Wall clock time and date at job start Mon Mar 30 2020 02:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46906 * 2 1 4 4 N 1.46900 * 109.46732 * 120.00017 * 2 1 3 5 5 C 1.46955 * 111.00076 * 306.08014 * 4 2 1 6 6 C 1.53051 * 109.36374 * 183.19122 * 5 4 2 7 7 H 1.08999 * 109.48876 * 61.56685 * 6 5 4 8 8 C 1.52997 * 109.48959 * 181.63287 * 6 5 4 9 9 N 1.46955 * 109.36422 * 301.59719 * 6 5 4 10 10 C 1.46955 * 110.87962 * 59.32215 * 9 6 5 11 11 C 1.46955 * 111.00121 * 69.88009 * 4 2 1 12 12 H 1.08999 * 109.49115 * 296.77694 * 11 4 2 13 13 C 1.50701 * 109.48628 * 56.84148 * 11 4 2 14 14 H 1.08000 * 120.00282 * 35.12686 * 13 11 4 15 15 C 1.37874 * 120.00033 * 215.12157 * 13 11 4 16 16 N 1.31519 * 120.00223 * 174.54092 * 15 13 11 17 17 Si 1.86806 * 120.00036 * 354.54636 * 15 13 11 18 18 H 1.48499 * 109.47179 * 94.19719 * 17 15 13 19 19 H 1.48500 * 109.46953 * 214.19786 * 17 15 13 20 20 H 1.48501 * 109.46862 * 334.19206 * 17 15 13 21 21 H 1.09003 * 109.47191 * 300.00418 * 1 2 3 22 22 H 1.09004 * 109.47185 * 59.99551 * 1 2 3 23 23 H 1.08994 * 109.47661 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46878 * 240.00242 * 2 1 3 25 25 H 1.09000 * 109.46374 * 176.50412 * 3 2 1 26 26 H 1.08994 * 109.47239 * 296.50447 * 3 2 1 27 27 H 1.09000 * 109.47342 * 56.51077 * 3 2 1 28 28 H 1.09001 * 109.48768 * 303.15412 * 5 4 2 29 29 H 1.08995 * 109.49145 * 63.22255 * 5 4 2 30 30 H 1.09002 * 109.47375 * 179.89082 * 8 6 5 31 31 H 1.09002 * 109.46836 * 299.88680 * 8 6 5 32 32 H 1.08997 * 109.47745 * 59.89001 * 8 6 5 33 33 H 1.00900 * 110.99949 * 183.18519 * 9 6 5 34 34 H 1.09001 * 109.49350 * 180.71033 * 10 9 6 35 35 H 1.09004 * 109.49056 * 60.64473 * 10 9 6 36 36 H 0.97005 * 120.00262 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.4334 -0.1152 2.4171 6 6 2.0276 -0.8094 3.6448 7 1 3.1043 -0.6415 3.6720 8 6 1.3893 -0.2387 4.9128 9 7 1.7582 -2.2520 3.5670 10 6 2.3444 -2.8293 2.3493 11 6 1.7502 -2.1351 1.1216 12 1 0.6736 -2.3030 1.0944 13 6 2.3789 -2.6972 -0.1274 14 1 3.3189 -2.3024 -0.4835 15 6 1.7540 -3.7155 -0.8154 16 7 2.2454 -4.1330 -1.9616 17 14 0.2091 -4.5022 -0.1196 18 1 -0.9874 -3.8355 -0.6935 19 1 0.1875 -5.9451 -0.4700 20 1 0.1991 -4.3513 1.3577 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1282 1.4431 0.0627 26 1 1.7287 1.9379 -0.9196 27 1 1.6265 1.9741 0.8570 28 1 1.6572 0.9508 2.4583 29 1 0.3532 -0.2601 2.4046 30 1 1.8113 -0.7347 5.7869 31 1 1.5894 0.8312 4.9703 32 1 0.3127 -0.4061 4.8847 33 1 2.0946 -2.7276 4.3908 34 1 2.1208 -3.8953 2.3081 35 1 3.4247 -2.6843 2.3618 36 1 1.8056 -4.8493 -2.4459 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251576248.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:49 Heat of formation + Delta-G solvation = -20.012754 kcal Electronic energy + Delta-G solvation = -15490.963426 eV Core-core repulsion = 13201.782682 eV Total energy + Delta-G solvation = -2289.180744 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.47263 -36.79476 -35.12156 -33.13578 -31.74155 -29.24731 -28.00566 -26.12976 -25.59910 -22.60445 -21.37704 -19.86802 -19.03141 -17.50016 -16.30713 -16.02892 -15.87732 -15.63303 -14.98529 -14.74239 -14.66291 -14.44931 -13.72440 -13.31490 -13.14352 -12.82057 -12.71965 -12.68765 -12.39594 -12.28856 -12.01208 -11.85942 -11.74170 -11.60984 -11.15628 -11.07909 -10.69096 -9.36820 -8.86341 -8.31515 -6.33491 1.27693 1.32678 1.46021 2.30836 2.96672 3.29161 3.39680 4.05387 4.10360 4.35246 4.36431 4.38158 4.51505 4.59074 4.63088 4.73965 4.81495 4.83346 4.92744 4.94973 4.97340 5.03047 5.14915 5.19175 5.28122 5.42685 5.49228 5.52852 5.61898 6.08019 6.17153 6.41854 6.65692 6.72285 6.81561 7.33582 8.84940 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026809 B = 0.014087 C = 0.010967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.188912 B = 1987.137811 C = 2552.421112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.077 3.923 3 C -0.128 4.128 4 N -0.538 5.538 5 C 0.056 3.944 6 C 0.082 3.918 7 H 0.033 0.967 8 C -0.131 4.131 9 N -0.694 5.694 10 C 0.074 3.926 11 C 0.195 3.805 12 H 0.001 0.999 13 C -0.497 4.497 14 H 0.034 0.966 15 C 0.024 3.976 16 N -0.941 5.941 17 Si 0.926 3.074 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.243 1.243 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.024 0.976 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.029 0.971 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.344 0.656 34 H 0.057 0.943 35 H 0.018 0.982 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.878 8.915 11.212 14.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.032 4.032 3 C -0.185 4.185 4 N -0.262 5.262 5 C -0.072 4.072 6 C -0.028 4.028 7 H 0.051 0.949 8 C -0.189 4.189 9 N -0.327 5.327 10 C -0.056 4.056 11 C 0.087 3.913 12 H 0.019 0.981 13 C -0.536 4.536 14 H 0.053 0.947 15 C -0.175 4.175 16 N -0.581 5.581 17 Si 0.751 3.249 18 H -0.202 1.202 19 H -0.210 1.210 20 H -0.167 1.167 21 H 0.087 0.913 22 H 0.086 0.914 23 H 0.043 0.957 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.162 0.838 34 H 0.075 0.925 35 H 0.036 0.964 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.001 8.941 10.826 14.600 hybrid contribution -0.306 -1.109 -0.289 1.186 sum -4.307 7.833 10.537 13.818 Atomic orbital electron populations 1.22316 0.97884 1.00276 1.02465 1.21557 0.92557 0.95363 0.93718 1.21734 1.00971 0.93718 1.02093 1.62345 1.58366 1.03600 1.01912 1.22315 0.96501 0.98982 0.89451 1.21609 0.97594 0.87716 0.95876 0.94873 1.21703 1.00974 1.01259 0.94954 1.60667 1.63273 1.03998 1.04766 1.22090 0.95826 0.97779 0.89916 1.19467 0.93324 0.85839 0.92685 0.98137 1.20959 1.07021 1.17619 1.07961 0.94749 1.25703 1.00108 0.97190 0.94451 1.70038 1.42739 1.29807 1.15515 0.86054 0.80171 0.77825 0.80852 1.20242 1.20968 1.16680 0.91305 0.91413 0.95711 0.92458 0.93073 0.91479 0.91519 0.89184 0.95294 0.91492 0.90456 0.92384 0.83752 0.92500 0.96361 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.17 8.43 71.98 0.61 -5.56 16 2 C 0.08 3.05 2.74 44.92 0.12 3.17 16 3 C -0.13 -3.90 9.04 71.98 0.65 -3.25 16 4 N -0.54 -22.50 4.47 -849.77 -3.80 -26.30 16 5 C 0.06 1.86 4.03 86.31 0.35 2.21 16 6 C 0.08 2.51 3.19 44.92 0.14 2.65 16 7 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 8 C -0.13 -2.86 9.46 71.98 0.68 -2.18 16 9 N -0.69 -24.11 6.55 -491.14 -3.21 -27.33 16 10 C 0.07 3.20 5.77 86.31 0.50 3.69 16 11 C 0.20 9.34 1.21 44.18 0.05 9.40 16 12 H 0.00 0.05 4.24 -2.39 -0.01 0.04 16 13 C -0.50 -28.39 7.35 25.60 0.19 -28.20 16 14 H 0.03 2.23 8.06 -2.91 -0.02 2.20 16 15 C 0.02 1.39 5.47 84.65 0.46 1.85 16 16 N -0.94 -58.54 13.96 21.45 0.30 -58.24 16 17 Si 0.93 45.07 26.57 68.60 1.82 46.90 16 18 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 19 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 20 H -0.24 -11.30 6.06 99.48 0.60 -10.69 16 21 H 0.07 2.15 6.40 -2.39 -0.02 2.14 16 22 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 23 H 0.02 1.02 6.75 -2.39 -0.02 1.00 16 24 H 0.06 2.80 6.66 -2.39 -0.02 2.78 16 25 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.07 1.73 6.66 -2.39 -0.02 1.71 16 28 H 0.09 2.56 6.41 -2.39 -0.02 2.55 16 29 H 0.03 1.01 6.41 -2.39 -0.02 0.99 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.34 10.00 8.83 -89.69 -0.79 9.21 16 34 H 0.06 2.53 7.06 -2.39 -0.02 2.52 16 35 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 Total: -1.00 -65.07 269.43 -0.98 -66.05 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.15 Total: 15.14 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 3.76 Total: -16.22 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -6.71 Total: -111.86 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.82 Total: 46.90 kcal Total: -65.07 -0.98 -66.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251576248.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.041 kcal (2) G-P(sol) polarization free energy of solvation -65.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds