Wall clock time and date at job start Mon Mar 30 2020 02:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47874 * 2 1 4 4 N 1.46903 * 109.46964 * 120.00360 * 2 1 3 5 5 C 1.46957 * 110.99975 * 304.99186 * 4 2 1 6 6 C 1.53050 * 109.36566 * 183.18815 * 5 4 2 7 7 H 1.08999 * 109.50763 * 181.62037 * 6 5 4 8 8 C 1.53003 * 109.48920 * 61.56483 * 6 5 4 9 9 N 1.46954 * 109.36603 * 301.59580 * 6 5 4 10 10 C 1.46957 * 110.87658 * 59.32050 * 9 6 5 11 11 C 1.46961 * 111.00065 * 68.79000 * 4 2 1 12 12 H 1.09001 * 109.48787 * 296.77753 * 11 4 2 13 13 C 1.50696 * 109.48909 * 56.84427 * 11 4 2 14 14 H 1.08007 * 119.99939 * 35.16758 * 13 11 4 15 15 C 1.37878 * 119.99959 * 215.16078 * 13 11 4 16 16 N 1.31518 * 119.99894 * 174.66113 * 15 13 11 17 17 Si 1.86792 * 119.99992 * 354.66713 * 15 13 11 18 18 H 1.48496 * 109.47508 * 94.32323 * 17 15 13 19 19 H 1.48506 * 109.47029 * 214.31866 * 17 15 13 20 20 H 1.48496 * 109.47148 * 334.31877 * 17 15 13 21 21 H 1.09000 * 109.46788 * 59.99884 * 1 2 3 22 22 H 1.09003 * 109.46836 * 300.00507 * 1 2 3 23 23 H 1.08987 * 109.47430 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47312 * 239.99646 * 2 1 3 25 25 H 1.09007 * 109.47026 * 53.29884 * 3 2 1 26 26 H 1.09001 * 109.47624 * 173.29355 * 3 2 1 27 27 H 1.08997 * 109.47343 * 293.30169 * 3 2 1 28 28 H 1.09001 * 109.48717 * 303.15702 * 5 4 2 29 29 H 1.09004 * 109.48697 * 63.21938 * 5 4 2 30 30 H 1.08998 * 109.47071 * 300.10973 * 8 6 5 31 31 H 1.09000 * 109.46800 * 60.10655 * 8 6 5 32 32 H 1.08994 * 109.47073 * 180.10569 * 8 6 5 33 33 H 1.00896 * 110.99871 * 295.45719 * 9 6 5 34 34 H 1.09001 * 109.48717 * 180.71085 * 10 9 6 35 35 H 1.09004 * 109.49183 * 60.65062 * 10 9 6 36 36 H 0.97001 * 120.00067 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.4534 -0.0987 2.4185 6 6 2.0478 -0.7944 3.6453 7 1 1.6079 -0.3753 4.5503 8 6 3.5628 -0.5820 3.6686 9 7 1.7554 -2.2330 3.5791 10 6 2.3216 -2.8270 2.3600 11 6 1.7272 -2.1313 1.1331 12 1 0.6479 -2.2826 1.1166 13 6 2.3358 -2.7109 -0.1177 14 1 3.2790 -2.3335 -0.4843 15 6 1.6885 -3.7231 -0.7941 16 7 2.1645 -4.1570 -1.9408 17 14 0.1355 -4.4782 -0.0819 18 1 -1.0535 -3.7972 -0.6542 19 1 0.0882 -5.9236 -0.4193 20 1 0.1373 -4.3143 1.3940 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 -1.0275 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.5823 1.9897 0.8240 26 1 3.1235 1.4447 0.1200 27 1 1.7781 1.9205 -0.9438 28 1 1.6940 0.9640 2.4509 29 1 0.3709 -0.2269 2.4166 30 1 4.0023 -1.0006 2.7632 31 1 3.7794 0.4851 3.7177 32 1 3.9861 -1.0792 4.5413 33 1 0.7625 -2.4032 3.6367 34 1 2.0810 -3.8896 2.3276 35 1 3.4041 -2.6988 2.3619 36 1 1.7090 -4.8689 -2.4168 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251576243.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:47 Heat of formation + Delta-G solvation = -16.095602 kcal Electronic energy + Delta-G solvation = -15673.176368 eV Core-core repulsion = 13384.165485 eV Total energy + Delta-G solvation = -2289.010883 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.74935 -36.76999 -35.06089 -32.79152 -31.55003 -29.11675 -28.06132 -26.56217 -25.59426 -22.76604 -21.28723 -19.70068 -18.98720 -17.40213 -16.57851 -16.22682 -15.84576 -15.51945 -14.81872 -14.74681 -14.54768 -14.07366 -13.91973 -13.30648 -13.04380 -12.99383 -12.66158 -12.52645 -12.45473 -12.13376 -12.04574 -11.82784 -11.74416 -11.67890 -11.33318 -11.07850 -10.80860 -9.30806 -8.79767 -8.30774 -6.30288 1.25362 1.30169 1.38865 2.28873 2.97356 3.26759 3.47869 4.09930 4.18384 4.21036 4.35607 4.39051 4.51005 4.54711 4.69113 4.74937 4.78998 4.86479 4.89418 4.94034 5.00688 5.02770 5.16745 5.26066 5.35513 5.44669 5.51209 5.56382 5.63665 6.07873 6.20036 6.45703 6.55355 6.72827 6.81852 7.33775 8.86156 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026996 B = 0.014766 C = 0.011790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.943655 B = 1895.793013 C = 2374.280770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.077 3.923 3 C -0.127 4.127 4 N -0.524 5.524 5 C 0.017 3.983 6 C 0.084 3.916 7 H 0.103 0.897 8 C -0.128 4.128 9 N -0.688 5.688 10 C 0.071 3.929 11 C 0.161 3.839 12 H -0.004 1.004 13 C -0.490 4.490 14 H 0.034 0.966 15 C 0.019 3.981 16 N -0.944 5.944 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.243 1.243 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.024 0.976 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.025 0.975 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.334 0.666 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.082 9.252 9.847 14.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.032 4.032 3 C -0.185 4.185 4 N -0.248 5.248 5 C -0.113 4.113 6 C -0.026 4.026 7 H 0.121 0.879 8 C -0.186 4.186 9 N -0.316 5.316 10 C -0.059 4.059 11 C 0.052 3.948 12 H 0.013 0.987 13 C -0.529 4.529 14 H 0.052 0.948 15 C -0.179 4.179 16 N -0.584 5.584 17 Si 0.755 3.245 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.167 1.167 21 H 0.083 0.917 22 H 0.087 0.913 23 H 0.044 0.956 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.151 0.849 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.035 9.000 10.161 13.909 hybrid contribution -2.004 -0.684 -1.280 2.474 sum -5.039 8.316 8.881 13.169 Atomic orbital electron populations 1.22315 0.98070 1.00206 1.02377 1.21551 0.92381 0.95306 0.93935 1.21725 1.01111 0.93764 1.01877 1.62308 1.58289 1.02854 1.01366 1.22990 0.96177 1.00498 0.91606 1.21750 0.97466 0.86911 0.96432 0.87937 1.21635 0.94298 1.01436 1.01195 1.60892 1.18478 1.13700 1.38539 1.22170 0.99825 0.96983 0.86892 1.20156 0.93004 0.86659 0.94985 0.98661 1.20924 1.06478 1.17578 1.07969 0.94817 1.25732 1.00311 0.97284 0.94551 1.70043 1.42598 1.29831 1.15951 0.86015 0.80100 0.77799 0.80632 1.20384 1.21224 1.16656 0.91684 0.91322 0.95643 0.92662 0.91581 0.92873 0.91837 0.89169 0.95708 0.93870 0.91296 0.92683 0.84895 0.92888 0.91660 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.93 8.45 71.98 0.61 -5.33 16 2 C 0.08 2.94 2.73 44.91 0.12 3.07 16 3 C -0.13 -3.77 8.92 71.98 0.64 -3.13 16 4 N -0.52 -20.55 3.79 -849.75 -3.22 -23.78 16 5 C 0.02 0.52 4.19 86.31 0.36 0.88 16 6 C 0.08 2.45 3.69 44.92 0.17 2.61 16 7 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 8 C -0.13 -3.72 8.84 71.98 0.64 -3.08 16 9 N -0.69 -23.20 6.70 -491.13 -3.29 -26.49 16 10 C 0.07 2.98 5.39 86.31 0.47 3.44 16 11 C 0.16 7.31 1.19 44.17 0.05 7.36 16 12 H 0.00 -0.19 4.19 -2.39 -0.01 -0.20 16 13 C -0.49 -27.33 7.36 25.60 0.19 -27.14 16 14 H 0.03 2.15 8.06 -2.91 -0.02 2.12 16 15 C 0.02 1.09 5.47 84.65 0.46 1.56 16 16 N -0.94 -58.34 13.96 21.45 0.30 -58.04 16 17 Si 0.93 43.91 26.58 68.60 1.82 45.74 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 19 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 20 H -0.24 -10.57 6.06 99.48 0.60 -9.97 16 21 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 22 H 0.07 2.04 6.41 -2.39 -0.02 2.02 16 23 H 0.02 1.01 6.71 -2.39 -0.02 0.99 16 24 H 0.06 2.64 6.69 -2.38 -0.02 2.63 16 25 H 0.07 1.65 6.79 -2.38 -0.02 1.63 16 26 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.09 2.41 6.44 -2.39 -0.02 2.39 16 29 H 0.02 0.77 6.42 -2.38 -0.02 0.75 16 30 H 0.04 1.54 5.94 -2.39 -0.01 1.52 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.33 10.63 8.89 -89.70 -0.80 9.83 16 34 H 0.05 2.31 7.08 -2.39 -0.02 2.30 16 35 H 0.06 2.89 6.35 -2.38 -0.02 2.87 16 36 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -62.41 264.67 -0.53 -62.94 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.16 Total: 19.39 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: 3.71 Total: -19.76 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -6.21 Total: -108.31 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.82 Total: 45.74 kcal Total: -62.41 -0.53 -62.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251576243.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.844 kcal (2) G-P(sol) polarization free energy of solvation -62.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds