Wall clock time and date at job start Mon Mar 30 2020 02:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46906 * 2 1 4 4 N 1.46900 * 109.46732 * 120.00017 * 2 1 3 5 5 C 1.46955 * 111.00076 * 306.08014 * 4 2 1 6 6 C 1.53051 * 109.36374 * 183.19122 * 5 4 2 7 7 H 1.08999 * 109.48876 * 61.56685 * 6 5 4 8 8 C 1.52997 * 109.48959 * 181.63287 * 6 5 4 9 9 N 1.46955 * 109.36422 * 301.59719 * 6 5 4 10 10 C 1.46955 * 110.87962 * 59.32215 * 9 6 5 11 11 C 1.46955 * 111.00121 * 69.88009 * 4 2 1 12 12 H 1.08999 * 109.49115 * 296.77694 * 11 4 2 13 13 C 1.50701 * 109.48628 * 56.84148 * 11 4 2 14 14 H 1.08000 * 120.00282 * 35.12686 * 13 11 4 15 15 C 1.37874 * 120.00033 * 215.12157 * 13 11 4 16 16 N 1.31519 * 120.00223 * 174.54092 * 15 13 11 17 17 Si 1.86806 * 120.00036 * 354.54636 * 15 13 11 18 18 H 1.48499 * 109.47179 * 94.19719 * 17 15 13 19 19 H 1.48500 * 109.46953 * 214.19786 * 17 15 13 20 20 H 1.48501 * 109.46862 * 334.19206 * 17 15 13 21 21 H 1.09003 * 109.47191 * 300.00418 * 1 2 3 22 22 H 1.09004 * 109.47185 * 59.99551 * 1 2 3 23 23 H 1.08994 * 109.47661 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46878 * 240.00242 * 2 1 3 25 25 H 1.09000 * 109.46374 * 176.50412 * 3 2 1 26 26 H 1.08994 * 109.47239 * 296.50447 * 3 2 1 27 27 H 1.09000 * 109.47342 * 56.51077 * 3 2 1 28 28 H 1.09001 * 109.48768 * 303.15412 * 5 4 2 29 29 H 1.08995 * 109.49145 * 63.22255 * 5 4 2 30 30 H 1.09002 * 109.47375 * 179.89082 * 8 6 5 31 31 H 1.09002 * 109.46836 * 299.88680 * 8 6 5 32 32 H 1.08997 * 109.47745 * 59.89001 * 8 6 5 33 33 H 1.00900 * 110.99949 * 183.18519 * 9 6 5 34 34 H 1.09001 * 109.49350 * 180.71033 * 10 9 6 35 35 H 1.09004 * 109.49056 * 60.64473 * 10 9 6 36 36 H 0.97005 * 120.00262 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.4334 -0.1152 2.4171 6 6 2.0276 -0.8094 3.6448 7 1 3.1043 -0.6415 3.6720 8 6 1.3893 -0.2387 4.9128 9 7 1.7582 -2.2520 3.5670 10 6 2.3444 -2.8293 2.3493 11 6 1.7502 -2.1351 1.1216 12 1 0.6736 -2.3030 1.0944 13 6 2.3789 -2.6972 -0.1274 14 1 3.3189 -2.3024 -0.4835 15 6 1.7540 -3.7155 -0.8154 16 7 2.2454 -4.1330 -1.9616 17 14 0.2091 -4.5022 -0.1196 18 1 -0.9874 -3.8355 -0.6935 19 1 0.1875 -5.9451 -0.4700 20 1 0.1991 -4.3513 1.3577 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1282 1.4431 0.0627 26 1 1.7287 1.9379 -0.9196 27 1 1.6265 1.9741 0.8570 28 1 1.6572 0.9508 2.4583 29 1 0.3532 -0.2601 2.4046 30 1 1.8113 -0.7347 5.7869 31 1 1.5894 0.8312 4.9703 32 1 0.3127 -0.4061 4.8847 33 1 2.0946 -2.7276 4.3908 34 1 2.1208 -3.8953 2.3081 35 1 3.4247 -2.6843 2.3618 36 1 1.8056 -4.8493 -2.4459 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251576248.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:50 Heat of formation + Delta-G solvation = 2.362446 kcal Electronic energy + Delta-G solvation = -15489.993165 eV Core-core repulsion = 13201.782682 eV Total energy + Delta-G solvation = -2288.210482 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.87011 -35.30857 -33.14544 -31.36735 -30.20672 -27.61791 -26.56426 -24.61729 -23.77513 -20.96805 -19.85337 -18.19399 -16.93296 -15.86178 -14.79453 -14.33937 -14.12674 -14.01071 -13.39248 -13.18548 -13.00577 -12.55610 -12.33417 -11.97834 -11.65285 -11.34868 -11.30183 -11.04360 -10.85403 -10.55502 -10.45257 -10.26566 -9.92658 -9.78102 -9.53124 -9.12850 -8.55240 -7.84538 -7.18481 -6.10919 -4.09954 3.26968 3.37111 3.45576 4.40418 4.75507 4.78489 5.23276 5.38152 5.52927 5.69094 5.73615 5.84032 5.89695 6.04709 6.09882 6.12956 6.19707 6.28484 6.31437 6.37043 6.39288 6.53366 6.58334 6.61161 6.76720 6.92779 7.13791 7.27722 7.46834 7.76795 7.93748 8.08691 8.24020 8.68188 9.00623 9.53835 11.01390 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026809 B = 0.014087 C = 0.010967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.188912 B = 1987.137811 C = 2552.421112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.082 3.918 3 C -0.139 4.139 4 N -0.525 5.525 5 C 0.056 3.944 6 C 0.086 3.914 7 H 0.038 0.962 8 C -0.141 4.141 9 N -0.695 5.695 10 C 0.066 3.934 11 C 0.189 3.811 12 H 0.013 0.987 13 C -0.504 4.504 14 H 0.080 0.920 15 C 0.076 3.924 16 N -0.894 5.894 17 Si 0.864 3.136 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.255 1.255 21 H 0.045 0.955 22 H 0.049 0.951 23 H 0.055 0.945 24 H 0.105 0.895 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.033 0.967 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.326 0.674 34 H 0.066 0.934 35 H 0.031 0.969 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.531 7.389 8.828 11.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.026 4.026 3 C -0.197 4.197 4 N -0.249 5.249 5 C -0.072 4.072 6 C -0.025 4.025 7 H 0.056 0.944 8 C -0.200 4.200 9 N -0.327 5.327 10 C -0.063 4.063 11 C 0.082 3.918 12 H 0.031 0.969 13 C -0.543 4.543 14 H 0.098 0.902 15 C -0.127 4.127 16 N -0.532 5.532 17 Si 0.691 3.309 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.179 1.179 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.123 0.877 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.142 0.858 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.658 7.397 8.410 11.511 hybrid contribution -0.808 -0.722 0.469 1.181 sum -3.465 6.674 8.880 11.636 Atomic orbital electron populations 1.22402 0.99116 1.01746 1.00471 1.21568 0.91507 0.93695 0.95876 1.21840 1.01448 0.96291 1.00084 1.62404 1.57448 1.04969 1.00100 1.22166 0.96896 0.97578 0.90604 1.21457 0.97516 0.88933 0.94547 0.94355 1.21780 1.01465 1.00002 0.96725 1.60748 1.63718 1.02712 1.05477 1.22414 0.96654 0.98375 0.88828 1.19683 0.94578 0.83884 0.93673 0.96940 1.20867 1.08780 1.18077 1.06544 0.90211 1.24984 0.96940 0.96535 0.94254 1.69905 1.40766 1.28656 1.13865 0.87053 0.84033 0.78793 0.81053 1.20531 1.21431 1.17873 0.93567 0.93195 0.92588 0.87739 0.92366 0.93246 0.93863 0.91740 0.94897 0.93118 0.92605 0.92239 0.85759 0.91516 0.95114 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.35 8.43 37.16 0.31 -3.04 16 2 C 0.08 1.64 2.74 -67.71 -0.19 1.46 16 3 C -0.14 -2.27 9.04 37.16 0.34 -1.94 16 4 N -0.53 -11.13 4.47 -219.94 -0.98 -12.11 16 5 C 0.06 1.02 4.03 -3.77 -0.02 1.01 16 6 C 0.09 1.44 3.19 -67.66 -0.22 1.23 16 7 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 8 C -0.14 -1.86 9.46 37.16 0.35 -1.51 16 9 N -0.70 -12.87 6.55 -106.59 -0.70 -13.57 16 10 C 0.07 1.45 5.77 -3.77 -0.02 1.43 16 11 C 0.19 4.50 1.21 -68.81 -0.08 4.42 16 12 H 0.01 0.33 4.24 -51.93 -0.22 0.11 16 13 C -0.50 -13.81 7.35 -34.44 -0.25 -14.06 16 14 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 15 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 16 N -0.89 -26.74 13.96 55.43 0.77 -25.96 16 17 Si 0.86 21.42 26.57 -169.99 -4.52 16.90 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.25 -6.17 6.06 56.52 0.34 -5.83 16 21 H 0.05 0.79 6.40 -51.93 -0.33 0.46 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.06 1.19 6.75 -51.93 -0.35 0.84 16 24 H 0.10 2.44 6.66 -51.93 -0.35 2.10 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.64 6.66 -51.93 -0.35 0.30 16 28 H 0.06 1.05 6.41 -51.93 -0.33 0.72 16 29 H 0.03 0.63 6.41 -51.93 -0.33 0.29 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.33 5.19 8.83 -39.29 -0.35 4.85 16 34 H 0.07 1.50 7.06 -51.93 -0.37 1.13 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 269.43 15.07 4.06 4.06 Total: -1.00 -29.07 269.43 -7.21 -36.28 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -5.97 Total: 3.38 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 0.13 Total: -8.97 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.91 Total: -51.64 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.52 Total: 16.90 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.07 -7.21 -36.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251576248.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.639 kcal (2) G-P(sol) polarization free energy of solvation -29.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds