Wall clock time and date at job start Mon Mar 30 2020 03:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.47298 * 2 1 4 4 C 1.50707 * 109.47151 * 240.00866 * 2 1 3 5 5 H 1.07995 * 119.99666 * 239.99672 * 4 2 1 6 6 C 1.37877 * 119.99873 * 59.99339 * 4 2 1 7 7 N 1.31510 * 120.00293 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99629 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47082 * 90.00404 * 8 6 4 10 10 H 1.48502 * 109.47233 * 210.00368 * 8 6 4 11 11 H 1.48503 * 109.47455 * 330.00321 * 8 6 4 12 12 N 1.46894 * 109.47521 * 120.00302 * 2 1 3 13 13 C 1.46900 * 111.00043 * 176.04607 * 12 2 1 14 14 C 1.46893 * 111.00014 * 300.00121 * 12 2 1 15 15 H 1.09004 * 110.01520 * 54.52460 * 14 12 2 16 16 C 1.54267 * 110.03613 * 293.07666 * 14 12 2 17 17 C 1.54891 * 104.19568 * 217.10723 * 16 14 12 18 18 C 1.54887 * 102.74843 * 37.94254 * 17 16 14 19 19 C 1.53876 * 110.03223 * 175.91055 * 14 12 2 20 20 H 1.09002 * 110.03305 * 359.94838 * 19 14 12 21 21 N 1.46905 * 110.03459 * 238.57048 * 19 14 12 22 22 H 1.08999 * 109.46806 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47058 * 59.99749 * 1 2 3 24 24 H 1.09000 * 109.46812 * 299.99230 * 1 2 3 25 25 H 0.96998 * 119.99943 * 179.97438 * 7 6 4 26 26 H 1.08994 * 109.47369 * 52.85197 * 13 12 2 27 27 H 1.09004 * 109.46935 * 172.85041 * 13 12 2 28 28 H 1.09002 * 109.47616 * 292.84684 * 13 12 2 29 29 H 1.08999 * 110.48102 * 335.78349 * 16 14 12 30 30 H 1.09002 * 110.48175 * 98.42560 * 16 14 12 31 31 H 1.08999 * 110.75203 * 279.62481 * 17 16 14 32 32 H 1.09007 * 110.91082 * 156.32943 * 17 16 14 33 33 H 1.08997 * 110.48308 * 203.37743 * 18 17 16 34 34 H 1.08999 * 110.48711 * 80.73837 * 18 17 16 35 35 H 1.00900 * 111.00024 * 179.97438 * 21 19 14 36 36 H 1.00901 * 110.99874 * 303.95243 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5883 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3213 -1.1199 -4.0081 9 1 1.3427 -2.1612 -4.4121 10 1 2.4865 -0.1408 -5.1124 11 1 3.6293 -1.7579 -3.7125 12 7 2.0198 -0.6925 1.1993 13 6 3.4852 -0.7945 1.1868 14 6 1.5488 -0.0265 2.4210 15 1 0.4628 0.0646 2.4012 16 6 2.1952 1.3687 2.5451 17 6 2.4528 1.5343 4.0634 18 6 2.8861 0.1109 4.4938 19 6 1.9881 -0.8262 3.6601 20 1 2.5499 -1.7090 3.3548 21 7 0.8118 -1.2253 4.4445 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5137 0.8901 25 1 0.7093 1.1621 -3.4843 26 1 3.9169 0.1941 1.0313 27 1 3.8296 -1.1955 2.1401 28 1 3.7964 -1.4579 0.3799 29 1 3.1341 1.4045 1.9927 30 1 1.5116 2.1389 2.1878 31 1 1.5405 1.8331 4.5796 32 1 3.2515 2.2531 4.2464 33 1 2.7067 -0.0367 5.5587 34 1 3.9366 -0.0563 4.2562 35 1 1.0835 -1.7516 5.2613 36 1 0.2577 -0.4216 4.6996 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251594835.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:47 Heat of formation + Delta-G solvation = -18.649094 kcal Electronic energy + Delta-G solvation = -15201.068794 eV Core-core repulsion = 12911.947183 eV Total energy + Delta-G solvation = -2289.121611 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.59305 -37.11250 -34.50479 -33.07399 -31.09228 -29.19363 -27.58263 -26.65858 -25.35127 -22.46423 -21.22225 -19.90717 -18.29302 -17.41533 -16.92418 -16.33292 -15.77588 -15.53627 -15.18768 -14.76246 -14.48413 -13.84442 -13.44083 -13.11167 -12.94296 -12.67779 -12.64421 -12.47448 -12.42248 -12.07629 -11.95425 -11.91809 -11.81755 -11.49813 -11.25336 -10.83846 -10.49547 -9.45613 -8.76488 -8.10019 -6.21467 1.41475 1.42752 1.52605 2.42746 3.17600 3.36431 3.61663 3.71130 4.03948 4.13307 4.43796 4.55419 4.57635 4.63081 4.69417 4.76765 4.78932 4.87932 4.95604 5.04523 5.09341 5.15791 5.21324 5.25422 5.31415 5.44225 5.55291 5.76449 5.83377 6.28203 6.39453 6.46892 6.76072 6.84417 6.94988 7.47723 8.95938 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049887 B = 0.008305 C = 0.008167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.137329 B = 3370.541453 C = 3427.742532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.220 3.780 3 H -0.032 1.032 4 C -0.519 4.519 5 H 0.057 0.943 6 C 0.009 3.991 7 N -0.921 5.921 8 Si 0.959 3.041 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.268 1.268 12 N -0.537 5.537 13 C 0.042 3.958 14 C 0.082 3.918 15 H 0.072 0.928 16 C -0.160 4.160 17 C -0.111 4.111 18 C -0.149 4.149 19 C 0.100 3.900 20 H 0.077 0.923 21 N -0.844 5.844 22 H 0.025 0.975 23 H 0.058 0.942 24 H 0.026 0.974 25 H 0.261 0.739 26 H 0.009 0.991 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.350 0.650 36 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.299 -0.344 13.650 14.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.113 3.887 3 H -0.014 1.014 4 C -0.558 4.558 5 H 0.075 0.925 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.193 1.193 12 N -0.260 5.260 13 C -0.106 4.106 14 C -0.028 4.028 15 H 0.090 0.910 16 C -0.199 4.199 17 C -0.149 4.149 18 C -0.188 4.188 19 C -0.013 4.013 20 H 0.095 0.905 21 N -0.375 5.375 22 H 0.045 0.955 23 H 0.077 0.923 24 H 0.045 0.955 25 H 0.070 0.930 26 H 0.028 0.972 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.165 0.835 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.802 -1.151 12.846 13.198 hybrid contribution 0.826 1.273 -0.564 1.619 sum 3.627 0.123 12.282 12.807 Atomic orbital electron populations 1.21630 0.97855 0.98820 0.99336 1.18981 0.92174 0.90406 0.87145 1.01439 1.21477 1.30961 1.12181 0.91142 0.92453 1.25723 0.95465 0.95800 1.01922 1.70024 1.37935 1.24218 1.23941 0.85535 0.78845 0.78219 0.78892 1.20250 1.20909 1.19272 1.62215 1.09896 1.51908 1.01969 1.22183 0.88380 0.98875 1.01175 1.22438 0.99330 0.90829 0.90163 0.91019 1.23017 1.00442 0.98233 0.98233 1.22375 1.01632 0.97322 0.93523 1.23167 1.00294 0.95254 1.00125 1.21975 0.90485 0.96864 0.91928 0.90461 1.58748 1.21988 1.28785 1.27981 0.95533 0.92296 0.95548 0.93020 0.97236 0.90668 0.92953 0.92670 0.93615 0.90650 0.90838 0.89605 0.91258 0.83543 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.12 8.75 71.98 0.63 -5.49 16 2 C 0.22 11.57 1.84 44.17 0.08 11.65 16 3 H -0.03 -1.85 7.34 -2.38 -0.02 -1.87 16 4 C -0.52 -29.44 7.99 25.60 0.20 -29.24 16 5 H 0.06 3.24 6.42 -2.91 -0.02 3.22 16 6 C 0.01 0.52 5.30 84.66 0.45 0.97 16 7 N -0.92 -54.31 11.32 21.45 0.24 -54.07 16 8 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 9 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 12 N -0.54 -23.63 4.58 -871.95 -3.99 -27.63 16 13 C 0.04 1.67 8.28 127.69 1.06 2.73 16 14 C 0.08 2.96 2.47 45.64 0.11 3.07 16 15 H 0.07 2.84 5.83 -2.39 -0.01 2.82 16 16 C -0.16 -5.36 5.18 31.67 0.16 -5.20 16 17 C -0.11 -2.63 6.91 31.88 0.22 -2.41 16 18 C -0.15 -3.25 6.49 31.67 0.21 -3.04 16 19 C 0.10 2.79 3.04 45.64 0.14 2.93 16 20 H 0.08 2.39 6.48 -2.39 -0.02 2.37 16 21 N -0.84 -20.52 9.11 -165.67 -1.51 -22.03 16 22 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 23 H 0.06 3.33 6.07 -2.39 -0.01 3.31 16 24 H 0.03 1.21 6.29 -2.39 -0.02 1.20 16 25 H 0.26 14.60 8.31 -92.71 -0.77 13.82 16 26 H 0.01 0.38 6.31 -2.39 -0.02 0.37 16 27 H 0.07 2.46 6.06 -2.39 -0.01 2.45 16 28 H 0.05 2.23 6.52 -2.39 -0.02 2.22 16 29 H 0.05 2.04 5.70 -2.39 -0.01 2.03 16 30 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.09 1.45 8.03 -2.39 -0.02 1.43 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.35 6.56 9.06 -89.69 -0.81 5.75 16 36 H 0.34 7.49 8.97 -89.69 -0.80 6.68 16 Total: -1.00 -62.67 270.24 -0.51 -63.17 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -0.54 Total: 17.83 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 3.26 Total: -24.03 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -5.26 Total: -103.72 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -62.67 -0.51 -63.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251594835.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.526 kcal (2) G-P(sol) polarization free energy of solvation -62.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds