Wall clock time and date at job start Mon Mar 30 2020 03:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47067 * 2 1 4 4 C 1.50703 * 109.46866 * 240.00485 * 2 1 3 5 5 H 1.08001 * 119.99594 * 244.69886 * 4 2 1 6 6 C 1.37871 * 120.00086 * 64.69934 * 4 2 1 7 7 N 1.31520 * 120.00327 * 7.55661 * 6 4 2 8 8 Si 1.86803 * 119.99914 * 187.56233 * 6 4 2 9 9 H 1.48505 * 109.46926 * 59.99904 * 8 6 4 10 10 H 1.48500 * 109.47177 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47119 * 299.99805 * 8 6 4 12 12 N 1.46894 * 109.47334 * 120.00118 * 2 1 3 13 13 C 1.46900 * 111.00049 * 303.19796 * 12 2 1 14 14 C 1.46904 * 111.00011 * 179.24646 * 12 2 1 15 15 H 1.09005 * 110.01384 * 308.63006 * 14 12 2 16 16 C 1.53870 * 110.03232 * 70.01945 * 14 12 2 17 17 C 1.54262 * 106.59860 * 119.28600 * 16 14 12 18 18 C 1.54892 * 104.19627 * 23.61199 * 17 16 14 19 19 C 1.54259 * 110.03296 * 187.18915 * 14 12 2 20 20 H 1.09001 * 110.49054 * 335.78063 * 19 14 12 21 21 N 1.46903 * 110.48789 * 98.42857 * 19 14 12 22 22 H 1.09002 * 109.46746 * 186.12187 * 1 2 3 23 23 H 1.09003 * 109.46629 * 306.11696 * 1 2 3 24 24 H 1.08994 * 109.47532 * 66.11843 * 1 2 3 25 25 H 0.97002 * 119.99281 * 2.54979 * 7 6 4 26 26 H 1.09001 * 109.46923 * 60.00169 * 13 12 2 27 27 H 1.09005 * 109.46634 * 180.02562 * 13 12 2 28 28 H 1.08994 * 109.47031 * 299.99980 * 13 12 2 29 29 H 1.09003 * 110.03375 * 238.57100 * 16 14 12 30 30 H 1.08998 * 110.03143 * 359.95243 * 16 14 12 31 31 H 1.09008 * 110.48808 * 142.28838 * 17 16 14 32 32 H 1.08998 * 110.49147 * 264.79726 * 17 16 14 33 33 H 1.08999 * 110.75739 * 80.37052 * 18 17 16 34 34 H 1.09001 * 110.75537 * 203.55682 * 18 17 16 35 35 H 1.00906 * 111.00060 * 180.02562 * 21 19 14 36 36 H 1.00901 * 111.00008 * 303.94871 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5892 -1.6306 -1.1333 6 6 1.7810 -0.1854 -2.4804 7 7 1.2354 1.0057 -2.5959 8 14 2.2152 -1.1660 -4.0099 9 1 1.4688 -2.4499 -4.0032 10 1 1.8471 -0.3863 -5.2189 11 1 3.6744 -1.4418 -4.0234 12 7 2.0197 -0.6925 1.1994 13 6 1.4873 -0.0720 2.4198 14 6 3.4881 -0.7277 1.2243 15 1 3.8681 -1.1142 0.2786 16 6 4.0450 0.6840 1.4785 17 6 4.8517 0.6097 2.7913 18 6 5.2402 -0.8847 2.9143 19 6 3.9758 -1.6106 2.3914 20 1 3.2168 -1.6648 3.1718 21 7 4.3175 -2.9560 1.9104 22 1 -0.3633 -1.0218 0.1096 23 1 -0.3633 0.6058 0.8302 24 1 -0.3634 0.4160 -0.9396 25 1 1.0439 1.5303 -1.8028 26 1 0.3985 -0.1219 2.4075 27 1 1.8660 -0.6039 3.2927 28 1 1.8027 0.9703 2.4648 29 1 4.6960 0.9823 0.6567 30 1 3.2257 1.3954 1.5826 31 1 5.7444 1.2319 2.7263 32 1 4.2348 0.9164 3.6360 33 1 6.1030 -1.1123 2.2884 34 1 5.4384 -1.1480 3.9533 35 1 4.6373 -3.5405 2.6682 36 1 3.5355 -3.3789 1.4333 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251594839.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:50 Heat of formation + Delta-G solvation = -2.659930 kcal Electronic energy + Delta-G solvation = -15320.760472 eV Core-core repulsion = 13032.332203 eV Total energy + Delta-G solvation = -2288.428269 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.06021 -35.54801 -32.73640 -32.17526 -28.95940 -27.48946 -26.21941 -24.84677 -23.59284 -20.77240 -19.72658 -18.60910 -16.61770 -16.06790 -15.01503 -14.84436 -14.40077 -14.11575 -13.66665 -13.30842 -12.81278 -12.09101 -11.81672 -11.43210 -11.38820 -11.26024 -10.96997 -10.83516 -10.72600 -10.61490 -10.43539 -10.19366 -10.05260 -9.92169 -9.76345 -8.44684 -8.33558 -8.26176 -7.20061 -6.29567 -3.99457 3.48537 3.50116 3.68401 4.56025 4.77978 4.87087 4.98081 5.31169 5.38787 5.43366 5.71355 5.89169 5.92166 5.96817 6.03915 6.08452 6.11533 6.21522 6.33480 6.39104 6.53994 6.62510 6.69899 6.74681 6.82789 6.98910 7.19322 7.48966 7.60256 7.81982 7.95094 8.12006 8.42881 8.65913 8.92801 9.70293 11.06775 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031835 B = 0.010534 C = 0.009480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.335399 B = 2657.362965 C = 2952.821138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.200 3.800 3 H -0.008 1.008 4 C -0.581 4.581 5 H 0.057 0.943 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 1.066 2.934 9 H -0.288 1.288 10 H -0.285 1.285 11 H -0.288 1.288 12 N -0.526 5.526 13 C 0.016 3.984 14 C 0.095 3.905 15 H 0.107 0.893 16 C -0.151 4.151 17 C -0.120 4.120 18 C -0.117 4.117 19 C 0.089 3.911 20 H 0.042 0.958 21 N -0.841 5.841 22 H 0.044 0.956 23 H 0.015 0.985 24 H 0.061 0.939 25 H 0.269 0.731 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.017 0.983 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.329 0.671 36 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.509 -3.004 10.146 11.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.094 3.906 3 H 0.010 0.990 4 C -0.619 4.619 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.551 5.551 8 Si 0.894 3.106 9 H -0.215 1.215 10 H -0.210 1.210 11 H -0.215 1.215 12 N -0.249 5.249 13 C -0.133 4.133 14 C -0.014 4.014 15 H 0.125 0.875 16 C -0.190 4.190 17 C -0.158 4.158 18 C -0.155 4.155 19 C -0.023 4.023 20 H 0.059 0.941 21 N -0.370 5.370 22 H 0.063 0.937 23 H 0.034 0.966 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.140 0.860 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.791 -3.093 7.993 9.819 hybrid contribution -0.494 0.570 2.418 2.533 sum 4.297 -2.523 10.411 11.542 Atomic orbital electron populations 1.21930 0.98603 0.99631 0.99487 1.19338 0.91373 0.92239 0.87665 0.99027 1.21881 1.38234 1.10667 0.91147 0.92473 1.25725 0.94672 0.96864 1.01191 1.70806 1.40791 1.10097 1.33395 0.83591 0.76212 0.75157 0.75610 1.21461 1.21023 1.21481 1.62270 1.06654 1.53786 1.02157 1.22460 1.00146 0.96658 0.94022 1.22258 0.87882 0.92149 0.99104 0.87547 1.22712 0.99705 0.99753 0.96861 1.22280 0.99396 0.96212 0.97952 1.22514 0.98371 0.94856 0.99790 1.22321 0.94764 0.89270 0.95911 0.94054 1.58751 1.42372 1.04020 1.31868 0.93726 0.96630 0.92023 0.92034 0.92115 0.92993 0.96428 0.91871 0.91814 0.92210 0.92445 0.90691 0.92643 0.86000 0.83777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.34 37.16 0.31 -2.99 16 2 C 0.20 5.00 1.46 -68.86 -0.10 4.90 16 3 H -0.01 -0.21 6.37 -51.93 -0.33 -0.54 16 4 C -0.58 -16.02 7.63 -34.44 -0.26 -16.28 16 5 H 0.06 1.61 6.90 -52.49 -0.36 1.24 16 6 C 0.02 0.54 5.18 -17.82 -0.09 0.45 16 7 N -0.91 -27.23 12.86 55.43 0.71 -26.52 16 8 Si 1.07 25.35 29.91 -169.99 -5.08 20.26 16 9 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.53 -11.17 4.61 -226.96 -1.05 -12.22 16 13 C 0.02 0.29 8.43 60.06 0.51 0.80 16 14 C 0.10 1.88 2.45 -66.60 -0.16 1.72 16 15 H 0.11 2.48 6.22 -51.93 -0.32 2.15 16 16 C -0.15 -2.78 5.40 -25.62 -0.14 -2.92 16 17 C -0.12 -1.76 6.83 -25.07 -0.17 -1.94 16 18 C -0.12 -1.67 6.58 -24.74 -0.16 -1.83 16 19 C 0.09 1.44 3.48 -66.05 -0.23 1.21 16 20 H 0.04 0.67 5.89 -51.93 -0.31 0.37 16 21 N -0.84 -12.77 9.27 -3.26 -0.03 -12.80 16 22 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.01 0.32 6.72 -51.93 -0.35 -0.03 16 24 H 0.06 1.60 6.27 -51.93 -0.33 1.27 16 25 H 0.27 7.99 6.16 -40.82 -0.25 7.74 16 26 H 0.06 1.10 6.39 -51.93 -0.33 0.77 16 27 H 0.05 0.85 6.01 -51.93 -0.31 0.53 16 28 H 0.02 0.32 6.13 -51.93 -0.32 0.00 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 1.25 5.12 -51.93 -0.27 0.99 16 31 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.33 4.08 9.08 -39.29 -0.36 3.72 16 36 H 0.35 5.57 9.02 -39.29 -0.35 5.22 16 LS Contribution 268.88 15.07 4.05 4.05 Total: -1.00 -28.97 268.88 -7.42 -36.39 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.52 Total: 7.72 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -0.51 Total: -16.89 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.36 Total: -51.53 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.08 Total: 20.26 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.97 -7.42 -36.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251594839.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.734 kcal (2) G-P(sol) polarization free energy of solvation -28.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds