Wall clock time and date at job start Mon Mar 30 2020 03:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.47298 * 2 1 4 4 C 1.50707 * 109.47151 * 240.00866 * 2 1 3 5 5 H 1.07995 * 119.99666 * 239.99672 * 4 2 1 6 6 C 1.37877 * 119.99873 * 59.99339 * 4 2 1 7 7 N 1.31510 * 120.00293 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99629 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47082 * 90.00404 * 8 6 4 10 10 H 1.48502 * 109.47233 * 210.00368 * 8 6 4 11 11 H 1.48503 * 109.47455 * 330.00321 * 8 6 4 12 12 N 1.46894 * 109.47521 * 120.00302 * 2 1 3 13 13 C 1.46900 * 111.00043 * 176.04607 * 12 2 1 14 14 C 1.46893 * 111.00014 * 300.00121 * 12 2 1 15 15 H 1.09004 * 110.01520 * 54.52460 * 14 12 2 16 16 C 1.54267 * 110.03613 * 293.07666 * 14 12 2 17 17 C 1.54891 * 104.19568 * 217.10723 * 16 14 12 18 18 C 1.54887 * 102.74843 * 37.94254 * 17 16 14 19 19 C 1.53876 * 110.03223 * 175.91055 * 14 12 2 20 20 H 1.09002 * 110.03305 * 359.94838 * 19 14 12 21 21 N 1.46905 * 110.03459 * 238.57048 * 19 14 12 22 22 H 1.08999 * 109.46806 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47058 * 59.99749 * 1 2 3 24 24 H 1.09000 * 109.46812 * 299.99230 * 1 2 3 25 25 H 0.96998 * 119.99943 * 179.97438 * 7 6 4 26 26 H 1.08994 * 109.47369 * 52.85197 * 13 12 2 27 27 H 1.09004 * 109.46935 * 172.85041 * 13 12 2 28 28 H 1.09002 * 109.47616 * 292.84684 * 13 12 2 29 29 H 1.08999 * 110.48102 * 335.78349 * 16 14 12 30 30 H 1.09002 * 110.48175 * 98.42560 * 16 14 12 31 31 H 1.08999 * 110.75203 * 279.62481 * 17 16 14 32 32 H 1.09007 * 110.91082 * 156.32943 * 17 16 14 33 33 H 1.08997 * 110.48308 * 203.37743 * 18 17 16 34 34 H 1.08999 * 110.48711 * 80.73837 * 18 17 16 35 35 H 1.00900 * 111.00024 * 179.97438 * 21 19 14 36 36 H 1.00901 * 110.99874 * 303.95243 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5883 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3213 -1.1199 -4.0081 9 1 1.3427 -2.1612 -4.4121 10 1 2.4865 -0.1408 -5.1124 11 1 3.6293 -1.7579 -3.7125 12 7 2.0198 -0.6925 1.1993 13 6 3.4852 -0.7945 1.1868 14 6 1.5488 -0.0265 2.4210 15 1 0.4628 0.0646 2.4012 16 6 2.1952 1.3687 2.5451 17 6 2.4528 1.5343 4.0634 18 6 2.8861 0.1109 4.4938 19 6 1.9881 -0.8262 3.6601 20 1 2.5499 -1.7090 3.3548 21 7 0.8118 -1.2253 4.4445 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5137 0.8901 25 1 0.7093 1.1621 -3.4843 26 1 3.9169 0.1941 1.0313 27 1 3.8296 -1.1955 2.1401 28 1 3.7964 -1.4579 0.3799 29 1 3.1341 1.4045 1.9927 30 1 1.5116 2.1389 2.1878 31 1 1.5405 1.8331 4.5796 32 1 3.2515 2.2531 4.2464 33 1 2.7067 -0.0367 5.5587 34 1 3.9366 -0.0563 4.2562 35 1 1.0835 -1.7516 5.2613 36 1 0.2577 -0.4216 4.6996 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251594835.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:47 Heat of formation + Delta-G solvation = 2.350352 kcal Electronic energy + Delta-G solvation = -15200.158190 eV Core-core repulsion = 12911.947183 eV Total energy + Delta-G solvation = -2288.211007 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.17071 -35.46328 -32.57394 -31.85683 -29.12878 -27.74017 -26.23260 -24.71753 -23.66095 -20.88069 -19.84193 -18.40383 -16.24823 -15.86663 -15.48443 -14.66872 -14.55136 -13.90934 -13.72136 -13.17679 -12.73177 -12.24330 -11.73534 -11.64491 -11.29257 -11.09766 -11.01423 -10.85074 -10.75980 -10.58782 -10.35550 -10.08171 -9.97991 -9.95408 -9.63375 -8.79347 -8.40524 -8.35781 -7.00185 -5.95745 -3.99621 3.34117 3.40197 3.43403 4.44595 4.74060 4.83135 4.89821 5.19320 5.33816 5.42405 5.71688 5.81496 5.87089 5.91973 5.94458 6.11157 6.18240 6.22633 6.33060 6.41221 6.62235 6.73395 6.87565 6.97670 7.16074 7.24946 7.46070 7.61647 7.67086 7.83128 7.89858 8.30499 8.41012 8.70520 9.07430 9.65111 11.11058 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049887 B = 0.008305 C = 0.008167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.137329 B = 3370.541453 C = 3427.742532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.213 3.787 3 H 0.000 1.000 4 C -0.501 4.501 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.526 5.526 13 C 0.036 3.964 14 C 0.086 3.914 15 H 0.090 0.910 16 C -0.160 4.160 17 C -0.121 4.121 18 C -0.160 4.160 19 C 0.091 3.909 20 H 0.090 0.910 21 N -0.836 5.836 22 H 0.034 0.966 23 H 0.083 0.917 24 H 0.007 0.993 25 H 0.259 0.741 26 H 0.016 0.984 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.333 0.667 36 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.609 0.217 12.080 12.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.107 3.893 3 H 0.018 0.982 4 C -0.540 4.540 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.249 5.249 13 C -0.113 4.113 14 C -0.024 4.024 15 H 0.108 0.892 16 C -0.200 4.200 17 C -0.159 4.159 18 C -0.200 4.200 19 C -0.021 4.021 20 H 0.108 0.892 21 N -0.364 5.364 22 H 0.053 0.947 23 H 0.101 0.899 24 H 0.026 0.974 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.145 0.855 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.108 -0.583 11.243 11.454 hybrid contribution 1.075 1.088 -0.113 1.533 sum 3.183 0.505 11.130 11.587 Atomic orbital electron populations 1.21822 0.97840 0.99645 0.99650 1.19234 0.92256 0.92043 0.85772 0.98208 1.21189 1.30805 1.12146 0.89863 0.91981 1.24929 0.95311 0.95102 0.98976 1.69896 1.37136 1.23073 1.23267 0.86541 0.79195 0.79302 0.82596 1.20697 1.21421 1.20002 1.62309 1.08787 1.51873 1.01955 1.22233 0.89466 0.99513 1.00065 1.22358 1.00343 0.89475 0.90190 0.89218 1.23103 1.01998 0.99619 0.95267 1.22406 1.00309 0.96314 0.96828 1.23243 1.00856 0.96860 0.99006 1.22206 0.89643 0.97451 0.92784 0.89185 1.58865 1.22453 1.28050 1.27018 0.94700 0.89862 0.97405 0.93096 0.96524 0.93923 0.91230 0.90920 0.91893 0.92153 0.92309 0.92459 0.91577 0.85466 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.75 37.16 0.33 -2.99 16 2 C 0.21 5.45 1.84 -68.86 -0.13 5.32 16 3 H 0.00 0.01 7.34 -51.92 -0.38 -0.37 16 4 C -0.50 -13.94 7.99 -34.44 -0.28 -14.22 16 5 H 0.06 1.73 6.42 -52.49 -0.34 1.39 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.83 11.32 55.43 0.63 -25.21 16 8 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.53 -11.50 4.58 -226.95 -1.04 -12.54 16 13 C 0.04 0.71 8.28 60.06 0.50 1.21 16 14 C 0.09 1.59 2.47 -66.60 -0.16 1.42 16 15 H 0.09 1.78 5.83 -51.93 -0.30 1.48 16 16 C -0.16 -2.73 5.18 -25.07 -0.13 -2.86 16 17 C -0.12 -1.61 6.91 -24.74 -0.17 -1.78 16 18 C -0.16 -2.03 6.49 -25.08 -0.16 -2.19 16 19 C 0.09 1.38 3.04 -66.59 -0.20 1.18 16 20 H 0.09 1.50 6.48 -51.93 -0.34 1.16 16 21 N -0.84 -11.26 9.11 -3.72 -0.03 -11.30 16 22 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.08 2.28 6.07 -51.93 -0.32 1.97 16 24 H 0.01 0.16 6.29 -51.93 -0.33 -0.16 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.02 0.33 6.31 -51.93 -0.33 0.01 16 27 H 0.04 0.73 6.06 -51.93 -0.31 0.41 16 28 H 0.07 1.47 6.52 -51.93 -0.34 1.14 16 29 H 0.07 1.34 5.70 -51.93 -0.30 1.04 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.63 8.03 -51.93 -0.42 0.21 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.33 3.68 9.06 -39.29 -0.36 3.32 16 36 H 0.33 4.12 8.97 -39.29 -0.35 3.76 16 LS Contribution 270.24 15.07 4.07 4.07 Total: -1.00 -28.87 270.24 -7.55 -36.42 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.65 Total: 5.32 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -0.50 Total: -13.40 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.45 Total: -49.05 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.87 -7.55 -36.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251594835.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.768 kcal (2) G-P(sol) polarization free energy of solvation -28.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds