57393 6.64775 6.82942 6.93929 7.07052 7.24323 7.40865 7.75348 7.94154 8.05400 8.13347 8.62678 8.97123 9.49642 10.98314 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026996 B = 0.014766 C = 0.011790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.943655 B = 1895.793013 C = 2374.280770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.081 3.919 3 C -0.138 4.138 4 N -0.513 5.513 5 C 0.016 3.984 6 C 0.087 3.913 7 H 0.068 0.932 8 C -0.133 4.133 9 N -0.694 5.694 10 C 0.062 3.938 11 C 0.153 3.847 12 H 0.002 0.998 13 C -0.499 4.499 14 H 0.081 0.919 15 C 0.074 3.926 16 N -0.894 5.894 17 Si 0.868 3.132 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.263 1.263 21 H 0.049 0.951 22 H 0.044 0.956 23 H 0.054 0.946 24 H 0.104 0.896 25 H 0.041 0.959 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.021 0.979 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.327 0.673 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.569 7.576 7.432 10.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.027 4.027 3 C -0.196 4.196 4 N -0.238 5.238 5 C -0.115 4.115 6 C -0.023 4.023 7 H 0.086 0.914 8 C -0.191 4.191 9 N -0.322 5.322 10 C -0.068 4.068 11 C 0.045 3.955 12 H 0.020 0.980 13 C -0.538 4.538 14 H 0.099 0.901 15 C -0.128 4.128 16 N -0.532 5.532 17 Si 0.695 3.305 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.188 1.188 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.122 0.878 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.143 0.857 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.521 7.299 7.717 10.730 hybrid contribution -2.566 -0.261 -0.515 2.630 sum -4.087 7.038 7.202 10.868 Atomic orbital electron populations 1.22397 0.99298 1.01575 1.00455 1.21586 0.91357 0.93750 0.96013 1.21834 1.01527 0.96205 1.00054 1.62398 1.57437 1.04247 0.99708 1.22886 0.96114 0.99364 0.93108 1.21542 0.97063 0.88271 0.95456 0.91362 1.21692 0.94685 1.00144 1.02545 1.60920 1.18025 1.12260 1.41006 1.22489 1.00512 0.97629 0.86124 1.20354 0.93928 0.84776 0.96471 0.98044 1.20806 1.08345 1.18087 1.06582 0.90082 1.24976 0.96912 0.96629 0.94309 1.69895 1.40524 1.28626 1.14124 0.87015 0.84189 0.78964 0.80282 1.20713 1.21239 1.18803 0.93145 0.93741 0.92717 0.87765 0.93966 0.92208 0.93280 0.91517 0.96088 0.90625 0.93460 0.93399 0.85725 0.91655 0.90388 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.26 8.45 37.16 0.31 -2.95 16 2 C 0.08 1.58 2.73 -67.71 -0.19 1.40 16 3 C -0.14 -2.21 8.92 37.15 0.33 -1.88 16 4 N -0.51 -10.32 3.79 -219.94 -0.83 -11.16 16 5 C 0.02 0.27 4.19 -3.77 -0.02 0.25 16 6 C 0.09 1.43 3.69 -67.66 -0.25 1.18 16 7 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 8 C -0.13 -2.12 8.84 37.16 0.33 -1.79 16 9 N -0.69 -12.66 6.70 -106.59 -0.71 -13.37 16 10 C 0.06 1.31 5.39 -3.77 -0.02 1.29 16 11 C 0.15 3.47 1.19 -68.81 -0.08 3.39 16 12 H 0.00 0.05 4.19 -51.93 -0.22 -0.17 16 13 C -0.50 -13.34 7.36 -34.44 -0.25 -13.60 16 14 H 0.08 2.41 8.06 -52.48 -0.42 1.99 16 15 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 16 N -0.89 -26.45 13.96 55.43 0.77 -25.67 16 17 Si 0.87 21.00 26.58 -169.99 -4.52 16.48 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.26 -6.09 6.06 56.52 0.34 -5.75 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.04 0.74 6.41 -51.93 -0.33 0.41 16 23 H 0.05 1.13 6.71 -51.94 -0.35 0.78 16 24 H 0.10 2.39 6.69 -51.93 -0.35 2.04 16 25 H 0.04 0.62 6.79 -51.92 -0.35 0.26 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.06 6.44 -51.93 -0.33 0.72 16 29 H 0.02 0.37 6.42 -51.93 -0.33 0.04 16 30 H 0.07 1.39 5.94 -51.93 -0.31 1.08 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.33 5.76 8.89 -39.29 -0.35 5.41 16 34 H 0.07 1.45 7.08 -51.93 -0.37 1.08 16 35 H 0.08 1.71 6.35 -51.93 -0.33 1.38 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 264.67 15.07 3.99 3.99 Total: -1.00 -27.75 264.67 -7.01 -34.76 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.77 Total: 5.71 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 0.07 Total: -10.75 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.77 Total: -50.20 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.52 Total: 16.48 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.75 -7.01 -34.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251576243.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.502 kcal (2) G-P(sol) polarization free energy of solvation -27.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds